Literature DB >> 24162225

Relatedness measured by oligonucleotide probe DNA fingerprints and an estimate of the mating system of Sea Lavender (Limonium carolinianum).

M B Hamilton1, D M Rand.   

Abstract

Using DNA fingerprint markers within species and populations of wild plants requires information on the relationship between fingerprint similarity and relatedness. We identified a hypervariable marker based on oliog(GATA)4-hybridization of DpnII-cut genomic DNA from Sea Lavender (Limonium carolinianum). Banding patterns were somatically stable and highly variable among unrelated individuals. Band molecular-weight sizing errors (as a percent of band molecular weight) were estimated at 0.44%±0.003 within gels and 0.76%±0.964 between gels. Band sizing errors defined a 99% confidence bin of ±0.95% (1.90% total) of molecular weight. Band-sharing estimates were based on this bin size and on variance estimates that compensate for non-independent comparisons. Band-sharing among nine unrelated individuals (θ) was 0.198±0.O11. Experimental pollinations designed to produce selfed, fulland half-sib progeny groups led to five selfed progeny groups and no outcrossed progeny (mean band-sharing, ovS=0.468±0.074). A linear regression between band-sharing (S) and relatedness (r) assuming 17% inbreeding was r=0.006+0.914*S (R(2)=0.973) and established the maximum amount of inbreeding. ovS(0.392±0.022) estimated from wild pollinated seeds from four maternal families was intermediate to unrelated individuals and experimental selfed progeny, giving evidence for mixed mating in wild plants. More extensive plant pedigrees with known levels of inbreeding will be needed to measure variation in the relationship between S and r among populations and families.

Entities:  

Year:  1996        PMID: 24162225     DOI: 10.1007/BF00225753

Source DB:  PubMed          Journal:  Theor Appl Genet        ISSN: 0040-5752            Impact factor:   5.699


  16 in total

1.  Fixed-bin analysis for statistical evaluation of continuous distributions of allelic data from VNTR loci, for use in forensic comparisons.

Authors:  B Budowle; A M Giusti; J S Waye; F S Baechtel; R M Fourney; D E Adams; L A Presley; H A Deadman; K L Monson
Journal:  Am J Hum Genet       Date:  1991-05       Impact factor: 11.025

2.  A simple method for subcloning DNA fragments from gel slices.

Authors:  D M Heery; F Gannon; R Powell
Journal:  Trends Genet       Date:  1990-06       Impact factor: 11.639

3.  EXAMINATION OF POPULATION STRUCTURE IN RED-COCKADED WOODPECKERS USING DNA PROFILES.

Authors:  Susan M Haig; James R Belthoff; David H Allen
Journal:  Evolution       Date:  1993-02       Impact factor: 3.694

4.  Estimation of relatedness by DNA fingerprinting.

Authors:  M Lynch
Journal:  Mol Biol Evol       Date:  1988-09       Impact factor: 16.240

5.  Sizing bands on autoradiograms: a study of precision for scoring DNA fingerprints.

Authors:  D A Galbraith; P T Boag; H L Gibbs; B N White
Journal:  Electrophoresis       Date:  1991 Feb-Mar       Impact factor: 3.535

6.  Genetic similarity using DNA fingerprinting in cattle to determine relationship coefficient.

Authors:  H Mannen; S Tsuji; F Mukai; N Goto; S Ohtagaki
Journal:  J Hered       Date:  1993 May-Jun       Impact factor: 2.645

7.  DNA fingerprinting in Speke's gazelle: a test for genetic distinctness, and the correlation between relatedness and similarity.

Authors:  M A Butler; A R Templeton; B Read
Journal:  Mol Ecol       Date:  1994-08       Impact factor: 6.185

Review 8.  Multilocus DNA fingerprinting and genetic relatedness in plants: a case study with banana and tomato.

Authors:  K Weising; J Ramser; D Kaemmer; G Kahl
Journal:  EXS       Date:  1994

9.  Plant DNA fingerprinting with radioactive and digoxigenated oligonucleotide probes complementary to simple repetitive DNA sequences.

Authors:  K Weising; B Beyermann; J Ramser; G Kahl
Journal:  Electrophoresis       Date:  1991 Feb-Mar       Impact factor: 3.535

10.  Phylogenetic relationships between cultivated and wild species of the genusBeta revealed by DNA "fingerprinting".

Authors:  C Jung; K Pillen; L Frese; S Fähr; A E Melchinger
Journal:  Theor Appl Genet       Date:  1993-05       Impact factor: 5.699

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