Literature DB >> 21594115

The centipede genus Eupolybothrus Verhoeff, 1907 (Chilopoda: Lithobiomorpha: Lithobiidae) in North Africa, a cybertaxonomic revision, with a key to all species in the genus and the first use of DNA barcoding for the group.

Pavel Stoev1, Nesrine Akkari, Marzio Zapparoli, David Porco, Henrik Enghoff, Gregory D Edgecombe, Teodor Georgiev, Lyubomir Penev.   

Abstract

The centipede genus Eupolybothrus Verhoeff, 1907 in North Africa is revised. A new cavernicolous species, Eupolybothruskahfi Stoev & Akkari, sp. n., is described from a cave in Jebel Zaghouan, northeast Tunisia. Morphologically, it is most closely related to Eupolybothrusnudicornis (Gervais, 1837) from North Africa and Southwest Europe but can be readily distinguished by the long antennae and leg-pair 15, a conical dorso-median protuberance emerging from the posterior part of prefemur 15, and the shape of the male first genital sternite. Molecular sequence data from the cytochrome c oxidase I gene (mtDNA-5' COI-barcoding fragment) exhibit 19.19% divergence between Eupolybothruskahfi and Eupolybothrusnudicornis, an interspecific value comparable to those observed among four other species of Eupolybothrus which, combined with a low intraspecific divergence (0.3-1.14%), supports the morphological diagnosis of Eupolybothruskahfi as a separate species. This is the first troglomorphic myriapod to be found in Tunisia, and the second troglomorph lithobiomorph centipede known from North Africa. Eupolybothrusnudicornis is redescribed based on abundant material from Tunisia and its post-embryonic development, distribution and habitat preferences recorded. Eupolybothruscloudsley-thompsoni Turk, 1955, a nominal species based on Tunisian type material, is placed in synonymy with Eupolybothrusnudicornis. To comply with the latest technological developments in publishing of biological information, the paper implements new approaches in cybertaxonomy, such as fine granularity XML tagging validated against the NLM DTD TaxPub for PubMedCentral and dissemination in XML to various aggregators (GBIF, EOL, Wikipedia), vizualisation of all taxa mentioned in the text via the dynamically created Pensoft Taxon Profile (PTP) page, data publishing, georeferencing of all localities via Google Earth, and ZooBank, GenBank and MorphBank registration of datasets. An interactive key to all valid species of Eupolybothrus is made with DELTA software.

Entities:  

Keywords:  Eupolybothrus kahfi sp. n.; Eupolybothrus nudicornis; North Africa; barcoding; cybertaxonomy; cytochrome c oxidase I gene; habitat preferences; interactive key; semantic enhancements; semantic tagging; troglomorphism

Year:  2010        PMID: 21594115      PMCID: PMC3088018          DOI: 10.3897/zookeys.50.504

Source DB:  PubMed          Journal:  Zookeys        ISSN: 1313-2970            Impact factor:   1.546


  9 in total

1.  Biological identifications through DNA barcodes.

Authors:  Paul D N Hebert; Alina Cywinska; Shelley L Ball; Jeremy R deWaard
Journal:  Proc Biol Sci       Date:  2003-02-07       Impact factor: 5.349

2.  Critical factors for assembling a high volume of DNA barcodes.

Authors:  Mehrdad Hajibabaei; Jeremy R deWaard; Natalia V Ivanova; Sujeevan Ratnasingham; Robert T Dooh; Stephanie L Kirk; Paula M Mackie; Paul D N Hebert
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2005-10-29       Impact factor: 6.237

3.  MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.

Authors:  Koichiro Tamura; Joel Dudley; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2007-05-07       Impact factor: 16.240

4.  The neighbor-joining method: a new method for reconstructing phylogenetic trees.

Authors:  N Saitou; M Nei
Journal:  Mol Biol Evol       Date:  1987-07       Impact factor: 16.240

5.  A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

Authors:  M Kimura
Journal:  J Mol Evol       Date:  1980-12       Impact factor: 2.395

6.  DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.

Authors:  O Folmer; M Black; W Hoeh; R Lutz; R Vrijenhoek
Journal:  Mol Mar Biol Biotechnol       Date:  1994-10

7.  Semantic tagging of and semantic enhancements to systematics papers: ZooKeys working examples.

Authors:  Lyubomir Penev; Donat Agosti; Teodor Georgiev; Terry Catapano; Jeremy Miller; Vladimir Blagoderov; David Roberts; Vincent S Smith; Irina Brake; Simon Ryrcroft; Ben Scott; Norman F Johnson; Robert A Morris; Guido Sautter; Vishwas Chavan; Tim Robertson; David Remsen; Pavel Stoev; Cynthia Parr; Sandra Knapp; W John Kress; Chris F Thompson; Terry Erwin
Journal:  Zookeys       Date:  2010-06-30       Impact factor: 1.546

8.  A common terminology for the external anatomy of centipedes (Chilopoda).

Authors:  Lucio Bonato; Gregory D Edgecombe; John G E Lewis; Alessandro Minelli; Luis A Pereira; Rowland M Shelley; Marzio Zapparoli
Journal:  Zookeys       Date:  2010-11-18       Impact factor: 1.546

9.  bold: The Barcode of Life Data System (http://www.barcodinglife.org).

