Literature DB >> 24145303

Crowded chromatin is not sufficient for heterochromatin formation and not required for its maintenance.

Andreas Walter1, Catherine Chapuis, Sébastien Huet, Jan Ellenberg.   

Abstract

In contrast to cytoplasmic organelles, which are usually separated from the rest of the cell by phospholipid membranes, nuclear compartments are readily accessible to diffusing proteins and must rely on different mechanisms to maintain their integrity. Specific interactions between scaffolding proteins are known to have important roles for the formation and maintenance of nuclear structures. General physical mechanisms such as molecular crowding, phase separation or colloidal behavior have also been suggested, but their physiological significance remains uncertain. For macromolecular crowding, a role in the maintenance of nucleoli and promyelocytic leukemia (PML) nuclear bodies has been shown. Here, we tested whether a modulation of the compaction state of chromatin, which directly influences the local crowding state, has an impact on the formation and maintenance of densely packed heterochromatin. By osmotic perturbations, we could modify the packing state of chromatin in a controlled manner and show that chromatin compaction, which is associated with increased crowding conditions, is not, per se, sufficient to initiate the formation of new bona fide heterochromatin structures nor is it necessary to maintain already established heterochromatin domains. In consequence, if an increase in crowding induced by chromatin compaction maybe an early step in heterochromatin formation, specific protein-protein interactions are nevertheless required to make heterochromatin long lasting and independent of the crowding state.
Copyright © 2013 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Cell nucleus; Chromatin; Fluorescence microscopy; Macromolecular crowding; Nuclear organelles; Osmotic perturbations

Mesh:

Substances:

Year:  2013        PMID: 24145303     DOI: 10.1016/j.jsb.2013.10.004

Source DB:  PubMed          Journal:  J Struct Biol        ISSN: 1047-8477            Impact factor:   2.867


  15 in total

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2.  Spatial relationship between chromosomal domains in diploid and autotetraploid Arabidopsis thaliana nuclei.

Authors:  H Sas-Nowosielska; T Bernas
Journal:  Nucleus       Date:  2016-04-25       Impact factor: 4.197

Review 3.  The redundancy of the mammalian heterochromatic compartment.

Authors:  Joan C Ritland Politz; David Scalzo; Mark Groudine
Journal:  Curr Opin Genet Dev       Date:  2015-12-17       Impact factor: 5.578

4.  Heterochromatin restricts the mobility of nuclear bodies.

Authors:  Eugene A Arifulin; Dmitry V Sorokin; Anna V Tvorogova; Margarita A Kurnaeva; Yana R Musinova; Oxana A Zhironkina; Sergey A Golyshev; Sergey S Abramchuk; Yegor S Vassetzky; Eugene V Sheval
Journal:  Chromosoma       Date:  2018-10-05       Impact factor: 4.316

5.  Unique C. elegans telomeric overhang structures reveal the evolutionarily conserved properties of telomeric DNA.

Authors:  Petra Školáková; Silvie Foldynová-Trantírková; Klára Bednářová; Radovan Fiala; Michaela Vorlíčková; Lukáš Trantírek
Journal:  Nucleic Acids Res       Date:  2015-04-08       Impact factor: 16.971

6.  The Role of Crowding Forces in Juxtaposing β-Globin Gene Domain Remote Regulatory Elements in Mouse Erythroid Cells.

Authors:  Arkadiy K Golov; Alexey A Gavrilov; Sergey V Razin
Journal:  PLoS One       Date:  2015-10-05       Impact factor: 3.240

7.  The poly(ADP-ribose)-dependent chromatin remodeler Alc1 induces local chromatin relaxation upon DNA damage.

Authors:  Hafida Sellou; Théo Lebeaupin; Catherine Chapuis; Rebecca Smith; Anna Hegele; Hari R Singh; Marek Kozlowski; Sebastian Bultmann; Andreas G Ladurner; Gyula Timinszky; Sébastien Huet
Journal:  Mol Biol Cell       Date:  2016-10-12       Impact factor: 4.138

8.  Density imaging of heterochromatin in live cells using orientation-independent-DIC microscopy.

Authors:  Ryosuke Imai; Tadasu Nozaki; Tomomi Tani; Kazunari Kaizu; Kayo Hibino; Satoru Ide; Sachiko Tamura; Koichi Takahashi; Michael Shribak; Kazuhiro Maeshima
Journal:  Mol Biol Cell       Date:  2017-08-23       Impact factor: 4.138

Review 9.  Weak interactions in higher-order chromatin organization.

Authors:  Omar L Kantidze; Sergey V Razin
Journal:  Nucleic Acids Res       Date:  2020-05-21       Impact factor: 16.971

10.  Entropic effect of macromolecular crowding enhances binding between nucleosome clutches in heterochromatin, but not in euchromatin.

Authors:  Inrok Oh; Saehyun Choi; YounJoon Jung; Jun Soo Kim
Journal:  Sci Rep       Date:  2018-04-03       Impact factor: 4.379

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