Literature DB >> 24177573

Probing water micro-solvation in proteins by water catalysed proton-transfer tautomerism.

Jiun-Yi Shen1, Wei-Chih Chao, Chun Liu, Hsiao-An Pan, Hsiao-Ching Yang, Chi-Lin Chen, Yi-Kang Lan, Li-Ju Lin, Jinn-Shyan Wang, Jyh-Feng Lu, Steven Chun-Wei Chou, Kuo-Chun Tang, Pi-Tai Chou.   

Abstract

Scientists have made tremendous efforts to gain understanding of the water molecules in proteins via indirect measurements such as molecular dynamic simulation and/or probing the polarity of the local environment. Here we present a tryptophan analogue that exhibits remarkable water catalysed proton-transfer properties. The resulting multiple emissions provide unique fingerprints that can be exploited for direct sensing of a site-specific water environment in a protein without disrupting its native structure. Replacing tryptophan with the newly developed tryptophan analogue we sense different water environments surrounding the five tryptophans in human thromboxane A₂ synthase. This development may lead to future research to probe how water molecules affect the folding, structures and activities of proteins.

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Year:  2013        PMID: 24177573     DOI: 10.1038/ncomms3611

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  11 in total

1.  N-Terminally extended analogues of the K⁺ channel toxin from Stichodactyla helianthus as potent and selective blockers of the voltage-gated potassium channel Kv1.3.

Authors:  Shih C Chang; Redwan Huq; Sandeep Chhabra; Christine Beeton; Michael W Pennington; Brian J Smith; Raymond S Norton
Journal:  FEBS J       Date:  2015-04-23       Impact factor: 5.542

2.  Directed evolution of the PobR allosteric transcription factor to generate a biosensor for 4-hydroxymandelic acid.

Authors:  YaoYao Liang; Juan Luo; Chenhao Yang; Shuning Guo; Bowen Zhang; Fengqianrui Chen; Kairui Su; Yulong Zhang; Yi Dong; Zhihao Wang; Hongda Fu; Guangchao Sui; Pengchao Wang
Journal:  World J Microbiol Biotechnol       Date:  2022-05-03       Impact factor: 3.312

3.  The In Situ Tryptophan Analogue Probes the Conformational Dynamics in Asparaginase Isozymes.

Authors:  Wei-Chih Chao; Jiun-Yi Shen; Cheng-Han Yang; Yi-Kang Lan; Jui-Hung Yuan; Li-Ju Lin; Hsiao-Ching Yang; Jyh-Feng Lu; Jinn-Shyan Wang; Kevin Wee; You-Hua Chen; Pi-Tai Chou
Journal:  Biophys J       Date:  2016-04-26       Impact factor: 4.033

4.  Tuning the electronic transition energy of indole via substitution: application to identify tryptophan-based chromophores that absorb and emit visible light.

Authors:  Robert J Micikas; Ismail A Ahmed; Arusha Acharyya; Amos B Smith; Feng Gai
Journal:  Phys Chem Chem Phys       Date:  2021-03-12       Impact factor: 3.676

5.  Effective Energy Transfer via Plasmon-Activated High-Energy Water Promotes Its Fundamental Activities of Solubility, Ionic Conductivity, and Extraction at Room Temperature.

Authors:  Chih-Ping Yang; Hsiao-Chien Chen; Ching-Chiung Wang; Po-Wei Tsai; Chia-Wen Ho; Yu-Chuan Liu
Journal:  Sci Rep       Date:  2015-12-10       Impact factor: 4.379

6.  Triggering comprehensive enhancement in oxygen evolution reaction by using newly created solvent.

Authors:  Hsiao-Chien Chen; Fu-Der Mai; Kuang-Hsuan Yang; Liang-Yih Chen; Chih-Ping Yang; Yu-Chuan Liu
Journal:  Sci Rep       Date:  2016-06-22       Impact factor: 4.379

7.  Creation of Electron-doping Liquid Water with Reduced Hydrogen Bonds.

Authors:  Hsiao-Chien Chen; Fu-Der Mai; Bing-Joe Hwang; Ming-Jer Lee; Ching-Hsiang Chen; Shwu-Huey Wang; Hui-Yen Tsai; Chih-Ping Yang; Yu-Chuan Liu
Journal:  Sci Rep       Date:  2016-02-26       Impact factor: 4.379

8.  Probing the polarity and water environment at the protein-peptide binding interface using tryptophan analogues.

Authors:  Yi-Ting Chen; Wei-Chih Chao; Hsiou-Ting Kuo; Jiun-Yi Shen; I-Han Chen; Hsiao-Ching Yang; Jinn-Shyan Wang; Jyh-Feng Lu; Richard P Cheng; Pi-Tai Chou
Journal:  Biochem Biophys Rep       Date:  2016-06-02

9.  Temperature effect on water dynamics in tetramer phosphofructokinase matrix and the super-arrhenius respiration rate.

Authors:  Hsiao-Ching Yang; Yung-Chi Ge; Kuan-Hsuan Su; Chia-Cheng Chang; King-Chuen Lin; Vincenzo Aquilanti; Toshio Kasai
Journal:  Sci Rep       Date:  2021-01-11       Impact factor: 4.379

10.  Absorption, fluorescence, Raman spectroscopic and density functional theoretical studies on the singlet and triplet excited state decay of 3-amino-5-mercapto-1,2,4-triazole.

Authors:  Aimin Duan; Suosuo An; Jiadan Xue; Xuming Zheng; Yanying Zhao
Journal:  RSC Adv       Date:  2020-04-05       Impact factor: 4.036

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