Literature DB >> 24146545

Revolving images and multi-image keys open new horizons in descriptive taxonomy: ZooKeys working examples.

Pavel Stoev1, Lyubomir Penev, Nesrine Akkari, David Koon-Bong Cheung, Henrik Enghoff, Adam Brunke, Carina Mara de Souza, Thomas Pape, Daniel Mietchen, Terry Erwin.   

Abstract

Entities:  

Year:  2013        PMID: 24146545      PMCID: PMC3800819          DOI: 10.3897/zookeys.328.6171

Source DB:  PubMed          Journal:  Zookeys        ISSN: 1313-2970            Impact factor:   1.546


× No keyword cloud information.
Illustrations are indispensable in the recognition of species, irrespective of whether they are used for taxonomic, biological or conservational purposes. With the development of Web 2.0 and Open Access publishing, the demand for image quality and methods for visualizing taxonomic traits has significantly increased. Since its launch in 2008, ZooKeys has been supporting the development of new methods in taxonomy and advocating new tools for the visualization of taxonomic content. Publishing interactive keys as part of taxonomic revisions has become a routine practice for the journal (see e.g., Sharkey et al. 2009a, b, van Noort and Johnson 2009, Stoev et al. 2010, Cerretti et al. 2012). With the development of the journal’s web platform, ZooKeys has also started to support the publication of various types of multimedia and audio records, either as supplementary materials or as files embedded in the paper itself (see e.g. Hertz et al. 2012, Faulwetter et al. 2013, Akkari et al. 2013). A novel approach for the visualization of taxonomic traits exemplified by a modern revision of millipedes of the genus is published in this issue of ZooKeys (Akkari et al. 2013), along with a detailed technical description and applied workflow (Cheung et al. 2013). It presents an innovative case study aiming to overcome the challenges faced by taxonomists in describing the complex structures essential for species description and identification. The authors use multiple techniques, including an interactive key and a new rotatable scanning electron microscope (rSEM) model to meet these challenges. They present a key design which prioritizes the visual delivery of taxonomic information via interactive media, including line drawings, photographs and scanning electron micrographs of the male genitalia (gonopods). The development of rSEM is widely accessible, requiring no more than access to a scanning electron microscope and some form of software for image integration (Flash, Java Script based programs, etc.). This technique is used for the first time to enhance taxonomic descriptions and allows the structure in question to be seen from multiple angles of view. The yet slow rate of utilization and acceleration of multimedia in taxonomic research is very likely due to the perception that sophisticated imaging requires special software, e-infrastructure, and significant funding. The method applied here proves that wrong as it enables the visualization of important taxonomic characters in great detail from various angles and can be achieved comparatively effortlessly with conventional technology and software. In addition to providing new insights on the application of SEM and bringing a touch of modernism to taxonomic studies in general, the use of detailed rotating illustrations for small and complex anatomical structures, such as millipede genitalia, revealed diagnostic characters that would have remained unnoticed with conventional methods. The use of these rSEM as a replacement for static illustrations in taxonomic revisions puts us one step closer to the development of a software capable of automatically extracting morphological character data from images of organisms and providing users with the species name (La Salle et al. 2009). Though conceived only to better visualize surface structures, the rSEM model is in a way proving that creating three-dimensional imaging libraries and virtual specimen collections is possible, with a rapid access to “cybertypes,” a term recently introduced by Faulwetter et al. (2013).
  6 in total

1.  The centipede genus Eupolybothrus Verhoeff, 1907 (Chilopoda: Lithobiomorpha: Lithobiidae) in North Africa, a cybertaxonomic revision, with a key to all species in the genus and the first use of DNA barcoding for the group.

Authors:  Pavel Stoev; Nesrine Akkari; Marzio Zapparoli; David Porco; Henrik Enghoff; Gregory D Edgecombe; Teodor Georgiev; Lyubomir Penev
Journal:  Zookeys       Date:  2010-06-30       Impact factor: 1.546

2.  Micro-computed tomography: Introducing new dimensions to taxonomy.

Authors:  Sarah Faulwetter; Aikaterini Vasileiadou; Michail Kouratoras; Christos Arvanitidis
Journal:  Zookeys       Date:  2013-02-04       Impact factor: 1.546

3.  A new golden frog species of the genus Diasporus (Amphibia, Eleutherodactylidae) from the Cordillera Central, western Panama.

Authors:  Andreas Hertz; Frank Hauenschild; Sebastian Lotzkat; Gunther Köhler
Journal:  Zookeys       Date:  2012-05-21       Impact factor: 1.546

4.  MOSCHweb - a matrix-based interactive key to the genera of the Palaearctic Tachinidae (Insecta, Diptera).

Authors:  Pierfilippo Cerretti; Hans-Peter Tschorsnig; Massimo Lopresti; Filippo Di Giovanni
Journal:  Zookeys       Date:  2012-07-04       Impact factor: 1.546

5.  Rotational Scanning Electron Micrographs (rSEM): A novel and accessible tool to visualize and communicate complex morphology.

Authors:  David K-B Cheung; Adam J Brunke; Nesrine Akkari; Carina Mara Souza; Thomas Pape
Journal:  Zookeys       Date:  2013-09-03       Impact factor: 1.546

6.  Revolving SEM images visualising 3D taxonomic characters: application to six species of the millipede genus Ommatoiulus Latzel, 1884, with description of seven new species and an interactive key to the Tunisian members of the genus (Diplopoda, Julida, Julidae).

Authors:  Nesrine Akkari; David Koon-Bong Cheung; Henrik Enghoff; Pavel Stoev
Journal:  Zookeys       Date:  2013-09-03       Impact factor: 1.546

  6 in total
  2 in total

1.  Terry L. Erwin and the race to document biodiversity (1940-2020).

Authors:  Grace P Servat
Journal:  Zookeys       Date:  2021-06-16       Impact factor: 1.546

2.  Celebrating with the 'beetle' man: Terry Erwin's 75(th) birthday.

Authors: 
Journal:  Zookeys       Date:  2015-12-01       Impact factor: 1.546

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.