Literature DB >> 24194530

Mighty small: Observing and modeling individual microbes becomes big science.

Jan-Ulrich Kreft1, Caroline M Plugge, Volker Grimm, Clara Prats, Johan H J Leveau, Thomas Banitz, Stephen Baines, James Clark, Alexandra Ros, Isaac Klapper, Chris J Topping, Anthony J Field, Andrew Schuler, Elena Litchman, Ferdi L Hellweger.   

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Year:  2013        PMID： 24194530      PMCID： PMC3831448          DOI： 10.1073/pnas.1317472110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  5 in total

Review 1.  Detecting metabolic activities in single cells, with emphasis on nanoSIMS.

Authors:  Niculina Musat; Rachel Foster; Tomas Vagner; Birgit Adam; Marcel M M Kuypers
Journal:  FEMS Microbiol Rev       Date:  2011-09-26       Impact factor: 16.408

Review 2.  Pattern-oriented modeling of agent-based complex systems: lessons from ecology.

Authors:  Volker Grimm; Eloy Revilla; Uta Berger; Florian Jeltsch; Wolf M Mooij; Steven F Railsback; Hans-Hermann Thulke; Jacob Weiner; Thorsten Wiegand; Donald L DeAngelis
Journal:  Science       Date:  2005-11-11       Impact factor: 47.728

3.  iDynoMiCS: next-generation individual-based modelling of biofilms.

Authors:  Laurent A Lardon; Brian V Merkey; Sónia Martins; Andreas Dötsch; Cristian Picioreanu; Jan-Ulrich Kreft; Barth F Smets
Journal:  Environ Microbiol       Date:  2011-03-16       Impact factor: 5.491

4.  Computational modeling of synthetic microbial biofilms.

Authors:  Timothy J Rudge; Paul J Steiner; Andrew Phillips; Jim Haseloff
Journal:  ACS Synth Biol       Date:  2012-08-10       Impact factor: 5.110

Review 5.  Going local: technologies for exploring bacterial microenvironments.

Authors:  Aimee K Wessel; Laura Hmelo; Matthew R Parsek; Marvin Whiteley
Journal:  Nat Rev Microbiol       Date:  2013-05       Impact factor: 60.633
  5 in total
  21 in total

1.  The extent of functional redundancy changes as species' roles shift in different environments.

Authors:  Ingo Fetzer; Karin Johst; Robert Schäwe; Thomas Banitz; Hauke Harms; Antonis Chatzinotas
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-17       Impact factor: 11.205

2.  Neutral Evolution and Dispersal Limitation Produce Biogeographic Patterns in Microcystis aeruginosa Populations of Lake Systems.

Authors:  Sahar Shirani; Ferdi L Hellweger
Journal:  Microb Ecol       Date:  2017-03-16       Impact factor: 4.552

3.  INDISIM-Denitrification, an individual-based model for study the denitrification process.

Authors:  Pablo Araujo-Granda; Anna Gras; Marta Ginovart; Vincent Moulton
Journal:  J Ind Microbiol Biotechnol       Date:  2019-11-05       Impact factor: 3.346

Review 4.  Ecological modelling approaches for predicting emergent properties in microbial communities.

Authors:  Naomi Iris van den Berg; Daniel Machado; Sophia Santos; Isabel Rocha; Jeremy Chacón; William Harcombe; Sara Mitri; Kiran R Patil
Journal:  Nat Ecol Evol       Date:  2022-05-16       Impact factor: 19.100

Review 5.  Mapping the inner workings of the microbiome: genomic- and metagenomic-based study of metabolism and metabolic interactions in the human microbiome.

Authors:  Ohad Manor; Roie Levy; Elhanan Borenstein
Journal:  Cell Metab       Date:  2014-08-28       Impact factor: 27.287

Review 6.  Biophysical processes supporting the diversity of microbial life in soil.

Authors:  Robin Tecon; Dani Or
Journal:  FEMS Microbiol Rev       Date:  2017-09-01       Impact factor: 16.408

Review 7.  Advancing microbial sciences by individual-based modelling.

Authors:  Ferdi L Hellweger; Robert J Clegg; James R Clark; Caroline M Plugge; Jan-Ulrich Kreft
Journal:  Nat Rev Microbiol       Date:  2016-06-06       Impact factor: 60.633

Review 8.  Host-pathogen interactions between the human innate immune system and Candida albicans-understanding and modeling defense and evasion strategies.

Authors:  Sybille Dühring; Sebastian Germerodt; Christine Skerka; Peter F Zipfel; Thomas Dandekar; Stefan Schuster
Journal:  Front Microbiol       Date:  2015-06-30       Impact factor: 5.640

9.  BEMOVI, software for extracting behavior and morphology from videos, illustrated with analyses of microbes.

Authors:  Frank Pennekamp; Nicolas Schtickzelle; Owen L Petchey
Journal:  Ecol Evol       Date:  2015-06-04       Impact factor: 2.912

10.  Age-correlated stress resistance improves fitness of yeast: support from agent-based simulations.

Authors:  Ferdi L Hellweger; Neil D Fredrick; John A Berges
Journal:  BMC Syst Biol       Date:  2014-02-15
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