Literature DB >> 24189344

Common genetic variants on 1p13.2 associate with risk of autism.

K Xia1, H Guo2, Z Hu1, G Xun3, L Zuo4, Y Peng1, K Wang5, Y He3, Z Xiong1, L Sun5, Q Pan6, Z Long6, X Zou7, X Li3, W Li6, X Xu6, L Lu6, Y Liu3, Y Hu6, D Tian6, L Long6, J Ou3, Y Liu3, X Li3, L Zhang6, Y Pan6, J Chen6, H Peng6, Q Liu6, X Luo4, W Su6, L Wu6, D Liang6, H Dai6, X Yan8, Y Feng8, B Tang8, J Li1, Z Miedzybrodzka9, J Xia6, Z Zhang6, X Luo4, X Zhang5, D St Clair10, J Zhao11, F Zhang12.   

Abstract

Autism is a highly heritable neurodevelopmental disorder, and known genetic variants, mostly rare, account only for a small proportion of cases. Here we report a genome-wide association study on autism using two Chinese cohorts as gene discovery (n=2150) and three data sets of European ancestry populations for replication analysis of top association signals. Meta-analysis identified three single-nucleotide polymorphisms, rs936938 (P=4.49 × 10(-8)), non-synonymous rs6537835 (P=3.26 × 10(-8)) and rs1877455 (P=8.70 × 10(-8)), and related haplotypes, AMPD1-NRAS-CSDE1, TRIM33 and TRIM33-BCAS2, associated with autism; all were mapped to a previously reported linkage region (1p13.2) with autism. These genetic associations were further supported by a cis-acting regulatory effect on the gene expressions of CSDE1, NRAS and TRIM33 and by differential expression of CSDE1 and TRIM33 in the human prefrontal cortex of post-mortem brains between subjects with and those without autism. Our study suggests TRIM33 and NRAS-CSDE1 as candidate genes for autism, and may provide a novel insight into the etiology of autism.

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Year:  2013        PMID: 24189344     DOI: 10.1038/mp.2013.146

Source DB:  PubMed          Journal:  Mol Psychiatry        ISSN: 1359-4184            Impact factor:   15.992


  37 in total

1.  A high-density SNP genome-wide linkage scan in a large autism extended pedigree.

Authors:  K Allen-Brady; J Miller; N Matsunami; J Stevens; H Block; M Farley; L Krasny; C Pingree; J Lainhart; M Leppert; W M McMahon; H Coon
Journal:  Mol Psychiatry       Date:  2008-02-19       Impact factor: 15.992

2.  Human genetics: Fruits of exome sequencing for autism.

Authors:  Mary Muers
Journal:  Nat Rev Genet       Date:  2012-05-15       Impact factor: 53.242

3.  Analysis of autism susceptibility gene loci on chromosomes 1p, 4p, 6q, 7q, 13q, 15q, 16p, 17q, 19q and 22q in Finnish multiplex families.

Authors:  M Auranen; T Nieminen; S Majuri; R Vanhala; L Peltonen; I Järvelä
Journal:  Mol Psychiatry       Date:  2000-05       Impact factor: 15.992

4.  De novo mutations revealed by whole-exome sequencing are strongly associated with autism.

Authors:  Stephan J Sanders; Michael T Murtha; Abha R Gupta; John D Murdoch; Melanie J Raubeson; A Jeremy Willsey; A Gulhan Ercan-Sencicek; Nicholas M DiLullo; Neelroop N Parikshak; Jason L Stein; Michael F Walker; Gordon T Ober; Nicole A Teran; Youeun Song; Paul El-Fishawy; Ryan C Murtha; Murim Choi; John D Overton; Robert D Bjornson; Nicholas J Carriero; Kyle A Meyer; Kaya Bilguvar; Shrikant M Mane; Nenad Sestan; Richard P Lifton; Murat Günel; Kathryn Roeder; Daniel H Geschwind; Bernie Devlin; Matthew W State
Journal:  Nature       Date:  2012-04-04       Impact factor: 49.962

Review 5.  Autism as a paradigmatic complex genetic disorder.

