Literature DB >> 24166390

A genetic linkage map for Pinus radiata based on RFLP, RAPD, and microsatellite markers.

M E Devey1, J C Bell, D N Smith, D B Neale, G F Moran.   

Abstract

A genetic linkage map for radiata pine (Pinus radiata D. Don) has been constructed using segregation data from a three-generation outbred pedigree. A total of 208 loci were analyzed including 165 restriction fragment length polymorphism (RFLP), 41 random amplified polymorphic DNA (RAPD) and 2 microsatellite markers. The markers were assembled into 22 linkage groups of 2 or more loci and covered a total distance of 1382 cM. Thirteen loci were unlinked to any other marker. Of the RFLP loci that were mapped, 93 were detected by loblolly pine (P. taeda L.) cDNA probes that had been previously mapped or evaluated in that species. The remaining 72 RFLP loci were detected by radiata pine probes from a PstI genomic DNA library. Two hundred and eighty RAPD primers were evaluated, and 41 loci which were segregating in a 1∶1 ratio were mapped. Two microsatellite markers were also placed on the map. This map and the markers derived from it will have wide applicability to genetic studies in P. radiata and other pine species.

Entities:  

Year:  1996        PMID: 24166390     DOI: 10.1007/BF00226088

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN: 0040-5752            Impact factor:   5.699


  21 in total

1.  High density molecular linkage maps of the tomato and potato genomes.

Authors:  S D Tanksley; M W Ganal; J P Prince; M C de Vicente; M W Bonierbale; P Broun; T M Fulton; J J Giovannoni; S Grandillo; G B Martin
Journal:  Genetics       Date:  1992-12       Impact factor: 4.562

2.  Identification of genetic factors contributing to heterosis in a hybrid from two elite maize inbred lines using molecular markers.

Authors:  C W Stuber; S E Lincoln; D W Wolff; T Helentjaris; E S Lander
Journal:  Genetics       Date:  1992-11       Impact factor: 4.562

3.  Tagging genes for blast resistance in rice via linkage to RFLP markers.

Authors:  Z H Yu; D J Mackill; J M Bonman; S D Tanksley
Journal:  Theor Appl Genet       Date:  1991-04       Impact factor: 5.699

4.  Inheritance of RAPDs in F1 hybrids of corn.

Authors:  M Heun; T Helentjaris
Journal:  Theor Appl Genet       Date:  1993-02       Impact factor: 5.699

5.  DNA polymorphisms amplified by arbitrary primers are useful as genetic markers.

Authors:  J G Williams; A R Kubelik; K J Livak; J A Rafalski; S V Tingey
Journal:  Nucleic Acids Res       Date:  1990-11-25       Impact factor: 16.971

6.  Mendelian factors underlying quantitative traits in tomato: comparison across species, generations, and environments.

Authors:  A H Paterson; S Damon; J D Hewitt; D Zamir; H D Rabinowitch; S E Lincoln; E S Lander; S D Tanksley
Journal:  Genetics       Date:  1991-01       Impact factor: 4.562

7.  DrawMap: a computer program for drawing genetic linkage maps.

Authors:  J W van Ooijen
Journal:  J Hered       Date:  1994 Jan-Feb       Impact factor: 2.645

8.  Comparative genome mapping of Sorghum and maize.

Authors:  R Whitkus; J Doebley; M Lee
Journal:  Genetics       Date:  1992-12       Impact factor: 4.562

9.  Mapped DNA probes from loblolly pine can be used for restriction fragment length polymorphism mapping in other conifers.

Authors:  M R Ahuja; M E Devey; A T Groover; K D Jermstad; D B Neale
Journal:  Theor Appl Genet       Date:  1994-06       Impact factor: 5.699

10.  An RFLP linkage map for loblolly pine based on a three-generation outbred pedigree.

Authors:  M E Devey; T A Fiddler; B H Liu; S J Knapp; D B Neale
Journal:  Theor Appl Genet       Date:  1994-06       Impact factor: 5.699

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  11 in total

1.  Detection and verification of quantitative trait loci for resistance to Dothistroma needle blight in Pinus radiata.

Authors:  M E Devey; K A Groom; M F Nolan; J C Bell; M J Dudzinski; K M Old; A C Matheson; G F Moran
Journal:  Theor Appl Genet       Date:  2004-01-16       Impact factor: 5.699

2.  Nearly complete genetic maps of Pinus sylvestris L. (Scots pine) constructed by AFLP marker analysis in a full-sib family.

