Literature DB >> 24139653

The connectomics challenge.

Ludovico Silvestri, Leonardo Sacconi, Francesco Saverio Pavone.   

Abstract

One of the most fascinating challenges in neuroscience is the reconstruction of the connectivity map of the brain. Recent years have seen a rapid expansion in the field of connectomics, whose aim is to trace this map and understand its relationship with neural computation. Many different approaches, ranging from electron and optical microscopy to magnetic resonance imaging, have been proposed to address the connectomics challenge on various spatial scales and in different species. Here, we review the main technological advances in the microscopy techniques applied to connectomics, highlighting the potential and limitations of the different methods. Finally, we briefly discuss the role of connectomics in the Human Brain Project, the Future and Emerging Technologies (FET) Flagship recently approved by the European Commission.

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Mesh:

Year:  2013        PMID: 24139653      PMCID: PMC3812743          DOI: 10.11138/FNeur/2013.28.3.167

Source DB:  PubMed          Journal:  Funct Neurol        ISSN: 0393-5264


  63 in total

Review 1.  Mind blindness and the brain in autism.

Authors:  U Frith
Journal:  Neuron       Date:  2001-12-20       Impact factor: 17.173

2.  Propagation stability of self-reconstructing Bessel beams enables contrast-enhanced imaging in thick media.

Authors:  Florian O Fahrbach; Alexander Rohrbach
Journal:  Nat Commun       Date:  2012-01-17       Impact factor: 14.919

Review 3.  Deep tissue two-photon microscopy.

Authors:  Fritjof Helmchen; Winfried Denk
Journal:  Nat Methods       Date:  2005-12       Impact factor: 28.547

4.  Serial section scanning electron microscopy of adult brain tissue using focused ion beam milling.

Authors:  Graham Knott; Herschel Marchman; David Wall; Ben Lich
Journal:  J Neurosci       Date:  2008-03-19       Impact factor: 6.167

Review 5.  Selective plane illumination microscopy techniques in developmental biology.

Authors:  Jan Huisken; Didier Y R Stainier
Journal:  Development       Date:  2009-06       Impact factor: 6.868

Review 6.  Seven challenges for neuroscience.

Authors:  Henry Markram
Journal:  Funct Neurol       Date:  2013 Jul-Sep

7.  Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.

Authors:  Hans-Ulrich Dodt; Ulrich Leischner; Anja Schierloh; Nina Jährling; Christoph Peter Mauch; Katrin Deininger; Jan Michael Deussing; Matthias Eder; Walter Zieglgänsberger; Klaus Becker
Journal:  Nat Methods       Date:  2007-03-25       Impact factor: 28.547

Review 8.  The brain dopaminergic system. Pharmacological, behavioural and electrophysiological studies.

Authors:  B Y Glenthøj
Journal:  Dan Med Bull       Date:  1995-02

9.  Chemical clearing and dehydration of GFP expressing mouse brains.

Authors:  Klaus Becker; Nina Jährling; Saiedeh Saghafi; Reto Weiler; Hans-Ulrich Dodt
Journal:  PLoS One       Date:  2012-03-30       Impact factor: 3.240

10.  Serial two-photon tomography for automated ex vivo mouse brain imaging.

Authors:  Timothy Ragan; Lolahon R Kadiri; Kannan Umadevi Venkataraju; Karsten Bahlmann; Jason Sutin; Julian Taranda; Ignacio Arganda-Carreras; Yongsoo Kim; H Sebastian Seung; Pavel Osten
Journal:  Nat Methods       Date:  2012-01-15       Impact factor: 28.547

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  9 in total

Review 1.  Realistic modeling of neurons and networks: towards brain simulation.

Authors:  Egidio D'Angelo; Sergio Solinas; Jesus Garrido; Claudia Casellato; Alessandra Pedrocchi; Jonathan Mapelli; Daniela Gandolfi; Francesca Prestori
Journal:  Funct Neurol       Date:  2013 Jul-Sep

Review 2.  Whole-Brain Microscopy Meets In Vivo Neuroimaging: Techniques, Benefits, and Limitations.

Authors:  Markus Aswendt; Martin Schwarz; Walid M Abdelmoula; Jouke Dijkstra; Stefanie Dedeurwaerdere
Journal:  Mol Imaging Biol       Date:  2017-02       Impact factor: 3.488

3.  Chronobiological correlates of headache: three decades on.

Authors:  Michele Viana; Giuseppe Nappi
Journal:  Funct Neurol       Date:  2014 Jul-Sep

4.  Impact of C24:0 on actin-microtubule interaction in human neuronal SK-N-BE cells: evaluation by FRET confocal spectral imaging microscopy after dual staining with rhodamine-phalloidin and tubulin tracker green.

Authors:  Amira Zarrouk; Thomas Nury; Aurélien Dauphin; Perrine Frère; Jean-Marc Riedinger; Claude-Marie Bachelet; Frédérique Frouin; Thibault Moreau; Mohamed Hammami; Edmond Kahn; Gérard Lizard
Journal:  Funct Neurol       Date:  2015 Jan-Mar

Review 5.  Brain investigation and brain conceptualization.

Authors:  Alberto Redolfi; Paolo Bosco; David Manset; Giovanni B Frisoni
Journal:  Funct Neurol       Date:  2013 Jul-Sep

Review 6.  Visible rodent brain-wide networks at single-neuron resolution.

Authors:  Jing Yuan; Hui Gong; Anan Li; Xiangning Li; Shangbin Chen; Shaoqun Zeng; Qingming Luo
Journal:  Front Neuroanat       Date:  2015-05-28       Impact factor: 3.856

Review 7.  About connections.

Authors:  Kathleen S Rockland
Journal:  Front Neuroanat       Date:  2015-05-20       Impact factor: 3.856

8.  Differential involvement of cortical and cerebellar areas using dominant and nondominant hands: An FMRI study.

Authors:  Adnan A S Alahmadi; Matteo Pardini; Rebecca S Samson; Egidio D'Angelo; Karl J Friston; Ahmed T Toosy; Claudia A M Gandini Wheeler-Kingshott
Journal:  Hum Brain Mapp       Date:  2015-09-29       Impact factor: 5.038

9.  Prediction of Neural Diameter From Morphology to Enable Accurate Simulation.

Authors:  Jonathan D Reed; Kim T Blackwell
Journal:  Front Neuroinform       Date:  2021-06-03       Impact factor: 4.081

  9 in total

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