Literature DB >> 24140567

Solvent environments significantly affect the enzymatic function of Escherichia coli dihydrofolate reductase: comparison of wild-type protein and active-site mutant D27E.

Eiji Ohmae1, Yurina Miyashita, Shin-Ichi Tate, Kunihiko Gekko, Soichiro Kitazawa, Ryo Kitahara, Kunihiro Kuwajima.   

Abstract

To investigate the contribution of solvent environments to the enzymatic function of Escherichia coli dihydrofolate reductase (DHFR), the salt-, pH-, and pressure-dependence of the enzymatic function of the wild-type protein were compared with those of the active-site mutant D27E in relation to their structure and stability. The salt concentration-dependence of enzymatic activity indicated that inorganic cations bound to and inhibited the activity of wild-type DHFR at neutral pH. The BaCl2 concentration-dependence of the (1)H-(15)N HSQC spectra of the wild-type DHFR-folate binary complex showed that the cation-binding site was located adjacent to the Met20 loop. The insensitivity of the D27E mutant to univalent cations, the decreased optimal pH for its enzymatic activity, and the increased Km and Kd values for its substrate dihydrofolate suggested that the substrate-binding cleft of the mutant was slightly opened to expose the active-site side chain to the solvent. The marginally increased fluorescence intensity and decreased volume change due to unfolding of the mutant also supported this structural change or the modified cavity and hydration. Surprisingly, the enzymatic activity of the mutant increased with pressurization up to 250MPa together with negative activation volumes of -4.0 or -4.8mL/mol, depending on the solvent system, while that of the wild-type was decreased and had positive activation volumes of 6.1 or 7.7mL/mol. These results clearly indicate that the insertion of a single methylene at the active site could substantially change the enzymatic reaction mechanism of DHFR, and solvent environments play important roles in the function of this enzyme.
© 2013.

Entities:  

Keywords:  2-(N-morpholino)ethanesulfonic acid; 50mM MES, 25mM Tris 25mM ethanolamine (buffer); Active-site mutation; CD; CSM; Cavity and hydration; DHF; DHFR; Dihydrofolate reductase; Enzyme function; HSQC; High pressure; MES; MTE; MTE containing 100mM sodium chloride (buffer); MTEN; NMR; PEG; Pi; Solvent effect; THF; TMA; center of fluorescence spectral mass; circular dichroism; dihydrofolate; dihydrofolate reductase; heteronuclear single quantum correlation; nuclear magnetic resonance; phosphate; polyethylene glycol; tetrahydrofolate; tetramethylammonium

Mesh:

Substances:

Year:  2013        PMID: 24140567     DOI: 10.1016/j.bbapap.2013.09.024

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  12 in total

1.  Effects of salt on the structure, stability, and function of a halophilic dihydrofolate reductase from a hyperhalophilic archaeon, Haloarcula japonica strain TR-1.

Authors:  Yurina Miyashita; Eiji Ohmae; Kaoru Nakasone; Katsuo Katayanagi
Journal:  Extremophiles       Date:  2015-01-24       Impact factor: 2.395

2.  Halophilic mechanism of the enzymatic function of a moderately halophilic dihydrofolate reductase from Haloarcula japonica strain TR-1.

Authors:  Yurina Miyashita; Eiji Ohmae; Teikichi Ikura; Kaoru Nakasone; Katsuo Katayanagi
Journal:  Extremophiles       Date:  2017-03-27       Impact factor: 2.395

3.  Adaptations for Pressure and Temperature Effects on Loop Motion in Escherichia coli and Moritella profunda Dihydrofolate Reductase.

Authors:  Qi Huang; Jocelyn M Rodgers; Russell J Hemley; Toshiko Ichiye
Journal:  High Press Res       Date:  2019-03-05       Impact factor: 1.431

4.  Crowders Steal Dihydrofolate Reductase Ligands through Quinary Interactions.

Authors:  Michael R Duff; Nidhi Desai; Michael A Craig; Pratul K Agarwal; Elizabeth E Howell
Journal:  Biochemistry       Date:  2019-02-18       Impact factor: 3.162

5.  Quasiharmonic Analysis of the Energy Landscapes of Dihydrofolate Reductase from Piezophiles and Mesophiles.

Authors:  Qi Huang; Jocelyn M Rodgers; Russell J Hemley; Toshiko Ichiye
Journal:  J Phys Chem B       Date:  2018-02-08       Impact factor: 2.991

Review 6.  Enzymes from piezophiles.

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Journal:  Semin Cell Dev Biol       Date:  2018-02-01       Impact factor: 7.727

7.  Pressure adaptation of 3-isopropylmalate dehydrogenase from an extremely piezophilic bacterium is attributed to a single amino acid substitution.

Authors:  Yuki Hamajima; Takayuki Nagae; Nobuhisa Watanabe; Eiji Ohmae; Yasuyuki Kato-Yamada; Chiaki Kato
Journal:  Extremophiles       Date:  2016-02-05       Impact factor: 2.395

8.  How adding a single methylene to dihydrofolate reductase can change its conformational dynamics.

Authors:  Ryan W Penhallurick; Alliyah Harold; Maya D Durnal; Toshiko Ichiye
Journal:  J Chem Phys       Date:  2021-04-28       Impact factor: 3.488

9.  Cofactor-Mediated Conformational Dynamics Promote Product Release From Escherichia coli Dihydrofolate Reductase via an Allosteric Pathway.

Authors:  David Oyen; R Bryn Fenwick; Robyn L Stanfield; H Jane Dyson; Peter E Wright
Journal:  J Am Chem Soc       Date:  2015-07-14       Impact factor: 15.419

10.  Thermal stabilization of dihydrofolate reductase using monte carlo unfolding simulations and its functional consequences.

Authors:  Jian Tian; Jaie C Woodard; Anna Whitney; Eugene I Shakhnovich
Journal:  PLoS Comput Biol       Date:  2015-04-23       Impact factor: 4.475

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