Literature DB >> 24123876

Identification of pathogenic gene variants in small families with intellectually disabled siblings by exome sequencing.

Janneke H M Schuurs-Hoeijmakers1, Anneke T Vulto-van Silfhout, Lisenka E L M Vissers, Ilse I G M van de Vondervoort, Bregje W M van Bon, Joep de Ligt, Christian Gilissen, Jayne Y Hehir-Kwa, Kornelia Neveling, Marisol del Rosario, Gausiya Hira, Santina Reitano, Aurelio Vitello, Pinella Failla, Donatella Greco, Marco Fichera, Ornella Galesi, Tjitske Kleefstra, Marie T Greally, Charlotte W Ockeloen, Marjolein H Willemsen, Ernie M H F Bongers, Irene M Janssen, Rolph Pfundt, Joris A Veltman, Corrado Romano, Michèl A Willemsen, Hans van Bokhoven, Han G Brunner, Bert B A de Vries, Arjan P M de Brouwer.   

Abstract

BACKGROUND: Intellectual disability (ID) is a common neurodevelopmental disorder affecting 1-3% of the general population. Mutations in more than 10% of all human genes are considered to be involved in this disorder, although the majority of these genes are still unknown.
OBJECTIVES: We investigated 19 small non-consanguineous families with two to five affected siblings in order to identify pathogenic gene variants in known, novel and potential ID candidate genes. Non-consanguineous families have been largely ignored in gene identification studies as small family size precludes prior mapping of the genetic defect. METHODS AND
RESULTS: Using exome sequencing, we identified pathogenic mutations in three genes, DDHD2, SLC6A8, and SLC9A6, of which the latter two have previously been implicated in X-linked ID phenotypes. In addition, we identified potentially pathogenic mutations in BCORL1 on the X-chromosome and in MCM3AP, PTPRT, SYNE1, and ZNF528 on autosomes.
CONCLUSIONS: We show that potentially pathogenic gene variants can be identified in small, non-consanguineous families with as few as two affected siblings, thus emphasising their value in the identification of syndromic and non-syndromic ID genes.

Entities:  

Keywords:  Genetics

Mesh:

Year:  2013        PMID: 24123876     DOI: 10.1136/jmedgenet-2013-101644

Source DB:  PubMed          Journal:  J Med Genet        ISSN: 0022-2593            Impact factor:   6.318


  42 in total

1.  Association analysis identifies new risk loci for congenital heart disease in Chinese populations.

Authors:  Yuan Lin; Xuejiang Guo; Bijun Zhao; Juanjuan Liu; Min Da; Yang Wen; Yuanli Hu; Bixian Ni; Kai Zhang; Shiwei Yang; Jing Xu; Juncheng Dai; Xiaowei Wang; Yankai Xia; Hongxia Ma; Guangfu Jin; Shiqiang Yu; Jiayin Liu; Bernard D Keavney; Judith A Goodship; Heather J Cordell; Xinru Wang; Hongbing Shen; Jiahao Sha; Zuomin Zhou; Yijiang Chen; Xuming Mo; Lingfei Luo; Zhibin Hu
Journal:  Nat Commun       Date:  2015-08-18       Impact factor: 14.919

2.  SCAMP5 plays a critical role in axonal trafficking and synaptic localization of NHE6 to adjust quantal size at glutamatergic synapses.

Authors:  Unghwi Lee; Chunghon Choi; Seung Hyun Ryu; Daehun Park; Sang-Eun Lee; Kitae Kim; Yujin Kim; Sunghoe Chang
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-12       Impact factor: 11.205

Review 3.  Next-Generation Sequencing in Intellectual Disability.

Authors:  Gemma L Carvill; Heather C Mefford
Journal:  J Pediatr Genet       Date:  2015-10-12

4.  Genetic Approach to Diagnosis of Intellectual Disability.

Authors:  Ratna Dua Puri; Moni Tuteja; I C Verma
Journal:  Indian J Pediatr       Date:  2016-09-13       Impact factor: 1.967

5.  Assorted dysfunctions of endosomal alkali cation/proton exchanger SLC9A6 variants linked to Christianson syndrome.

Authors:  Alina Ilie; Annie Boucher; Jaeok Park; Albert Marinus Berghuis; R Anne McKinney; John Orlowski
Journal:  J Biol Chem       Date:  2020-04-10       Impact factor: 5.157

6.  Biallelic MCM3AP mutations cause Charcot-Marie-Tooth neuropathy with variable clinical presentation.

Authors:  Mert Karakaya; Neda Mazaheri; Ipek Polat; Diana Bharucha-Goebel; Sandra Donkervoort; Reza Maroofian; Gholamreza Shariati; Irmgard Hoelker; Kristin Monaghan; Sara Winchester; Robert Zori; Hamid Galehdari; Carsten G Bönnemann; Uluc Yis; Brunhilde Wirth
Journal:  Brain       Date:  2017-10-01       Impact factor: 13.501

7.  Genetics of intellectual disability in consanguineous families.

Authors:  Hao Hu; Kimia Kahrizi; Hans-Hilger Ropers; Hossein Najmabadi; Luciana Musante; Zohreh Fattahi; Ralf Herwig; Masoumeh Hosseini; Cornelia Oppitz; Seyedeh Sedigheh Abedini; Vanessa Suckow; Farzaneh Larti; Maryam Beheshtian; Bettina Lipkowitz; Tara Akhtarkhavari; Sepideh Mehvari; Sabine Otto; Marzieh Mohseni; Sanaz Arzhangi; Payman Jamali; Faezeh Mojahedi; Maryam Taghdiri; Elaheh Papari; Mohammad Javad Soltani Banavandi; Saeide Akbari; Seyed Hassan Tonekaboni; Hossein Dehghani; Mohammad Reza Ebrahimpour; Ingrid Bader; Behzad Davarnia; Monika Cohen; Hossein Khodaei; Beate Albrecht; Sarah Azimi; Birgit Zirn; Milad Bastami; Dagmar Wieczorek; Gholamreza Bahrami; Krystyna Keleman; Leila Nouri Vahid; Andreas Tzschach; Jutta Gärtner; Gabriele Gillessen-Kaesbach; Jamileh Rezazadeh Varaghchi; Bernd Timmermann; Fatemeh Pourfatemi; Aria Jankhah; Wei Chen; Pooneh Nikuei; Vera M Kalscheuer; Morteza Oladnabi; Thomas F Wienker
Journal:  Mol Psychiatry       Date:  2018-01-04       Impact factor: 15.992

8.  An overview of inborn errors of complex lipid biosynthesis and remodelling.

Authors:  Foudil Lamari; Fanny Mochel; Jean-Marie Saudubray
Journal:  J Inherit Metab Dis       Date:  2014-09-20       Impact factor: 4.982

9.  Genetic and phenotypic diversity of NHE6 mutations in Christianson syndrome.

Authors:  Matthew F Pescosolido; David M Stein; Michael Schmidt; Christelle Moufawad El Achkar; Mark Sabbagh; Jeffrey M Rogg; Umadevi Tantravahi; Rebecca L McLean; Judy S Liu; Annapurna Poduri; Eric M Morrow
Journal:  Ann Neurol       Date:  2014-09-19       Impact factor: 10.422

Review 10.  Inborn errors of metabolism in the biosynthesis and remodelling of phospholipids.

Authors:  Saskia B Wortmann; Marc Espeel; Ligia Almeida; Annette Reimer; Dennis Bosboom; Frank Roels; Arjan P M de Brouwer; Ron A Wevers
Journal:  J Inherit Metab Dis       Date:  2014-09-02       Impact factor: 4.982

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