Literature DB >> 24185970

Libraries of atomic multipole moments for precise modeling of electrostatic properties of amino acids.

W Sokalski1.   

Abstract

Contemporary theoretical models used in describing electrostatic properties of amino acids in polypeptides rely usually on atomic point charges. Recently noted defects of such models in reproducing protein folding originate from the inadequate representation of the electrostatic term, in particular inability of atomic charges to account for local anisotropy of molecular charge distribution. Such defects could be corrected by multicenter multipole moments derived directly from any high quality quantum chemical wavefunctions. This is illustrated by comparison of monopole and multipole electrostatic interactions between some amino acids within glutathione S-transferase.High quality Point Charge Models (PCM) can be derived analytically from multipole moment databases. Preliminary results suggest that torsional potentials are controlled by electrostatic interactions of atomic multipoles.Examples illustrating various uses of multicenter multipole moment databases of protein building blocks in modeling various properties of amino acids and polypeptides have been described, including calculation of molecular electrostatic potentials, electric fields, interactions between amino acid residues, estimates of pKa shifts and changes in catalytic activity induced by amino acid substitutions in mutated enzymes.

Entities:  

Year:  1994        PMID: 24185970     DOI: 10.1007/BF00808443

Source DB:  PubMed          Journal:  Amino Acids        ISSN: 0939-4451            Impact factor:   3.520


  11 in total

1.  Cumulative atomic multipole moments complement any atomic charge model to obtain more accurate electrostatic properties.

Authors:  W A Sokalski; M Shibata; R L Ornstein; R Rein
Journal:  J Comput Chem       Date:  1992-09       Impact factor: 3.376

2.  Multipole correction of atomic monopole models of molecular charge distribution. I. Peptides.

Authors:  W A Sokalski; D A Keller; R L Ornstein; R Rein
Journal:  J Comput Chem       Date:  1993       Impact factor: 3.376

3.  On the representation of electrostatic fields around ab initio charge distributions.

Authors:  S L Price; N G Richards
Journal:  J Comput Aided Mol Des       Date:  1991-02       Impact factor: 3.686

4.  A comparison of the CHARMM, AMBER and ECEPP potentials for peptides. II. Phi-psi maps for N-acetyl alanine N'-methyl amide: comparisons, contrasts and simple experimental tests.

Authors:  I K Roterman; M H Lambert; K D Gibson; H A Scheraga
Journal:  J Biomol Struct Dyn       Date:  1989-12

5.  A comparison of the CHARMM, AMBER and ECEPP potentials for peptides. I. Conformational predictions for the tandemly repeated peptide (Asn-Ala-Asn-Pro)9.

Authors:  I K Roterman; K D Gibson; H A Scheraga
Journal:  J Biomol Struct Dyn       Date:  1989-12

6.  Efficient method for the generation and display of electrostatic potential surfaces from ab-initio wavefunctions.

Authors:  W A Sokalski; S F Sneddon
Journal:  J Mol Graph       Date:  1991-06

7.  Analytical potentials from "ab initio" computations for the interaction between biomolecules. 1. Water with amino acids.

Authors:  E Clementi; F Cavallone; R Scordamaglia
Journal:  J Am Chem Soc       Date:  1977-08-17       Impact factor: 15.419

8.  Prediction of electrostatic effects of engineering of protein charges.

Authors:  M J Sternberg; F R Hayes; A J Russell; P G Thomas; A R Fersht
Journal:  Nature       Date:  1987 Nov 5-11       Impact factor: 49.962

9.  Energetics of charge-charge interactions in proteins.

Authors:  M K Gilson; B H Honig
Journal:  Proteins       Date:  1988

10.  Catalytic activity of aminoacyl tRNA synthetases and its implications for the origin of life. I. Aminoacyl adenylate formation in tyrosyl tRNA synthetase.

Authors:  W A Sokalski; M Shibata; D Barak; R Rein
Journal:  J Mol Evol       Date:  1991-11       Impact factor: 2.395

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