Authors:  Jeremy Veenstra-Vanderweele; Susan L Christian; Edwin H Cook
Journal:  Annu Rev Genomics Hum Genet       Date:  2004       Impact factor: 8.929

6.  Autism genome-wide copy number variation reveals ubiquitin and neuronal genes.

Authors:  Joseph T Glessner; Kai Wang; Guiqing Cai; Olena Korvatska; Cecilia E Kim; Shawn Wood; Haitao Zhang; Annette Estes; Camille W Brune; Jonathan P Bradfield; Marcin Imielinski; Edward C Frackelton; Jennifer Reichert; Emily L Crawford; Jeffrey Munson; Patrick M A Sleiman; Rosetta Chiavacci; Kiran Annaiah; Kelly Thomas; Cuiping Hou; Wendy Glaberson; James Flory; Frederick Otieno; Maria Garris; Latha Soorya; Lambertus Klei; Joseph Piven; Kacie J Meyer; Evdokia Anagnostou; Takeshi Sakurai; Rachel M Game; Danielle S Rudd; Danielle Zurawiecki; Christopher J McDougle; Lea K Davis; Judith Miller; David J Posey; Shana Michaels; Alexander Kolevzon; Jeremy M Silverman; Raphael Bernier; Susan E Levy; Robert T Schultz; Geraldine Dawson; Thomas Owley; William M McMahon; Thomas H Wassink; John A Sweeney; John I Nurnberger; Hilary Coon; James S Sutcliffe; Nancy J Minshew; Struan F A Grant; Maja Bucan; Edwin H Cook; Joseph D Buxbaum; Bernie Devlin; Gerard D Schellenberg; Hakon Hakonarson
Journal:  Nature       Date:  2009-04-28       Impact factor: 49.962

7.  Strong association of de novo copy number mutations with autism.

Authors:  Jonathan Sebat; B Lakshmi; Dheeraj Malhotra; Jennifer Troge; Christa Lese-Martin; Tom Walsh; Boris Yamrom; Seungtai Yoon; Alex Krasnitz; Jude Kendall; Anthony Leotta; Deepa Pai; Ray Zhang; Yoon-Ha Lee; James Hicks; Sarah J Spence; Annette T Lee; Kaija Puura; Terho Lehtimäki; David Ledbetter; Peter K Gregersen; Joel Bregman; James S Sutcliffe; Vaidehi Jobanputra; Wendy Chung; Dorothy Warburton; Mary-Claire King; David Skuse; Daniel H Geschwind; T Conrad Gilliam; Kenny Ye; Michael Wigler
Journal:  Science       Date:  2007-03-15       Impact factor: 47.728

8.  Age-dependent brain gene expression and copy number anomalies in autism suggest distinct pathological processes at young versus mature ages.

Authors:  Maggie L Chow; Tiziano Pramparo; Mary E Winn; Cynthia Carter Barnes; Hai-Ri Li; Lauren Weiss; Jian-Bing Fan; Sarah Murray; Craig April; Haim Belinson; Xiang-Dong Fu; Anthony Wynshaw-Boris; Nicholas J Schork; Eric Courchesne
Journal:  PLoS Genet       Date:  2012-03-22       Impact factor: 5.917

9.  Mutation in the gene encoding ubiquitin ligase LRSAM1 in patients with Charcot-Marie-Tooth disease.

Authors:  Duane L Guernsey; Haiyan Jiang; Karen Bedard; Susan C Evans; Meghan Ferguson; Makoto Matsuoka; Christine Macgillivray; Mathew Nightingale; Scott Perry; Andrea L Rideout; Andrew Orr; Mark Ludman; David L Skidmore; Timothy Benstead; Mark E Samuels
Journal:  PLoS Genet       Date:  2010-08-26       Impact factor: 5.917

10.  Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations.

