Literature DB >> 24187021

Molecular and phenotypic analyses reveal the non-identity of the Phaeobacter gallaeciensis type strain deposits CIP 105210T and DSM 17395.

Nora Buddruhs1, Silke Pradella1, Markus Göker1, Orsola Päuker1, Rüdiger Pukall1, Cathrin Spröer1, Peter Schumann1, Jörn Petersen1, Thorsten Brinkhoff2.   

Abstract

The marine genus Phaeobacter currently comprises six species, some of which were intensively studied mainly due to their ability to produce secondary metabolites. The type strain of the type species, Phaeobacter gallaeciensis BS107(T), has been deposited at several public culture collections worldwide. Based on differences in plasmid profiles, we detected that the alleged P. gallaeciensis type strains deposited at the Collection Institute Pasteur (CIP; Paris, France) as CIP 105210 and at the German Collection of Microorganisms and Cell Cultures (DSMZ; Braunschweig, Germany) as DSM 17395 are not identical. To determine the identity of these strains, we conducted DNA-DNA hybridization, matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF), 16S rRNA gene and internal transcribed spacer (ITS) sequence analyses, as well as physiological experiments. Based on the detailed 16S rRNA gene reanalysis we showed that strain CIP 105210 most likely corresponds to the original P. gallaeciensis type strain BS107(T). In contrast, the Phaeobacter strain DSM 17395 exhibits a much closer affiliation to Phaeobacter inhibens DSM 16374(T) ( = T5(T)) and should thus be allocated to this species. The detection of the dissimilarity of strains CIP 105210(T) and DSM 17395 will influence future comparative studies within the genus Phaeobacter.

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Year:  2013        PMID: 24187021     DOI: 10.1099/ijs.0.053900-0

Source DB:  PubMed          Journal:  Int J Syst Evol Microbiol        ISSN: 1466-5026            Impact factor:   2.747


  25 in total

1.  Carbohydrate catabolism in Phaeobacter inhibens DSM 17395, a member of the marine roseobacter clade.

Authors:  Katharina Wiegmann; Michael Hensler; Lars Wöhlbrand; Marcus Ulbrich; Dietmar Schomburg; Ralf Rabus
Journal:  Appl Environ Microbiol       Date:  2014-08       Impact factor: 4.792

2.  Influence of Iron on Production of the Antibacterial Compound Tropodithietic Acid and Its Noninhibitory Analog in Phaeobacter inhibens.

Authors:  Paul W D'Alvise; Christopher B W Phippen; Kristian F Nielsen; Lone Gram
Journal:  Appl Environ Microbiol       Date:  2015-10-30       Impact factor: 4.792

3.  Changes in the Microbiome of Mariculture Feed Organisms after Treatment with a Potentially Probiotic Strain of Phaeobacter inhibens.

Authors:  Karen K Dittmann; Bastian Barker Rasmussen; Jette Melchiorsen; Eva C Sonnenschein; Lone Gram; Mikkel Bentzon-Tilia
Journal:  Appl Environ Microbiol       Date:  2020-07-02       Impact factor: 4.792

4.  Amino Acid and Sugar Catabolism in the Marine Bacterium Phaeobacter inhibens DSM 17395 from an Energetic Viewpoint.

Authors:  Daniel Wünsch; Kathleen Trautwein; Sabine Scheve; Christina Hinrichs; Christoph Feenders; Bernd Blasius; Dietmar Schomburg; Ralf Rabus
Journal:  Appl Environ Microbiol       Date:  2019-11-27       Impact factor: 4.792

5.  The marine bacterium Phaeobacter inhibens secures external ammonium by rapid buildup of intracellular nitrogen stocks.

Authors:  Kathleen Trautwein; Michael Hensler; Katharina Wiegmann; Ekaterina Skorubskaya; Lars Wöhlbrand; Daniel Wünsch; Christina Hinrichs; Christoph Feenders; Constanze Müller; Kristina Schell; Hanna Ruppersberg; Jannes Vagts; Sebastian Koßmehl; Alexander Steinbüchel; Philippe Schmidt-Kopplin; Heinz Wilkes; Helmut Hillebrand; Bernd Blasius; Dietmar Schomburg; Ralf Rabus
Journal:  FEMS Microbiol Ecol       Date:  2018-10-01       Impact factor: 4.194

6.  Toxicity of bioactive and probiotic marine bacteria and their secondary metabolites in Artemia sp. and Caenorhabditis elegans as eukaryotic model organisms.

Authors:  Anna Katrin Neu; Maria Månsson; Lone Gram; María J Prol-García
Journal:  Appl Environ Microbiol       Date:  2013-10-18       Impact factor: 4.792

7.  Gene regulatory and metabolic adaptation processes of Dinoroseobacter shibae DFL12T during oxygen depletion.

Authors:  Sebastian Laass; Sarah Kleist; Nelli Bill; Katharina Drüppel; Sebastian Kossmehl; Lars Wöhlbrand; Ralf Rabus; Johannes Klein; Manfred Rohde; Annekathrin Bartsch; Christoph Wittmann; Kerstin Schmidt-Hohagen; Petra Tielen; Dieter Jahn; Dietmar Schomburg
Journal:  J Biol Chem       Date:  2014-03-19       Impact factor: 5.157

Review 8.  Acyl-homoserine lactone quorum sensing in the Roseobacter clade.

Authors:  Jindong Zan; Yue Liu; Clay Fuqua; Russell T Hill
Journal:  Int J Mol Sci       Date:  2014-01-07       Impact factor: 5.923

9.  Genome sequence of the pink-pigmented marine bacterium Loktanella hongkongensis type strain (UST950701-009P(T)), a representative of the Roseobacter group.

Authors:  Stanley Ck Lau; Thomas Riedel; Anne Fiebig; James Han; Marcel Huntemann; Jörn Petersen; Natalia N Ivanova; Victor Markowitz; Tanja Woyke; Markus Göker; Nikos C Kyrpides; Hans-Peter Klenk; Pei-Yuan Qian
Journal:  Stand Genomic Sci       Date:  2015-08-11

10.  Assessing the exoproteome of marine bacteria, lesson from a RTX-toxin abundantly secreted by Phaeobacter strain DSM 17395.

Authors:  Emie Durighello; Joseph Alexander Christie-Oleza; Jean Armengaud
Journal:  PLoS One       Date:  2014-02-24       Impact factor: 3.240

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