| Literature DB >> 24172200 |
Olof Hellgren1, Megan Kutzer, Staffan Bensch, Gediminas Valkiūnas, Vaidas Palinauskas.
Abstract
BACKGROUND: The merozoite surface protein 1 (msp1) is one of the most studied vaccine candidate genes in mammalian Plasmodium spp. to have been used for investigations of epidemiology, population structures, and immunity to infections. However methodological difficulties have impeded the use of nuclear markers such as msp1 in Plasmodium parasites causing avian malaria. Data from an infection transcriptome of the host generalist avian malaria parasite Plasmodium relictum was used to identify and characterize the msp1 gene from two different isolates (mtDNA lineages SGS1 and GRW4). The aim was to investigate whether the msp1 gene in avian malaria species shares the properties of the msp1 gene in Plasmodium falciparum in terms of block variability, conserved anchor points and repeat motifs, and further to investigate the degree to which the gene might be informative in avian malaria parasites for population and epidemiological studies.Entities:
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Year: 2013 PMID: 24172200 PMCID: PMC3827925 DOI: 10.1186/1475-2875-12-381
Source DB: PubMed Journal: Malar J ISSN: 1475-2875 Impact factor: 2.979
Figure 1Primer sites (Forward: dark green arrow, Reverse: light green arrows) along the gene. Amplified fragments with corresponding primer pairs (Additional file 1) are represented by dashed lines.
Amino acid similarity (%) between different species/lineages
| All | | 49.8 | 32.9 | 33.7 | 89.9 | whole | whole |
| 1 | c | 44.4 | 34.1** | 46.4 | ND | 1–55 | 1–56 |
| 2 | r | - | - | - | - | 56–111 | - |
| 3 | c | 62.9 | 41.3 | 42.7 | 84.7* | 112–313 | 57–255 |
| 4 | v | 39.1 | 28.1 | 21.9 | 86.4 | 314–345 | 256–277 |
| 5 | c | 62.9 | 60 | 74.3 | 97.1 | 346–380 | 278–312 |
| 6 | v | 44.9 | 25.8 | 25.4 | 93.7 | 381–609 | 313–536 |
| 7 | sc | 55.4 | 48.6 | 50 | 93.2 | 610–682 | 537–610 |
| 8 | V1 | 36.1 | 14.4 | 16.3 | 84.7 | 683–779 | 611–717 |
| 9 | sc | 62.6 | 49.5 | 52.3 | 96.3 | 780–886 | 718–824 |
| 10 | v | 32.6 | 17.4 | 19.7 | 88.3 | 887–1024 | 825–953 |
| 11 | sc | 54.3 | 48.6 | 42.9 | 91.4 | 1,025–1,059 | 954–988 |
| 12 | c | 57.5 | 51.2 | 50.6 | 97.5 | 1,060–1,138 | 989–1,067 |
| 13 | sc | 52.2 | 45.2 | 39.3 | 96.4 | 1,139–1,222 | 1,068–1,149 |
| 14 | v | 20.8 | 14.9 | 12.7 | 76.1 | 1,223–1,288 | 1,150–1,220 |
| 15 | c | 44.6 | 42.2 | 37.1 | 89 | 1,289–1,316 | 1,221–1,308 |
| 16 | v | 54.8 | 27.9 | 29.1 | 98* | 1,317–1,602 | 1,309–1,528 |
| 17 | c | 66 | 51.5 | 50.5 | ND | 1,603–1,702 | 1,529–1,622 |
Plasmodiun gallinaceum (Pg), Plasmodium relictum lineage SGS1 (SGS1), Plasmodium relictum lineage GRW4 (GRW4), Plasmodium falciparum (Pf) Plasmodium yoelii (Py).
Row X shows whether a block had been described previously as conserved (c), including repetitive motifs (r), variable (v) or semi-conserved (sc). The positions of the blocks are described in the last two columns after aligning P. falciparum (X05624.2) and P. gallinaceum (AJ809338.1).
**only partial sequence of SGS1, *only partial sequence of GRW4, ND: No sequence of the block in GRW4, - block is lacking for SGS1, GRW4 and Pg. Blocks were assigned according to Tanabe et al. [16]. 1According to Rich and Ayala this block is also containing repetitive sections [22].
Figure 2Aligned amino acid sequences of (Pg), lineage SGS1 (Pr) and (Pf). Bars on top represent amino acid similarities: green: 100% identity, brown >30 < 100%, red <30% similarity. Blocks 1–17 are assigned according to Tanabe et al. [16] [compare Table 1 legend], blue: conserved, white: repetitive region; red, variable and green: semi-conserved region. Amino acid similarity (%) for the different block; solid line with filled circles: P. relictum (SGS1 vs GRW4), solid line with open circles: P. gallinaceum (Pg) vs P. relictum (SGS1) and dashed line with X: P. falciparum MAD20 isolate (X05624.2) vs K1 isolate (X03371.1).
Figure 3Amino acid alignment of the -p19 fragment between (SGS1) and (MAD20 isolate X05624.2). Dashed lines with black boxes represent conserved cysteine motifs with corresponding disulphide bonds forming, for the region, the two characteristic epithelia growth factor-like epitopes. Arrow indicates the anchor point in the merozoite membrane with the conserved “FCSS” motif surrounding the anchor point (red box).
Figure 4Comparison of nuclear sequence divergence (%) for six nuclear genes, the cytochrome b gene, the whole msp1 gene and block 14 of the msp1 gene between (SGS1) and (GRW4) (X-axis) and between (SGS1) and on Y-axis.
Figure 5Maximum likelihood consensus phylogeny of the translated msp1 gene from 12 different malaria species. Numbers on the branches represent bootstrap values based on 1,000 iterations.