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Literature DB >> 2418413

Nucleic acid secondary structure prediction and display.

Abstract

A set of programs has been developed for the prediction and display of nucleic acid secondary structures. Information from experimental data can be used to restrict or enforce secondary structural elements. The predictions can be displayed either on normal line printers or on graphic devices like plotters or graphic terminals.

Mesh：

Substances：

Year: 1986 PMID： 2418413 PMCID： PMC339415 DOI： 10.1093/nar/14.1.317

Source DB: PubMed Journal: Nucleic Acids Res ISSN： 0305-1048 Impact factor: 16.971

11 in total

1. Sequence analysis of cloned cDNA encoding part of an immunoglobulin heavy chain.

Authors: J Rogers; P Clarke; W Salser
Journal: Nucleic Acids Res Date: 1979-07-25 Impact factor: 16.971

2. Computer method for predicting the secondary structure of single-stranded RNA.

Authors: G M Studnicka; G M Rahn; I W Cummings; W A Salser
Journal: Nucleic Acids Res Date: 1978-09 Impact factor: 16.971

3. Visualization of nucleic acid sequence structural information.

Authors: K Stüber
Journal: Comput Appl Biosci Date: 1985

4. Globin mRNA sequences: analysis of base pairing and evolutionary implications.

Authors: W Salser
Journal: Cold Spring Harb Symp Quant Biol Date: 1978

5. Improved estimation of secondary structure in ribonucleic acids.

Authors: I Tinoco; P N Borer; B Dengler; M D Levin; O C Uhlenbeck; D M Crothers; J Bralla
Journal: Nat New Biol Date: 1973-11-14

6. Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information.

Authors: M Zuker; P Stiegler
Journal: Nucleic Acids Res Date: 1981-01-10 Impact factor: 16.971

Review 7. Structure of ribosomal RNA.

Authors: H F Noller
Journal: Annu Rev Biochem Date: 1984 Impact factor: 23.643

8. Computation of statistical secondary structure of nucleic acids.

Authors: K Yamamoto; Y Kitamura; H Yoshikura
Journal: Nucleic Acids Res Date: 1984-01-11 Impact factor: 16.971

9. A comprehensive set of sequence analysis programs for the VAX.

Authors: J Devereux; P Haeberli; O Smithies
Journal: Nucleic Acids Res Date: 1984-01-11 Impact factor: 16.971

10. Secondary structure of the Tetrahymena ribosomal RNA intervening sequence: structural homology with fungal mitochondrial intervening sequences.

Authors: T R Cech; N K Tanner; I Tinoco; B R Weir; M Zuker; P S Perlman
Journal: Proc Natl Acad Sci U S A Date: 1983-07 Impact factor: 11.205

6 in total

1. Transcription in the region of the replication origin, oriC, of Escherichia coli: termination of asnC transcripts.

Authors: A Gielow; C Kücherer; R Kölling; W Messer
Journal: Mol Gen Genet Date: 1988-11

2. SEQIN-ST and CODFREG: a full screen sequence editor and a codon usage analysis program for the Atari ST.

Authors: K Stüber; K Spanier
Journal: Nucleic Acids Res Date: 1988-03-11 Impact factor: 16.971

3. Molecular analysis of paramutant plants of Antirrhinum majus and the involvement of transposable elements.

Authors: E Krebbers; R Hehl; R Piotrowiak; W E Lönnig; H Sommer; H Saedler
Journal: Mol Gen Genet Date: 1987-10

4. rbcS genes in Solanum tuberosum: conservation of transit peptide and exon shuffling during evolution.

Authors: F P Wolter; C C Fritz; L Willmitzer; J Schell; P H Schreier
Journal: Proc Natl Acad Sci U S A Date: 1988-02 Impact factor: 11.205

5. Molecular cloning and structural analysis of a gene from Zea mays (L.) coding for a putative receptor for the plant hormone auxin.

Authors: T Hesse; J Feldwisch; D Balshüsemann; G Bauw; M Puype; J Vandekerckhove; M Löbler; D Klämbt; J Schell; K Palme
Journal: EMBO J Date: 1989-09 Impact factor: 11.598

6. ELISA: structure-function inferences based on statistically significant and evolutionarily inspired observations.

Authors: Boris E Shakhnovich; John M Harvey; Steve Comeau; David Lorenz; Charles DeLisi; Eugene Shakhnovich
Journal: BMC Bioinformatics Date: 2003-09-02 Impact factor: 3.169

6 in total