Authors:  T-M Yin; X-R Wang; B Andersson; E Lerceteau-Köhler
Journal:  Theor Appl Genet       Date:  2003-02-21       Impact factor: 5.699

3.  Genetic structure of a widespread alpine shrub Rhododendron aureum (Ericaceae) across East Asia.

Authors:  Maria A Polezhaeva; Natalya A Tikhonova; Elena A Marchuk; Makar V Modorov; Maryana N Ranyuk; Alexey N Polezhaev; Natalya K Badmayeva; Vladimir L Semerikov
Journal:  J Plant Res       Date:  2021-01-04       Impact factor: 2.629

4.  QTL associations for density and diameter in Pinus radiata and the potential for marker-aided selection.

Authors:  M E Devey; S D Carson; M F Nolan; A C Matheson; C Te Riini; J Hohepa
Journal:  Theor Appl Genet       Date:  2003-12-05       Impact factor: 5.699

5.  Comparing EST-based genetic maps between Pinus sylvestris and Pinus taeda.

Authors:  P Komulainen; G R Brown; M Mikkonen; A Karhu; M R García-Gil; D O'Malley; B Lee; D B Neale; O Savolainen
Journal:  Theor Appl Genet       Date:  2003-06-25       Impact factor: 5.699

6.  Mobile genetic elements explain size variation in the mitochondrial genomes of four closely-related Armillaria species.

Authors:  Anna I Kolesnikova; Yuliya A Putintseva; Evgeniy P Simonov; Vladislav V Biriukov; Natalya V Oreshkova; Igor N Pavlov; Vadim V Sharov; Dmitry A Kuzmin; James B Anderson; Konstantin V Krutovsky
Journal:  BMC Genomics       Date:  2019-05-08       Impact factor: 3.969

7.  Application of Microsatellite Loci for Molecular Identification of Elite Genotypes, Analysis of Clonality, and Genetic Diversity in Aspen Populus tremula L. (Salicaceae).

Authors:  Dmitry V Politov; Maryana M Belokon; Yuri S Belokon; Tatyana A Polyakova; Anna V Shatokhina; Elena A Mudrik; Anna B Azarova; Mikhail V Filippov; Konstantin A Shestibratov
Journal:  Int J Plant Genomics       Date:  2015-12-28

8.  Reproducible genomic DNA preparation from diverse crop species for molecular genetic applications.

Authors:  Kelvin T Chiong; Mona B Damaj; Carmen S Padilla; Carlos A Avila; Shankar R Pant; Kranthi K Mandadi; Ninfa R Ramos; Denise V Carvalho; T Erik Mirkov
Journal:  Plant Methods       Date:  2017-12-02       Impact factor: 4.993

9.  Molecular Identification and Karyological Analysis of a Rampant Aspen Populus tremula L. (Salicaceae) Clone.

Authors:  Dmitry V Politov; Yuri S Belokon; Anna V Shatokhina; Maryana M Belokon; Nail A Khanov; Elena A Mudrik; Tatyana A Polyakova; Anna B Azarova; Konstantin A Shestibratov
Journal:  Int J Plant Genomics       Date:  2017-04-23

10.  De novo sequencing, assembly and functional annotation of Armillaria borealis genome.

Authors:  Vasilina S Akulova; Vadim V Sharov; Anastasiya I Aksyonova; Yuliya A Putintseva; Natalya V Oreshkova; Sergey I Feranchuk; Dmitry A Kuzmin; Igor N Pavlov; Yulia A Litovka; Konstantin V Krutovsky
Journal:  BMC Genomics       Date:  2020-09-10       Impact factor: 3.969

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