Literature DB >> 24136534

An improved detergent-compatible gel-fractionation LC-LTQ-Orbitrap-MS workflow for plant and microbial proteomics.

Luis Valledor1, Wolfram Weckwerth.   

Abstract

In proteomics, liquid chromatography coupled to mass spectrometry (LC-MS/MS) is an invaluable technique to accurately identify and quantify large sets of proteins. In this chapter we show a time-effective, and detergent compatible, Ge-LC-LTQ-Orbitrap/MS proteomics workflow. The compatibility of this protocol with high concentrations of detergents significantly increases the extraction yield and the abundance of membrane proteins while gel fractionation increases the number of protein identifications. In our hands this workflow allows the identification of more than 1,500 proteins per sample, harvesting less than 20 mg of fresh weight, in many different organisms such as Chlamydomonas, Cyanothece, Arabidopsis, or Nicotiana, various microbes and enriched microbial samples.

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Year:  2014        PMID: 24136534     DOI: 10.1007/978-1-62703-631-3_25

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  17 in total

1.  Integrated Physiological, Proteomic, and Metabolomic Analysis of Ultra Violet (UV) Stress Responses and Adaptation Mechanisms in Pinus radiata.

Authors:  Jesús Pascual; María Jesús Cañal; Mónica Escandón; Mónica Meijón; Wolfram Weckwerth; Luis Valledor
Journal:  Mol Cell Proteomics       Date:  2017-01-17       Impact factor: 5.911

2.  Proteomics and comparative genomics of Nitrososphaera viennensis reveal the core genome and adaptations of archaeal ammonia oxidizers.

Authors:  Melina Kerou; Pierre Offre; Luis Valledor; Sophie S Abby; Michael Melcher; Matthias Nagler; Wolfram Weckwerth; Christa Schleper
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-18       Impact factor: 11.205

3.  Protocol for Enrichment of the Membrane Proteome of Mature Tomato Pollen.

Authors:  Puneet Paul; Palak Chaturvedi; Anida Mesihovic; Arindam Ghatak; Wolfram Weckwerth; Enrico Schleiff
Journal:  Bio Protoc       Date:  2017-06-05

4.  Chlamydomonas sp. UWO 241 Exhibits High Cyclic Electron Flow and Rewired Metabolism under High Salinity.

Authors:  Isha Kalra; Xin Wang; Marina Cvetkovska; Jooyeon Jeong; William McHargue; Ru Zhang; Norman Hüner; Joshua S Yuan; Rachael Morgan-Kiss
Journal:  Plant Physiol       Date:  2020-03-30       Impact factor: 8.340

5.  Systemic cold stress adaptation of Chlamydomonas reinhardtii.

Authors:  Luis Valledor; Takeshi Furuhashi; Anne-Mette Hanak; Wolfram Weckwerth
Journal:  Mol Cell Proteomics       Date:  2013-04-05       Impact factor: 5.911

6.  Comprehensive cell-specific protein analysis in early and late pollen development from diploid microsporocytes to pollen tube growth.

Authors:  Till Ischebeck; Luis Valledor; David Lyon; Stephanie Gingl; Matthias Nagler; Mónica Meijón; Volker Egelhofer; Wolfram Weckwerth
Journal:  Mol Cell Proteomics       Date:  2013-09-27       Impact factor: 5.911

7.  System-level network analysis of nitrogen starvation and recovery in Chlamydomonas reinhardtii reveals potential new targets for increased lipid accumulation.

Authors:  Luis Valledor; Takeshi Furuhashi; Luis Recuenco-Muñoz; Stefanie Wienkoop; Wolfram Weckwerth
Journal:  Biotechnol Biofuels       Date:  2014-12-24       Impact factor: 6.040

8.  Spatial distribution of proteins and metabolites in developing wheat grain and their differential regulatory response during the grain filling process.

Authors:  Shuang Zhang; Arindam Ghatak; Mitra Mohammadi Bazargani; Prasad Bajaj; Rajeev K Varshney; Palak Chaturvedi; Dong Jiang; Wolfram Weckwerth
Journal:  Plant J       Date:  2021-08-14       Impact factor: 7.091

9.  Dataset of UV induced changes in nuclear proteome obtained by GeLC-Orbitrap/MS in Pinus radiata needles.

Authors:  Sara Alegre; Jesús Pascual; Matthias Nagler; Wolfram Weckwerth; María Jesús Cañal; Luis Valledor
Journal:  Data Brief       Date:  2016-04-07

10.  Metabolomic and Proteomic Profiles Reveal the Dynamics of Primary Metabolism during Seed Development of Lotus (Nelumbo nucifera).

Authors:  Lei Wang; Jinlei Fu; Ming Li; Lena Fragner; Wolfram Weckwerth; Pingfang Yang
Journal:  Front Plant Sci       Date:  2016-06-07       Impact factor: 5.753

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