| Literature DB >> 24132156 |
Young Hoon Lee1, Jack M Harrowfield, Jong Won Shin, Mi Seon Won, Elisabeth Rukmini, Shinya Hayami, Kil Sik Min, Yang Kim.
Abstract
Use of Hirshfeld surfaces calculated from crystal structure determinations on various transition metal ionEntities:
Mesh:
Substances:
Year: 2013 PMID: 24132156 PMCID: PMC3821640 DOI: 10.3390/ijms141020729
Source DB: PubMed Journal: Int J Mol Sci ISSN: 1422-0067 Impact factor: 5.923
Figure 1Ligands used to form the crystalline complexes described in the present work, for which R = CH3.
Figure 2(a) Reciprocal π-type interactions (dashed lines) between trimethoxyphenyl- and pyridyl-group carbon atoms of cations (stick representations; H-atoms not shown) with Co…Co 10.621(3) Å within the lattice of [Co(L1)2](BF4)2·CH3CN·0.5H2O; (b) Bridging of the same pair of cations as in (a) via interactions with tetrafluoroborate anions of both CH…F (blue and white dashed lines) and F…π (black and white dashed lines) types.
Figure 3(a) Portion of the chain formed by bridging of pairs of antiparallel CH3CN dipoles by CH…F interactions (blue and white dashed lines) with F…H 2.570(2) and 2.564(2) Å for the two bonds of a given F. The nitrile-C…C-nitrile contacts, 3.267(6) Å, are shown as black and white dashed lines; (b) π-interactions involved in the bridging of two cations with Co…Co 13.947(6) Å by every one of the CH3CN pairs shown in (a). One of the nitrile-N…HC interactions involving a methoxyl group of a third adjacent cation is also shown.
Figure 4Partial representation of the interactions of methoxy groups on one terminus of a cation within the lattice of [Fe(L1)2](ClO4)2·CH3CN. For clarity, only half each of the three other cations containing groups in interaction with those of the first are shown. The contacts indicated by the black and white dashed lines involve CH…O, CH…N, CH…π and O…π interactions.
Figure 5(a) A partial view of the sheet of cations lying parallel to the (0 1 2) plane in the lattice of [Co(L2)2](ClO4)2·H2O, showing the side-by-side chains of cations apparently linked through stacking interactions; (b) Contacts within the closer, centrosymmetric pairs of cations of a given chain indicated from the Hirshfeld surface to be significant π interactions. Alkynyl-C…C-alkynyl is 3.296(7), alkynyl-C…C-aromatic is 3.262(7) Å; (c) Weaker π-type interactions within the more remote centrosymmetric pair of a given chain—O…C 3.141(6), C…C 3.357(7) Å.
Figure 6Partial view of a chain of cations within the lattice of [Cd(L2)2](ClO4)2·CH3CN·Et2O showing, as black and white dashed lines, π interactions which involve the lattice solvent and anions as well as aromatic rings. All C…C contacts (3.31(7) Å) are the same within experimental error, while H2CH…C-aromatic is 2.78(4) Å and O3ClO…C-aromatic is 3.08(6) Å.
Figure 7A partial view of a sheet of cations in the lattice of [Cu(L3)2](ClO4)2·CH3CN lying parallel to the ac plane, showing the apparent partial retention of a terpyridine embrace in the sense that terpyridine units lie in relatively close parallel planes. To emphasize this arrangement, the trimethoxyphenylmethyleneoxy substituents (as well as lattice solvent and anions) are not shown.
Co–N bond lengths/Å in [Co(L3)2](BF4)2.
| Bond | 100(2) K (low spin) | 294(2) K (high spin) |
|---|---|---|
| Co–N1 | 1.983(1) | 2.138(3) |
| Co–N2 | 1.871(1) | 1.996(3) |
| Co–N3 | 2.002(1) | 2.119(4) |
| Co–N4 | 2.163(1) | 2.163(4) |
| Co–N5 | 1.935(1) | 1.997(3) |
| Co–N6 | 2.169(1) | 2.146(3) |
Figure 8A view (stick representation; H-atoms omitted) of the cation present in the lattice of [Co(L3)2](BF4)2 at 100(2) K, with atom labelling shown as used in the text.
Figure 9Temperature-dependent magnetic susceptibility measurements for [Co(L3)2](BF4)2.
