Literature DB >> 24123271

Expression of functional Plasmodium falciparum enzymes using a wheat germ cell-free system.

Devaraja G Mudeppa1, Pradipsinh K Rathod.   

Abstract

One decade after the sequencing of the Plasmodium falciparum genome, 95% of malaria proteins in the genome cannot be expressed in traditional cell-based expression systems, and the targets of the best new leads for antimalarial drug discovery are either not known or not available in functional form. For a disease that kills up to 1 million people per year, routine expression of recombinant malaria proteins in functional form is needed both for the discovery of new therapeutics and for identification of targets of new drugs. We tested the general utility of cell-free systems for expressing malaria enzymes. Thirteen test enzyme sequences were reverse amplified from total RNA, cloned into a plant-like expression vector, and subjected to cell-free expression in a wheat germ system. Protein electrophoresis and autoradiography confirmed the synthesis of products of expected molecular masses. In rare problematic cases, truncated products were avoided by using synthetic genes carrying wheat codons. Scaled-up production generated 39 to 354 μg of soluble protein per 10 mg of translation lysate. Compared to rare proteins where cell-based systems do produce functional proteins, the cell-free yields are comparable or better. All 13 test products were enzymatically active, without failure. This general path to produce functional malaria proteins should now allow the community to access new tools, such as biologically active protein arrays, and lead to the discovery of new chemical functions, structures, and inhibitors of previously inaccessible malaria gene products.

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Year:  2013        PMID: 24123271      PMCID: PMC3889570          DOI: 10.1128/EC.00222-13

Source DB:  PubMed          Journal:  Eukaryot Cell        ISSN: 1535-9786


  58 in total

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Authors:  Pradipsinh K Rathod; Karthikeyan Ganesan; Rhian E Hayward; Zbynek Bozdech; Joseph L DeRisi
Journal:  Trends Parasitol       Date:  2002-01

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Authors:  Chrislaine Withers-Martinez; José W Saldanha; Barry Ely; Fiona Hackett; Tony O'Connor; Michael J Blackman
Journal:  J Biol Chem       Date:  2002-06-06       Impact factor: 5.157

3.  Shotgun DNA microarrays and stage-specific gene expression in Plasmodium falciparum malaria.

Authors:  R E Hayward; J L Derisi; S Alfadhli; D C Kaslow; P O Brown; P K Rathod
Journal:  Mol Microbiol       Date:  2000-01       Impact factor: 3.501

4.  The crystal structure of human protein farnesyltransferase reveals the basis for inhibition by CaaX tetrapeptides and their mimetics.

Authors:  S B Long; P J Hancock; A M Kral; H W Hellinga; L S Beese
Journal:  Proc Natl Acad Sci U S A       Date:  2001-10-30       Impact factor: 11.205

5.  Gene organization of a Plasmodium falciparum serine hydroxymethyltransferase and its functional expression in Escherichia coli.

Authors:  S Alfadhli; P K Rathod
Journal:  Mol Biochem Parasitol       Date:  2000-10       Impact factor: 1.759

6.  Co-ordinated programme of gene expression during asexual intraerythrocytic development of the human malaria parasite Plasmodium falciparum revealed by microarray analysis.

Authors:  C Ben Mamoun; I Y Gluzman; C Hott; S K MacMillan; A S Amarakone; D L Anderson; J M Carlton; J B Dame; D Chakrabarti; R K Martin; B H Brownstein; D E Goldberg
Journal:  Mol Microbiol       Date:  2001-01       Impact factor: 3.501

7.  Divergent regulation of dihydrofolate reductase between malaria parasite and human host.

Authors:  Kai Zhang; Pradipsinh K Rathod
Journal:  Science       Date:  2002-04-19       Impact factor: 47.728

8.  Genome sequence of the human malaria parasite Plasmodium falciparum.

Authors:  Malcolm J Gardner; Neil Hall; Eula Fung; Owen White; Matthew Berriman; Richard W Hyman; Jane M Carlton; Arnab Pain; Karen E Nelson; Sharen Bowman; Ian T Paulsen; Keith James; Jonathan A Eisen; Kim Rutherford; Steven L Salzberg; Alister Craig; Sue Kyes; Man-Suen Chan; Vishvanath Nene; Shamira J Shallom; Bernard Suh; Jeremy Peterson; Sam Angiuoli; Mihaela Pertea; Jonathan Allen; Jeremy Selengut; Daniel Haft; Michael W Mather; Akhil B Vaidya; David M A Martin; Alan H Fairlamb; Martin J Fraunholz; David S Roos; Stuart A Ralph; Geoffrey I McFadden; Leda M Cummings; G Mani Subramanian; Chris Mungall; J Craig Venter; Daniel J Carucci; Stephen L Hoffman; Chris Newbold; Ronald W Davis; Claire M Fraser; Bart Barrell
Journal:  Nature       Date:  2002-10-03       Impact factor: 49.962

9.  Discovery of gene function by expression profiling of the malaria parasite life cycle.

Authors:  Karine G Le Roch; Yingyao Zhou; Peter L Blair; Muni Grainger; J Kathleen Moch; J David Haynes; Patricia De La Vega; Anthony A Holder; Serge Batalov; Daniel J Carucci; Elizabeth A Winzeler
Journal:  Science       Date:  2003-07-31       Impact factor: 47.728

10.  Asexual populations of the human malaria parasite, Plasmodium falciparum, use a two-step genomic strategy to acquire accurate, beneficial DNA amplifications.

Authors:  Jennifer L Guler; Daniel L Freeman; Vida Ahyong; Rapatbhorn Patrapuvich; John White; Ramesh Gujjar; Margaret A Phillips; Joseph DeRisi; Pradipsinh K Rathod
Journal:  PLoS Pathog       Date:  2013-05-23       Impact factor: 6.823

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  3 in total

1.  Topoisomerase II from Human Malaria Parasites: EXPRESSION, PURIFICATION, AND SELECTIVE INHIBITION.

Authors:  Devaraja G Mudeppa; Shiva Kumar; Sreekanth Kokkonda; John White; Pradipsinh K Rathod
Journal:  J Biol Chem       Date:  2015-06-08       Impact factor: 5.157

2.  Structure of Plasmodium falciparum orotate phosphoribosyltransferase with autologous inhibitory protein-protein interactions.

Authors:  Shiva Kumar; Kalyanaraman Krishnamoorthy; Devaraja G Mudeppa; Pradipsinh K Rathod
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-04-21       Impact factor: 1.056

3.  Protein structural biology using cell-free platform from wheat germ.

Authors:  Irina V Novikova; Noopur Sharma; Trevor Moser; Ryan Sontag; Yan Liu; Michael J Collazo; Duilio Cascio; Tolou Shokuhfar; Hanjo Hellmann; Michael Knoblauch; James E Evans
Journal:  Adv Struct Chem Imaging       Date:  2018-11-10
  3 in total

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