Literature DB >> 24173492

Dipeptide frequencies in proteins and the CpG deficiency in vertebrate DNA.

E Bullock1, R A Elton.   

Abstract

Analysis of vertebrate protein sequences totalling 4040 residues shows that amino acids with a high proportion of codons ending in C occur with significantly reduced frequency before amino acids whose codons start with G. This effect is not shown by "control" bacterial protein sequences. The consequent implication of shortage of XXC. GXX codon pairs in vertebrate messenger RNA is discussed in relation to the extreme rarity of the base doublet CpG in vertebrate DNA.

Entities:  

Year:  1972        PMID： 24173492     DOI： 10.1007/BF01653960

Source DB:  PubMed          Journal:  J Mol Evol        ISSN： 0022-2844            Impact factor:   2.395


  23 in total

1.  Enzymatic synthesis of deoxyribonucleic acid. VIII. Frequencies of nearest neighbor base sequences in deoxyribonucleic acid.

Authors:  J JOSSE; A D KAISER; A KORNBERG
Journal:  J Biol Chem       Date:  1961-03       Impact factor: 5.157

2.  The amino acid sequence of the major parvalbumin from hake muscle.

Authors:  J F Pechere; J P Capony; L Ryden; J Demaille
Journal:  Biochem Biophys Res Commun       Date:  1971-06-04       Impact factor: 3.575

3.  Structure of a mammalian serine tRNA.

Authors:  M Staehelin; H Rogg; B C Baguley; T Ginsberg; W Wehrli
Journal:  Nature       Date:  1968-09-28       Impact factor: 49.962

4.  Egg white avidin. 3. Sequence of the 78-residue middle cyanogen bromide peptide. Complete amino acid sequence of the protein subunit.

Authors:  R J DeLange; T S Huang
Journal:  J Biol Chem       Date:  1971-02-10       Impact factor: 5.157

Review 5.  Recent problems in the genetic code.

Authors:  T H Jukes
Journal:  Curr Top Microbiol Immunol       Date:  1969       Impact factor: 4.291

6.  The characterization of amino acid sequences in proteins by statistical methods.

Authors:  J M Zimmerman; N Eliezer; R Simha
Journal:  J Theor Biol       Date:  1968-11       Impact factor: 2.691

7.  Studies on phospholipase A and its zymogen from porcine pancreas. I. The complete amino acid sequence.

Authors:  G H de Haas; A J Slotboom; P P Bonsen; L L van Deenen
Journal:  Biochim Biophys Acta       Date:  1970-10-20

8.  An approach to evolutionary relationships of mammalian DNA viruses through analysis of the pattern of nearest neighbor base sequences.

Authors:  H Subak-Sharpe; R R Bürk; L V Crawford; J M Morrison; J Hay; H M Keir
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1966

9.  Studies on the high-sulphur proteins of reduced merino wool. Amino acid sequence of protein SCMKB-3B 3 .

Authors:  T Haylett; L S Swart; D Parris
Journal:  Biochem J       Date:  1971-06       Impact factor: 3.857

10.  Nucleotide sequence of KB cell 5S RNA.

Authors:  B G Forget; S M Weissman
Journal:  Science       Date:  1967-12-29       Impact factor: 47.728
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  3 in total

1.  Choice of base at silent codon site 3 is not selectively neutral in eucaryotic structural genes: it maintains excess short runs of weak and strong hydrogen bonding bases.

Authors:  B E Blaisdell
Journal:  J Mol Evol       Date:  1983       Impact factor: 2.395

2.  CpG frequency in large DNA segments.

Authors:  G G Lennon; N W Fraser
Journal:  J Mol Evol       Date:  1983       Impact factor: 2.395

3.  The distribution of the dinucleotide CpG and cytosine methylation in the vitellogenin gene family.

Authors:  D N Cooper; S Gerber-Huber; D Nardelli; J L Schubiger; W Wahli
Journal:  J Mol Evol       Date:  1987       Impact factor: 2.395
  3 in total

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