Literature DB >> 24152285

Mass spectrometry-based quantitative proteomics for dissecting multiplexed redox cysteine modifications in nitric oxide-protected cardiomyocyte under hypoxia.

Kuan-Ting Pan1, Yi-Yun Chen, Tsung-Hsien Pu, Yu-Shu Chao, Chun-Yi Yang, Ryan D Bomgarden, John C Rogers, Tzu-Ching Meng, Kay-Hooi Khoo.   

Abstract

AIMS: Distinctive states of redox-dependent cysteine (Cys) modifications are known to regulate signaling homeostasis under various pathophysiological conditions, including myocardial injury or protection in response to ischemic stress. Recent evidence further implicates a dynamic interplay among these modified forms following changes in cellular redox environment. However, a precise delineation of multiplexed Cys modifications in a cellular context remains technically challenging. To this end, we have now developed a mass spectrometry (MS)-based quantitative approach using a set of novel iodoacetyl-based Cys-reactive isobaric tags (irreversible isobaric iodoacetyl Cys-reactive tandem mass tag [iodoTMT]) endowed with unique irreversible Cys-reactivities.
RESULTS: We have established a sequential iodoTMT-switch procedure coupled with efficient immunoenrichment and advanced shotgun liquid chromatography-MS/MS analysis. This workflow allows us to differentially quantify the multiple redox-modified forms of a Cys site in the original cellular context. In one single analysis, we have identified over 260 Cys sites showing quantitative differences in multiplexed redox modifications from the total lysates of H9c2 cardiomyocytes experiencing hypoxia in the absence and presence of S-nitrosoglutathione (GSNO), indicative of a distinct pattern of individual susceptibility to S-nitrosylation or S-glutathionylation. Among those most significantly affected are proteins functionally implicated in hypoxic damage from which we showed that GSNO would protect. INNOVATION: We demonstrate for the first time how quantitative analysis of various Cys-redox modifications occurring in biological samples can be performed precisely and simultaneously at proteomic levels.
CONCLUSION: We have not only developed a new approach to map global Cys-redoxomic regulation in vivo, but also provided new evidences implicating Cys-redox modifications of key molecules in NO-mediated ischemic cardioprotection.

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Year:  2013        PMID: 24152285      PMCID: PMC3936484          DOI: 10.1089/ars.2013.5326

Source DB:  PubMed          Journal:  Antioxid Redox Signal        ISSN: 1523-0864            Impact factor:   8.401


  73 in total

1.  Structural profiling of endogenous S-nitrosocysteine residues reveals unique features that accommodate diverse mechanisms for protein S-nitrosylation.

Authors:  Paschalis-Thomas Doulias; Jennifer L Greene; Todd M Greco; Margarita Tenopoulou; Steve H Seeholzer; Roland L Dunbrack; Harry Ischiropoulos
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-13       Impact factor: 11.205

2.  Undesirable charge-enhancement of isobaric tagged phosphopeptides leads to reduced identification efficiency.

Authors:  Tine E Thingholm; Giuseppe Palmisano; Frank Kjeldsen; Martin R Larsen
Journal:  J Proteome Res       Date:  2010-08-06       Impact factor: 4.466

3.  S-glutathionylation uncouples eNOS and regulates its cellular and vascular function.

Authors:  Chun-An Chen; Tse-Yao Wang; Saradhadevi Varadharaj; Levy A Reyes; Craig Hemann; M A Hassan Talukder; Yeong-Renn Chen; Lawrence J Druhan; Jay L Zweier
Journal:  Nature       Date:  2010-12-23       Impact factor: 49.962

4.  Quantification of protein sulfenic acid modifications using isotope-coded dimedone and iododimedone.

Authors:  Young Ho Seo; Kate S Carroll
Journal:  Angew Chem Int Ed Engl       Date:  2011-01-05       Impact factor: 15.336

5.  GProX, a user-friendly platform for bioinformatics analysis and visualization of quantitative proteomics data.

Authors:  Kristoffer T G Rigbolt; Jens T Vanselow; Blagoy Blagoev
Journal:  Mol Cell Proteomics       Date:  2011-05-20       Impact factor: 5.911

6.  Simultaneous measurement of protein oxidation and S-nitrosylation during preconditioning and ischemia/reperfusion injury with resin-assisted capture.

Authors:  Mark J Kohr; Junhui Sun; Angel Aponte; Guanghui Wang; Marjan Gucek; Elizabeth Murphy; Charles Steenbergen
Journal:  Circ Res       Date:  2010-12-30       Impact factor: 17.367

Review 7.  Chemical 'omics' approaches for understanding protein cysteine oxidation in biology.

