Literature DB >> 24158806

GPCR & company: databases and servers for GPCRs and interacting partners.

Noga Kowalsman1, Masha Y Niv.   

Abstract

G-protein-coupled receptors (GPCRs) are a large superfamily of membrane receptors that are involved in a wide range of signaling pathways. To fulfill their tasks, GPCRs interact with a variety of partners, including small molecules, lipids and proteins. They are accompanied by different proteins during all phases of their life cycle. Therefore, GPCR interactions with their partners are of great interest in basic cell-signaling research and in drug discovery.Due to the rapid development of computers and internet communication, knowledge and data can be easily shared within the worldwide research community via freely available databases and servers. These provide an abundance of biological, chemical and pharmacological information.This chapter describes the available web resources for investigating GPCR interactions. We review about 40 freely available databases and servers, and provide a few sentences about the essence and the data they supply. For simplification, the databases and servers were grouped under the following topics: general GPCR-ligand interactions; particular families of GPCRs and their ligands; GPCR oligomerization; GPCR interactions with intracellular partners; and structural information on GPCRs. In conclusion, a multitude of useful tools are currently available. Summary tables are provided to ease navigation between the numerous and partially overlapping resources. Suggestions for future enhancements of the online tools include the addition of links from general to specialized databases and enabling usage of user-supplied template for GPCR structural modeling.

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Year:  2014        PMID: 24158806     DOI: 10.1007/978-94-007-7423-0_9

Source DB:  PubMed          Journal:  Adv Exp Med Biol        ISSN: 0065-2598            Impact factor:   2.622


  3 in total

1.  GPCR-PEnDB: a database of protein sequences and derived features to facilitate prediction and classification of G protein-coupled receptors.

Authors:  Khodeza Begum; Jonathon E Mohl; Fredrick Ayivor; Eder E Perez; Ming-Ying Leung
Journal:  Database (Oxford)       Date:  2020-11-20       Impact factor: 3.451

Review 2.  Trends in application of advancing computational approaches in GPCR ligand discovery.

Authors:  Siyu Zhu; Meixian Wu; Ziwei Huang; Jing An
Journal:  Exp Biol Med (Maywood)       Date:  2021-02-27

3.  GPCR-ModSim: A comprehensive web based solution for modeling G-protein coupled receptors.

Authors:  Mauricio Esguerra; Alexey Siretskiy; Xabier Bello; Jessica Sallander; Hugo Gutiérrez-de-Terán
Journal:  Nucleic Acids Res       Date:  2016-05-10       Impact factor: 16.971

  3 in total

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