Authors:  Sujeevan Ratnasingham; Paul D N Hebert
Journal:  Mol Ecol Notes       Date:  2007-05-01
  9 in total
  17 in total

1.  Semantic tagging of and semantic enhancements to systematics papers: ZooKeys working examples.

Authors:  Lyubomir Penev; Donat Agosti; Teodor Georgiev; Terry Catapano; Jeremy Miller; Vladimir Blagoderov; David Roberts; Vincent S Smith; Irina Brake; Simon Ryrcroft; Ben Scott; Norman F Johnson; Robert A Morris; Guido Sautter; Vishwas Chavan; Tim Robertson; David Remsen; Pavel Stoev; Cynthia Parr; Sandra Knapp; W John Kress; Chris F Thompson; Terry Erwin
Journal:  Zookeys       Date:  2010-06-30       Impact factor: 1.546

2.  Fast, linked, and open - the future of taxonomic publishing for plants: launching the journal PhytoKeys.

Authors:  Lyubomir Penev; W John Kress; Sandra Knapp; De-Zhu Li; Susanne Renner
Journal:  PhytoKeys       Date:  2010-11-01       Impact factor: 1.635

3.  ZooKeys 150: Three and a half years of innovative publishing and growth.

Authors:  Terry Erwin; Pavel Stoev; Teodor Georgiev; Lyubomir Penev
Journal:  Zookeys       Date:  2011-11-28       Impact factor: 1.546

4.  XML schemas and mark-up practices of taxonomic literature.

Authors:  Lyubomir Penev; Christopher Hc Lyal; Anna Weitzman; David R Morse; David King; Guido Sautter; Teodor Georgiev; Robert A Morris; Terry Catapano; Donat Agosti
Journal:  Zookeys       Date:  2011-11-28       Impact factor: 1.546

5.  At the end of the rope: Geophilushadesi sp. n. - the world's deepest cave-dwelling centipede (Chilopoda, Geophilomorpha, Geophilidae).

Authors:  Pavel Stoev; Nesrine Akkari; Ana Komerički; Gregory D Edgecombe; Lucio Bonato
Journal:  Zookeys       Date:  2015-06-30       Impact factor: 1.546

6.  A New Dimension in Documenting New Species: High-Detail Imaging for Myriapod Taxonomy and First 3D Cybertype of a New Millipede Species (Diplopoda, Julida, Julidae).

Authors:  Nesrine Akkari; Henrik Enghoff; Brian D Metscher
Journal:  PLoS One       Date:  2015-08-26       Impact factor: 3.240

7.  First results of the German Barcode of Life (GBOL) - Myriapoda project: Cryptic lineages in German Stenotaenialinearis (Koch, 1835) (Chilopoda, Geophilomorpha).

Authors:  Thomas Wesener; Karin Voigtländer; Peter Decker; Jan Philip Oeyen; Jörg Spelda; Norman Lindner
Journal:  Zookeys       Date:  2015-06-30       Impact factor: 1.546

8.  Molecular-based estimate of species number, phylogenetic relationships and divergence times for the genus Stenotaenia (Chilopoda, Geophilomorpha) in the Italian region.

Authors:  Laura Del Latte; Francesca Bortolin; Omar Rota-Stabelli; Giuseppe Fusco; Lucio Bonato
Journal:  Zookeys       Date:  2015-06-30       Impact factor: 1.546

9.  Revolving images and multi-image keys open new horizons in descriptive taxonomy: ZooKeys working examples.

Authors:  Pavel Stoev; Lyubomir Penev; Nesrine Akkari; David Koon-Bong Cheung; Henrik Enghoff; Adam Brunke; Carina Mara de Souza; Thomas Pape; Daniel Mietchen; Terry Erwin
Journal:  Zookeys       Date:  2013-09-03       Impact factor: 1.546

10.  Eupolybothrus cavernicolus Komerički & Stoev sp. n. (Chilopoda: Lithobiomorpha: Lithobiidae): the first eukaryotic species description combining transcriptomic, DNA barcoding and micro-CT imaging data.

Authors:  Pavel Stoev; Ana Komerički; Nesrine Akkari; Shanlin Liu; Xin Zhou; Alexander M Weigand; Jeroen Hostens; Christopher I Hunter; Scott C Edmunds; David Porco; Marzio Zapparoli; Teodor Georgiev; Daniel Mietchen; David Roberts; Sarah Faulwetter; Vincent Smith; Lyubomir Penev
Journal:  Biodivers Data J       Date:  2013-10-28
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