Literature DB >> 24275651

A catalytically essential motif in external loop 5 of the bacterial oligosaccharyltransferase PglB.

Christian Lizak1, Sabina Gerber, Daria Zinne, Gaëlle Michaud, Mario Schubert, Fan Chen, Monika Bucher, Tamis Darbre, Renato Zenobi, Jean-Louis Reymond, Kaspar P Locher.   

Abstract

Asparagine-linked glycosylation is a post-translational protein modification that is conserved in all domains of life. The initial transfer of a lipid-linked oligosaccharide (LLO) onto acceptor asparagines is catalyzed by the integral membrane protein oligosaccharyltransferase (OST). The previously reported structure of a single-subunit OST enzyme, the Campylobacter lari protein PglB, revealed a partially disordered external loop (EL5), whose role in catalysis was unclear. We identified a new and functionally important sequence motif in EL5 containing a conserved tyrosine residue (Tyr293) whose aromatic side chain is essential for catalysis. A synthetic peptide containing the conserved motif can partially but specifically rescue in vitro activity of mutated PglB lacking Tyr293. Using site-directed disulfide cross-linking, we show that disengagement of the structurally ordered part of EL5 is an essential step of the glycosylation reaction, probably by allowing sequon binding or glyco-product release. Our findings define two distinct mechanistic roles of EL5 in OST-catalyzed glycosylation. These functions, exerted by the two halves of EL5, are independent, because the loop can be cleaved by specific proteolysis with only slight reduction in activity.

Entities:  

Keywords:  Campylobacter; Cysteine-mediated Cross-linking; Enzyme Catalysis; Enzyme Kinetics; Enzyme Mechanisms; Glycoprotein Biosynthesis; Glycosyltransferases; Membrane Enzymes; Oligosaccharide; Protein Structure

Mesh:

Substances:

Year:  2013        PMID: 24275651      PMCID: PMC3887201          DOI: 10.1074/jbc.M113.524751

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  43 in total

1.  Crystal structures of an archaeal oligosaccharyltransferase provide insights into the catalytic cycle of N-linked protein glycosylation.

Authors:  Shunsuke Matsumoto; Atsushi Shimada; James Nyirenda; Mayumi Igura; Yoshiaki Kawano; Daisuke Kohda
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-14       Impact factor: 11.205

2.  Recommendations for the presentation of NMR structures of proteins and nucleic acids. IUPAC-IUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid Structures Determined by NMR Spectroscopy.

Authors:  J L Markley; A Bax; Y Arata; C W Hilbers; R Kaptein; B D Sykes; P E Wright; K Wüthrich
Journal:  J Biomol NMR       Date:  1998-07       Impact factor: 2.835

3.  Mechanism of bacterial oligosaccharyltransferase: in vitro quantification of sequon binding and catalysis.

Authors:  Sabina Gerber; Christian Lizak; Gaëlle Michaud; Monika Bucher; Tamis Darbre; Markus Aebi; Jean-Louis Reymond; Kaspar P Locher
Journal:  J Biol Chem       Date:  2013-02-04       Impact factor: 5.157

Review 4.  Extreme sweetness: protein glycosylation in archaea.

Authors:  Jerry Eichler
Journal:  Nat Rev Microbiol       Date:  2013-01-28       Impact factor: 60.633

Review 5.  Protein glycosylation in Archaea: sweet and extreme.

Authors:  Doron Calo; Lina Kaminski; Jerry Eichler
Journal:  Glycobiology       Date:  2010-04-05       Impact factor: 4.313

Review 6.  An evolving view of the eukaryotic oligosaccharyltransferase.

Authors:  Daniel J Kelleher; Reid Gilmore
Journal:  Glycobiology       Date:  2005-11-29       Impact factor: 4.313

7.  A sensitive green fluorescent protein biomarker of N-glycosylation site occupancy.

Authors:  Marie-Estelle Losfeld; Francesca Soncin; Bobby G Ng; Ilyas Singec; Hudson H Freeze
Journal:  FASEB J       Date:  2012-06-12       Impact factor: 5.191

8.  All in one: Leishmania major STT3 proteins substitute for the whole oligosaccharyltransferase complex in Saccharomyces cerevisiae.