Authors:  Brian J O'Roak; Pelagia Deriziotis; Choli Lee; Laura Vives; Jerrod J Schwartz; Santhosh Girirajan; Emre Karakoc; Alexandra P Mackenzie; Sarah B Ng; Carl Baker; Mark J Rieder; Deborah A Nickerson; Raphael Bernier; Simon E Fisher; Jay Shendure; Evan E Eichler
Journal:  Nat Genet       Date:  2011-05-15       Impact factor: 38.330

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  32 in total

1.  AMPD1 functional variants associated with autism in Han Chinese population.

Authors:  Lusi Zhang; Jianjun Ou; Xiaojuan Xu; Yu Peng; Hui Guo; Yongcheng Pan; Jingjing Chen; Tianyun Wang; Hao Peng; Qiong Liu; Di Tian; Qian Pan; Xiaobin Zou; Jingping Zhao; Zhengmao Hu; Kun Xia
Journal:  Eur Arch Psychiatry Clin Neurosci       Date:  2014-08-26       Impact factor: 5.270

2.  Potential serum biomarkers from a metabolomics study of autism.

Authors:  Han Wang; Shuang Liang; Maoqing Wang; Jingquan Gao; Caihong Sun; Jia Wang; Wei Xia; Shiying Wu; Susan J Sumner; Fengyu Zhang; Changhao Sun; Lijie Wu
Journal:  J Psychiatry Neurosci       Date:  2016-01       Impact factor: 6.186

3.  Excessive UBE3A dosage impairs retinoic acid signaling and synaptic plasticity in autism spectrum disorders.

Authors:  Xingxing Xu; Chuanyin Li; Xiaobo Gao; Kun Xia; Hui Guo; Yali Li; Zijian Hao; Lei Zhang; Daming Gao; Chenfan Xu; Huatai Xu; Zhi-Qi Xiong; Zilong Qiu; Ling Mei; Xiaoduo Xie; Kangcheng Ruan; Ronggui Hu
Journal:  Cell Res       Date:  2017-10-27       Impact factor: 25.617

4.  Group sparse reduced rank regression for neuroimaging genetic study.

Authors:  Xiaofeng Zhu; Heung-Il Suk; Dinggang Shen
Journal:  World Wide Web       Date:  2018-09-17       Impact factor: 2.716

5.  Targeted sequencing and functional analysis reveal brain-size-related genes and their networks in autism spectrum disorders.

Authors:  Jinchen Li; Lin Wang; Hui Guo; Leisheng Shi; Kun Zhang; Meina Tang; Shanshan Hu; Shanshan Dong; Yanling Liu; Tianyun Wang; Ping Yu; Xin He; Zhengmao Hu; Jinping Zhao; Chunyu Liu; Zhong Sheng Sun; Kun Xia
Journal:  Mol Psychiatry       Date:  2017-07-25       Impact factor: 15.992

6.  Variants in TTC25 affect autistic trait in patients with autism spectrum disorder and general population.

Authors:  Dina Vojinovic; Nathalie Brison; Shahzad Ahmad; Ilse Noens; Irene Pappa; Lennart C Karssen; Henning Tiemeier; Cornelia M van Duijn; Hilde Peeters; Najaf Amin
Journal:  Eur J Hum Genet       Date:  2017-05-17       Impact factor: 4.246

7.  Low-Rank Graph-Regularized Structured Sparse Regression for Identifying Genetic Biomarkers.

Authors:  Xiaofeng Zhu; Heung-Il Suk; Heng Huang; Dinggang Shen
Journal:  IEEE Trans Big Data       Date:  2017-08-04

8.  Novel functional variants at the GWAS-implicated loci might confer risk to major depressive disorder, bipolar affective disorder and schizophrenia.

Authors:  Leonid O Bryzgalov; Elena E Korbolina; Ilja I Brusentsov; Elena Y Leberfarb; Natalia P Bondar; Tatiana I Merkulova
Journal:  BMC Neurosci       Date:  2018-04-19       Impact factor: 3.288

9.  Genetic risk factors for autism-spectrum disorders: a systematic review based on systematic reviews and meta-analysis.

Authors:  Hongyuan Wei; Yunjiao Zhu; Tianli Wang; Xueqing Zhang; Kexin Zhang; Zhihua Zhang
Journal:  J Neural Transm (Vienna)       Date:  2021-06-11       Impact factor: 3.575

10.  Wnt/β-catenin pathway and cell adhesion deregulation in CSDE1-related intellectual disability and autism spectrum disorders.

Authors:  E El Khouri; J Ghoumid; D Haye; F Giuliano; L Drevillon; A Briand-Suleau; P De La Grange; V Nau; T Gaillon; T Bienvenu; H Jacquemin-Sablon; M Goossens; S Amselem; I Giurgea
Journal:  Mol Psychiatry       Date:  2021-04-19       Impact factor: 15.992

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