Literature DB >> 24139989

Conformational dynamics inside amino-terminal disease hotspot of ryanodine receptor.

Xiaowei Zhong1, Ying Liu, Li Zhu, Xing Meng, Ruiwu Wang, Filip Van Petegem, Terence Wagenknecht, S R Wayne Chen, Zheng Liu.   

Abstract

The N-terminal region of both skeletal and cardiac ryanodine receptor is a disease mutation hotspot. Recently, a crystal structure of the RyR1 fragment (residues 1-559) was solved. This N-terminal structure contains three separate domains, A, B, and C, and was docked into a central vestibule in a full-length RyR1 cryo-EM map. Here, we reconstructed three-dimensional cryo-EM structures of two GFP-tagged RyR2s with GFP inserted after residue Glu-310 and Ser-437, respectively. The structures of RyR2E310-GFP and RyR2S437-GFP displayed an extra mass on domain B and C, directly validating the predicted docking model. Next, we revealed domain movements in molecular dynamics flexible fitting models in both the closed and open state cryo-EM maps. To further probe the conformational changes, we generated FRET pairs by inserting CFP or YFP in two selected domains, FRET studies of three dual-insertion pairs and three co-expressed single-insertion pairs showed the dynamic structural changes within the N-terminal domains.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 24139989      PMCID: PMC3826818          DOI: 10.1016/j.str.2013.09.004

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  37 in total

1.  The skeletal muscle Ca2+ release channel has an oxidoreductase-like domain.

Authors:  Matthew L Baker; Irina I Serysheva; Serap Sencer; Yili Wu; Steven J Ludtke; Wen Jiang; Susan L Hamilton; Wah Chiu
Journal:  Proc Natl Acad Sci U S A       Date:  2002-09-06       Impact factor: 11.205

Review 2.  Arrhythmogenic right ventricular cardiomyopathy/dysplasia: a not so rare "disease of the desmosome" with multiple clinical presentations.

Authors:  Thomas Herren; Philipp A Gerber; Firat Duru
Journal:  Clin Res Cardiol       Date:  2009-02-09       Impact factor: 5.460

3.  Flexible fitting of atomic structures into electron microscopy maps using molecular dynamics.

Authors:  Leonardo G Trabuco; Elizabeth Villa; Kakoli Mitra; Joachim Frank; Klaus Schulten
Journal:  Structure       Date:  2008-05       Impact factor: 5.006

Review 4.  Mutations in RYR1 in malignant hyperthermia and central core disease.

Authors:  Rachel Robinson; Danielle Carpenter; Marie-Anne Shaw; Jane Halsall; Philip Hopkins
Journal:  Hum Mutat       Date:  2006-10       Impact factor: 4.878

5.  The predicted TM10 transmembrane sequence of the cardiac Ca2+ release channel (ryanodine receptor) is crucial for channel activation and gating.

Authors:  Ruiwu Wang; Jeff Bolstad; Huihui Kong; Lin Zhang; Cindy Brown; S R Wayne Chen
Journal:  J Biol Chem       Date:  2003-10-30       Impact factor: 5.157

6.  Location of divergent region 2 on the three-dimensional structure of cardiac muscle ryanodine receptor/calcium release channel.

Authors:  Zheng Liu; Jing Zhang; Ruiwu Wang; S R Wayne Chen; Terence Wagenknecht
Journal:  J Mol Biol       Date:  2004-04-30       Impact factor: 5.469

7.  Crystal structures of the N-terminal domains of cardiac and skeletal muscle ryanodine receptors: insights into disease mutations.

Authors:  Paolo Antonio Lobo; Filip Van Petegem
Journal:  Structure       Date:  2009-11-11       Impact factor: 5.006

8.  Structural and functional conservation of key domains in InsP3 and ryanodine receptors.

Authors:  Min-Duk Seo; Saroj Velamakanni; Noboru Ishiyama; Peter B Stathopulos; Ana M Rossi; Samir A Khan; Philippa Dale; Congmin Li; James B Ames; Mitsuhiko Ikura; Colin W Taylor
Journal:  Nature       Date:  2012-01-29       Impact factor: 49.962

9.  Disease mutations in the ryanodine receptor N-terminal region couple to a mobile intersubunit interface.

Authors:  Lynn Kimlicka; Kelvin Lau; Ching-Chieh Tung; Filip Van Petegem
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

10.  Coordinated movement of cytoplasmic and transmembrane domains of RyR1 upon gating.

Authors:  Montserrat Samsó; Wei Feng; Isaac N Pessah; P D Allen
Journal:  PLoS Biol       Date:  2009-04-14       Impact factor: 8.029

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  8 in total

1.  Roles of the NH2-terminal domains of cardiac ryanodine receptor in Ca2+ release activation and termination.

Authors:  Yingjie Liu; Bo Sun; Zhichao Xiao; Ruiwu Wang; Wenting Guo; Joe Z Zhang; Tao Mi; Yundi Wang; Peter P Jones; Filip Van Petegem; S R Wayne Chen
Journal:  J Biol Chem       Date:  2015-01-27       Impact factor: 5.157

Review 2.  Structural and physico-chemical effects of disease and non-disease nsSNPs on proteins.

Authors:  Tugba G Kucukkal; Marharyta Petukh; Lin Li; Emil Alexov
Journal:  Curr Opin Struct Biol       Date:  2015-02-04       Impact factor: 6.809

Review 3.  A guide to the 3D structure of the ryanodine receptor type 1 by cryoEM.

Authors:  Montserrat Samsó
Journal:  Protein Sci       Date:  2016-10-13       Impact factor: 6.725

Review 4.  Structures of the colossal RyR1 calcium release channel.

Authors:  Oliver B Clarke; Wayne A Hendrickson
Journal:  Curr Opin Struct Biol       Date:  2016-09-27       Impact factor: 6.809

5.  Cardiac arrest in a mother and daughter and the identification of a novel RYR2 variant, predisposing to low penetrant catecholaminergic polymorphic ventricular tachycardia in a four-generation Canadian family.

Authors:  Matthew Tung; Filip Van Petegem; Samantha Lauson; Ashley Collier; Kathy Hodgkinson; Bridget Fernandez; Sean Connors; Rick Leather; Shubhayan Sanatani; Laura Arbour
Journal:  Mol Genet Genomic Med       Date:  2020-01-28       Impact factor: 2.183

6.  Probing Interdomain Linkers and Protein Supertertiary Structure In Vitro and in Live Cells with Fluorescent Protein Resonance Energy Transfer.

Authors:  Sujit Basak; Nabanita Sakia; Laura Dougherty; Zhuojun Guo; Fang Wu; Frank Mindlin; Jeffrey W Lary; James L Cole; Feng Ding; Mark E Bowen
Journal:  J Mol Biol       Date:  2021-01-01       Impact factor: 5.469

7.  Crystal structures of ryanodine receptor SPRY1 and tandem-repeat domains reveal a critical FKBP12 binding determinant.

Authors:  Zhiguang Yuchi; Siobhan M Wong King Yuen; Kelvin Lau; Ainsley Q Underhill; Razvan L Cornea; James D Fessenden; Filip Van Petegem
Journal:  Nat Commun       Date:  2015-08-06       Impact factor: 14.919

Review 8.  Structure and Function of the Human Ryanodine Receptors and Their Association with Myopathies-Present State, Challenges, and Perspectives.

Authors:  Vladena Bauerová-Hlinková; Dominika Hajdúchová; Jacob A Bauer
Journal:  Molecules       Date:  2020-09-04       Impact factor: 4.411

  8 in total

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