Authors:  Farnoush Parsaie Nasab; Benjamin L Schulz; Francisco Gamarro; Armando J Parodi; Markus Aebi
Journal:  Mol Biol Cell       Date:  2008-07-02       Impact factor: 4.138

9.  Characterization of the structurally diverse N-linked glycans of Campylobacter species.

Authors:  Adrian J Jervis; Jonathan A Butler; Andrew J Lawson; Rebecca Langdon; Brendan W Wren; Dennis Linton
Journal:  J Bacteriol       Date:  2012-03-02       Impact factor: 3.490

Review 10.  Biological roles of oligosaccharides: all of the theories are correct.

Authors:  A Varki
Journal:  Glycobiology       Date:  1993-04       Impact factor: 4.313

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  11 in total

1.  Transmembrane motions of PglB induced by LLO are coupled with EL5 loop conformational changes necessary for OST activity.

Authors:  Hui Sun Lee; Wonpil Im
Journal:  Glycobiology       Date:  2017-08-01       Impact factor: 4.313

2.  The structure of an archaeal oligosaccharyltransferase provides insight into the strict exclusion of proline from the N-glycosylation sequon.

Authors:  Yuya Taguchi; Takahiro Yamasaki; Marie Ishikawa; Yuki Kawasaki; Ryuji Yukimura; Maki Mitani; Kunio Hirata; Daisuke Kohda
Journal:  Commun Biol       Date:  2021-08-05

3.  Structure and mechanism of an active lipid-linked oligosaccharide flippase.

Authors:  Camilo Perez; Sabina Gerber; Jérémy Boilevin; Monika Bucher; Tamis Darbre; Markus Aebi; Jean-Louis Reymond; Kaspar P Locher
Journal:  Nature       Date:  2015-08-12       Impact factor: 49.962

4.  Increased efficiency of Campylobacter jejuni N-oligosaccharyltransferase PglB by structure-guided engineering.

Authors:  Julian Ihssen; Jürgen Haas; Michael Kowarik; Luzia Wiesli; Michael Wacker; Torsten Schwede; Linda Thöny-Meyer
Journal:  Open Biol       Date:  2015-04       Impact factor: 6.411

5.  Characterization of the single-subunit oligosaccharyltransferase STT3A from Trypanosoma brucei using synthetic peptides and lipid-linked oligosaccharide analogs.

Authors:  Ana S Ramírez; Jérémy Boilevin; Rasomoy Biswas; Bee Ha Gan; Daniel Janser; Markus Aebi; Tamis Darbre; Jean-Louis Reymond; Kaspar P Locher
Journal:  Glycobiology       Date:  2017-06-01       Impact factor: 4.313

6.  Functional analysis of N-linking oligosaccharyl transferase enzymes encoded by deep-sea vent proteobacteria.

Authors:  Dominic C Mills; Adrian J Jervis; Sherif Abouelhadid; Laura E Yates; Jon Cuccui; Dennis Linton; Brendan W Wren
Journal:  Glycobiology       Date:  2015-11-26       Impact factor: 4.313

Review 7.  Advances in understanding glycosyltransferases from a structural perspective.

Authors:  Tracey M Gloster
Journal:  Curr Opin Struct Biol       Date:  2014-09-19       Impact factor: 6.809

8.  Structural basis of the molecular ruler mechanism of a bacterial glycosyltransferase.

Authors:  Ana S Ramírez; Jérémy Boilevin; Ahmad Reza Mehdipour; Gerhard Hummer; Tamis Darbre; Jean-Louis Reymond; Kaspar P Locher
Journal:  Nat Commun       Date:  2018-01-31       Impact factor: 14.919

9.  Chemo-enzymatic synthesis of lipid-linked GlcNAc2Man5 oligosaccharides using recombinant Alg1, Alg2 and Alg11 proteins.

Authors:  Ana S Ramírez; Jérémy Boilevin; Chia-Wei Lin; Bee Ha Gan; Daniel Janser; Markus Aebi; Tamis Darbre; Jean-Louis Reymond; Kaspar P Locher
Journal:  Glycobiology       Date:  2017-08-01       Impact factor: 4.313

10.  Structure of bacterial oligosaccharyltransferase PglB bound to a reactive LLO and an inhibitory peptide.

Authors:  Maja Napiórkowska; Jérémy Boilevin; Tamis Darbre; Jean-Louis Reymond; Kaspar P Locher
Journal:  Sci Rep       Date:  2018-11-02       Impact factor: 4.379

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