Crystal and refinement data.
| [Fe(L1)2](ClO4)2·CH3CN | [Ni(L1)2](ClO4)2·CH3CN | [Co(L2)2](BF4)2·H2O | [Cd(L2)2](ClO4)2·CH3CN·Et2O | [Cu(L3)2](ClO4)2·CH3CN | [Co(L3)2](BF4)2 | [Co(L3)2](BF4)2 | |
|---|---|---|---|---|---|---|---|
| Empirical formula | C50H45Cl2FeN7O14 | C50H45Cl2N7NiO14 | C52H42B2CoF8N6O7 | C58H55CdCl2N7O15 | C54H52Cl2CuN8O16 | C50H46B2CoF8N6O8 | C50H46B2CoF8N6O8 |
| Formula weight | 1094.68 | 1097.54 | 1095.47 | 1273.39 | 1203.47 | 1091.48 | 1091.48 |
| Crystal system | Triclinic | Triclinic | Triclinic | Triclinic | Triclinic | Triclinic | Triclinic |
| Space group | |||||||
| Color | Violet | Brown | Brown | Green | Blue | Violet | Violet |
| Crystal size/mm3 | 0.30 × 0.20 × 0.10 | 0.20 × 0.15 × 0.05 | 0.60 × 0.20 × 0.20 | 0.40 × 0.20 ×0.20 | 0.25 × 0.05 × 0.05 | 0.15 × 0.10 × 0.04 | 0.15 × 0.10 × 0.04 |
| 9.5687(1) | 9.524(2) | 12.1236(7) | 11.679(2) | 9.468(2) | 12.913(3) | 13.195(3) | |
| 12.8164(2) | 12.744(3) | 14.1679(7) | 14.919(3) | 11.740(2) | 13.071(3) | 13.245(3) | |
| 20.6974(3) | 20.896(4) | 18.7880(9) | 18.546(4) | 25.516(5) | 15.749(3) | 16.037(3) | |
| α/° | 91.228(1) | 91.40(3) | 69.932(1) | 70.86(3) | 80.38(3) | 102.03(3) | 98.96(3) |
| β/° | 101.151(1) | 100.88(3) | 89.557(2) | 80.39(3) | 89.84(3) | 98.33(3) | 101.43(3) |
| γ/° | 107.052(1) | 106.62(3) | 71.613(2) | 74.71(3) | 76.99(3) | 107.56(3) | 108.45(3) |
| 2372.58(6) | 2378.3(9) | 2,858.1(3) | 2933.3(10) | 2722.7(10) | 2416.3(8) | 2532.8(9) | |
| 2 | 2 | 2 | 2 | 2 | 2 | 2 | |
| ρcalc/g cm−3 | 1.532 | 1.533 | 1.273 | 1.442 | 1.468 | 1.500 | 1.431 |
| λ/Å | 0.71073 | 0.62988 | 0.71073 | 0.6300 | 0.8000 | 0.65000 | 0.65000 |
| 173(2) | 102(2) | 153(2) | 102(2) | 102(2) | 100(2) | 294(2) | |
| μ/mm−1 | 0.509 | 0.432 | 0.378 | 0.389 | 0.796 | 0.448 | 0.428 |
| 1132 | 1136 | 1122 | 1308 | 1246 | 1122 | 1122 | |
| θmin-max | 1.67–28.35 | 1.765–33.388 | 3.00–27.47 | 1.83–29.49 | 0.46–29.59 | 1.55–33.28 | 1.22–27.09 |
| Reflections collected | 41,675 | 39,046 | 28,444 | 40,426 | 18,452 | 30,929 | 14,656 |
| Independent reflections ( | 11,681 (0.0481) | 19,720 (0.0215) | 13,012 (0.0594) | 20,465 (0.0102) | 9463 (0.0367) | 16.065 (0.0227) | 7942 (0.0336) |
| Reflections with | 8029 | 16,887 | 7570 | 19,871 | 7544 | 13,193 | 5658 |
| Goodness-of-fit on | 1.041 | 1.074 | 1.086 | 1.026 | 1.053 | 1.108 | 1.030 |
| Final R indices [ | 0.0433 | 0.0443 | 0.0536 | 0.0710 | |||
| 0.1258 | 0.1257 | 0.1493 | 0.2077 | ||||
| Final R indices [all data] | 0.0505 | 0.0451 | 0.0660 | 0.0942 | |||
| 0.1304 | 0.1581 | 0.2346 |
R1 = ∑||Fo| − |Fc||/∑|Fo|, wR2 = [∑w(Fo2 − Fc2)2/∑w(Fo2)2]1/2.