Literature DB >> 24149797

Unexpected reactivity and mechanism of carboxamide activation in bacterial N-linked protein glycosylation.

Christian Lizak1, Sabina Gerber, Gaëlle Michaud, Mario Schubert, Yao-Yun Fan, Monika Bucher, Tamis Darbre, Markus Aebi, Jean-Louis Reymond, Kaspar P Locher.   

Abstract

The initial glycan transfer in asparagine-linked protein glycosylation is catalysed by the integral membrane enzyme oligosaccharyltransferase (OST). Here we study the mechanism of the bacterial PglB protein, a single-subunit OST, using chemically synthesized acceptor peptide analogues. We find that PglB can glycosylate not only asparagine but also glutamine, homoserine and the hydroxamate Asp(NHOH), although at much lower rates. In contrast, N-methylated asparagine or 2,4-diaminobutanoic acid (Dab) are not glycosylated. We find that of the various peptide analogues, only asparagine- or Dab-containing peptides bind tightly to PglB. Glycopeptide products are unable to bind, providing the driving force of product release. We find no suitably positioned residues near the active site of PglB that can activate the acceptor asparagine by deprotonation, making a general base mechanism unlikely and leaving carboxamide twisting as the most likely mechanistic proposal for asparagine activation.

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Year:  2013        PMID: 24149797     DOI: 10.1038/ncomms3627

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  17 in total

1.  Structures of aminoarabinose transferase ArnT suggest a molecular basis for lipid A glycosylation.

Authors:  Vasileios I Petrou; Carmen M Herrera; Kathryn M Schultz; Oliver B Clarke; Jérémie Vendome; David Tomasek; Surajit Banerjee; Kanagalaghatta R Rajashankar; Meagan Belcher Dufrisne; Brian Kloss; Edda Kloppmann; Burkhard Rost; Candice S Klug; M Stephen Trent; Lawrence Shapiro; Filippo Mancia
Journal:  Science       Date:  2016-02-05       Impact factor: 47.728

2.  Structure and Reactivity of Highly Twisted N-Acylimidazoles.

Authors:  Elizabeth A Stone; Brandon Q Mercado; Scott J Miller
Journal:  Org Lett       Date:  2019-03-12       Impact factor: 6.005

3.  Structures of the Most Twisted Thioamide and Selenoamide: Effect of Higher Chalcogens of Twisted Amides on N-C(X) Resonance.

Authors:  Qun Zhao; Guangchen Li; Pradeep Nareddy; Frank Jordan; Roger Lalancette; Roman Szostak; Michal Szostak
Journal:  Angew Chem Int Ed Engl       Date:  2022-07-26       Impact factor: 16.823

Review 4.  Acyclic Twisted Amides.

Authors:  Guangrong Meng; Jin Zhang; Michal Szostak
Journal:  Chem Rev       Date:  2021-08-18       Impact factor: 72.087

Review 5.  Chemoenzymatic Methods for the Synthesis of Glycoproteins.

Authors:  Chao Li; Lai-Xi Wang
Journal:  Chem Rev       Date:  2018-08-24       Impact factor: 60.622

6.  Substrate specificity of cytoplasmic N-glycosyltransferase.

Authors:  Andreas Naegeli; Gaëlle Michaud; Mario Schubert; Chia-Wei Lin; Christian Lizak; Tamis Darbre; Jean-Louis Reymond; Markus Aebi
Journal:  J Biol Chem       Date:  2014-06-24       Impact factor: 5.157

7.  Structure and mechanism of an active lipid-linked oligosaccharide flippase.

Authors:  Camilo Perez; Sabina Gerber; Jérémy Boilevin; Monika Bucher; Tamis Darbre; Markus Aebi; Jean-Louis Reymond; Kaspar P Locher
Journal:  Nature       Date:  2015-08-12       Impact factor: 49.962

8.  A catalytically essential motif in external loop 5 of the bacterial oligosaccharyltransferase PglB.

Authors:  Christian Lizak; Sabina Gerber; Daria Zinne; Gaëlle Michaud; Mario Schubert; Fan Chen; Monika Bucher; Tamis Darbre; Renato Zenobi; Jean-Louis Reymond; Kaspar P Locher
Journal:  J Biol Chem       Date:  2013-11-25       Impact factor: 5.157

9.  A β-hairpin epitope as novel structural requirement for protein arginine rhamnosylation.

Authors:  Liubov Yakovlieva; Thomas M Wood; Johan Kemmink; Ioli Kotsogianni; Franziska Koller; Jürgen Lassak; Nathaniel I Martin; Marthe T C Walvoort
Journal:  Chem Sci       Date:  2020-12-07       Impact factor: 9.825

10.  General N-and O-Linked Glycosylation of Lipoproteins in Mycoplasmas and Role of Exogenous Oligosaccharide.

Authors:  James M Daubenspeck; David S Jordan; Warren Simmons; Matthew B Renfrow; Kevin Dybvig
Journal:  PLoS One       Date:  2015-11-23       Impact factor: 3.240

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