Authors:  Stephen E Leonard; Kate S Carroll
Journal:  Curr Opin Chem Biol       Date:  2010-12-03       Impact factor: 8.822

Review 8.  The SNO-proteome: causation and classifications.

Authors:  Divya Seth; Jonathan S Stamler
Journal:  Curr Opin Chem Biol       Date:  2010-11-17       Impact factor: 8.822

Review 9.  Mapping the cysteine proteome: analysis of redox-sensing thiols.

Authors:  Dean P Jones; Young-Mi Go
Journal:  Curr Opin Chem Biol       Date:  2011-01-07       Impact factor: 8.822

10.  GAPDH mediates nitrosylation of nuclear proteins.

Authors:  Michael D Kornberg; Nilkantha Sen; Makoto R Hara; Krishna R Juluri; Judy Van K Nguyen; Adele M Snowman; Lindsey Law; Lynda D Hester; Solomon H Snyder
Journal:  Nat Cell Biol       Date:  2010-10-24       Impact factor: 28.824

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  32 in total

Review 1.  Redox Systems Biology: Harnessing the Sentinels of the Cysteine Redoxome.

Authors:  Jason M Held
Journal:  Antioxid Redox Signal       Date:  2019-09-09       Impact factor: 8.401

2.  Characteristic tandem mass spectral features under various collision chemistries for site-specific identification of protein S-glutathionylation.

Authors:  Chi-Chi Chou; Bing-Yu Chiang; Jason Ching-Yao Lin; Kuan-Ting Pan; Chun-Hung Lin; Kay-Hooi Khoo
Journal:  J Am Soc Mass Spectrom       Date:  2014-11-06       Impact factor: 3.109

3.  Proteomic Identification of Protein Glutathionylation in Cardiomyocytes.

Authors:  Garrett C VanHecke; Maheeshi Yapa Abeywardana; Young-Hoon Ahn
Journal:  J Proteome Res       Date:  2019-03-11       Impact factor: 4.466

Review 4.  The Expanding Landscape of the Thiol Redox Proteome.

Authors:  Jing Yang; Kate S Carroll; Daniel C Liebler
Journal:  Mol Cell Proteomics       Date:  2015-10-30       Impact factor: 5.911

5.  Sample multiplexing with cysteine-selective approaches: cysDML and cPILOT.

Authors:  Liqing Gu; Adam R Evans; Renã A S Robinson
Journal:  J Am Soc Mass Spectrom       Date:  2015-01-15       Impact factor: 3.109

Review 6.  Assessing Cardiac Metabolism: A Scientific Statement From the American Heart Association.

Authors:  Heinrich Taegtmeyer; Martin E Young; Gary D Lopaschuk; E Dale Abel; Henri Brunengraber; Victor Darley-Usmar; Christine Des Rosiers; Robert Gerszten; Jan F Glatz; Julian L Griffin; Robert J Gropler; Hermann-Georg Holzhuetter; Jorge R Kizer; E Douglas Lewandowski; Craig R Malloy; Stefan Neubauer; Linda R Peterson; Michael A Portman; Fabio A Recchia; Jennifer E Van Eyk; Thomas J Wang
Journal:  Circ Res       Date:  2016-03-24       Impact factor: 17.367

7.  High-throughput endogenous measurement of S-nitrosylation in Alzheimer's disease using oxidized cysteine-selective cPILOT.

Authors:  Liqing Gu; Renã A S Robinson
Journal:  Analyst       Date:  2016-05-06       Impact factor: 4.616

8.  A Quantitative Tissue-Specific Landscape of Protein Redox Regulation during Aging.

Authors:  Haopeng Xiao; Mark P Jedrychowski; Devin K Schweppe; Edward L Huttlin; Qing Yu; David E Heppner; Jiaming Li; Jiani Long; Evanna L Mills; John Szpyt; Zhixiang He; Guangyan Du; Ryan Garrity; Anita Reddy; Laura Pontano Vaites; Joao A Paulo; Tinghu Zhang; Nathanael S Gray; Steven P Gygi; Edward T Chouchani
Journal:  Cell       Date:  2020-02-27       Impact factor: 41.582

Review 9.  A Review on Quantitative Multiplexed Proteomics.

Authors:  Nishant Pappireddi; Lance Martin; Martin Wühr
Journal:  Chembiochem       Date:  2019-04-18       Impact factor: 3.164

Review 10.  Proteomic approaches to quantify cysteine reversible modifications in aging and neurodegenerative diseases.

Authors:  Liqing Gu; Renã A S Robinson
Journal:  Proteomics Clin Appl       Date:  2016-11-11       Impact factor: 3.494

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