Literature DB >> 24120665

The translational landscape of the mammalian cell cycle.

Craig R Stumpf1, Melissa V Moreno, Adam B Olshen, Barry S Taylor, Davide Ruggero.   

Abstract

Gene regulation during cell-cycle progression is an intricately choreographed process, ensuring accurate DNA replication and division. However, the translational landscape of gene expression underlying cell-cycle progression remains largely unknown. Employing genome-wide ribosome profiling, we uncover widespread translational regulation of hundreds of mRNAs serving as an unexpected mechanism for gene regulation underlying cell-cycle progression. A striking example is the S phase translational regulation of RICTOR, which is associated with cell cycle-dependent activation of mammalian target of rapamycin complex 2 (mTORC2) signaling and accurate cell-cycle progression. We further identified unappreciated coordination in translational control of mRNAs within molecular complexes dedicated to cell-cycle progression, lipid metabolism, and genome integrity. This includes the majority of mRNAs comprising the cohesin and condensin complexes responsible for maintaining genome organization, which are coordinately translated during specific cell cycle phases via their 5' UTRs. Our findings illuminate the prevalence and dynamic nature of translational regulation underlying the mammalian cell cycle.
Copyright © 2013 Elsevier Inc. All rights reserved.

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Year:  2013        PMID: 24120665      PMCID: PMC3959127          DOI: 10.1016/j.molcel.2013.09.018

Source DB:  PubMed          Journal:  Mol Cell        ISSN: 1097-2765            Impact factor:   17.970


  28 in total

Review 1.  mTOR signaling in growth control and disease.

Authors:  Mathieu Laplante; David M Sabatini
Journal:  Cell       Date:  2012-04-13       Impact factor: 41.582

2.  DDX3 regulates cell growth through translational control of cyclin E1.

Authors:  Ming-Chih Lai; Wen-Cheng Chang; Sheau-Yann Shieh; Woan-Yuh Tarn
Journal:  Mol Cell Biol       Date:  2010-09-13       Impact factor: 4.272

Review 3.  Condensin and cohesin complexity: the expanding repertoire of functions.

Authors:  Andrew J Wood; Aaron F Severson; Barbara J Meyer
Journal:  Nat Rev Genet       Date:  2010-05-05       Impact factor: 53.242

4.  Human Wapl is a cohesin-binding protein that promotes sister-chromatid resolution in mitotic prophase.

Authors:  Rita Gandhi; Peter J Gillespie; Tatsuya Hirano
Journal:  Curr Biol       Date:  2006-11-16       Impact factor: 10.834

5.  Methods for synchronizing cells at specific stages of the cell cycle.

Authors:  J Jackman; P M O'Connor
Journal:  Curr Protoc Cell Biol       Date:  2001-05

6.  Cell-cycle regulator E2F1 and microRNA-223 comprise an autoregulatory negative feedback loop in acute myeloid leukemia.

Authors:  John A Pulikkan; Viola Dengler; Philomina S Peramangalam; Abdul A Peer Zada; Carsten Müller-Tidow; Stefan K Bohlander; Daniel G Tenen; Gerhard Behre
Journal:  Blood       Date:  2009-12-22       Impact factor: 22.113

7.  Systematic and quantitative assessment of the ubiquitin-modified proteome.

Authors:  Woong Kim; Eric J Bennett; Edward L Huttlin; Ailan Guo; Jing Li; Anthony Possemato; Mathew E Sowa; Ramin Rad; John Rush; Michael J Comb; J Wade Harper; Steven P Gygi
Journal:  Mol Cell       Date:  2011-09-08       Impact factor: 17.970

8.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

9.  The Vienna RNA websuite.

Authors:  Andreas R Gruber; Ronny Lorenz; Stephan H Bernhart; Richard Neuböck; Ivo L Hofacker
Journal:  Nucleic Acids Res       Date:  2008-04-19       Impact factor: 16.971

10.  The translational landscape of mTOR signalling steers cancer initiation and metastasis.

Authors:  Andrew C Hsieh; Yi Liu; Merritt P Edlind; Nicholas T Ingolia; Matthew R Janes; Annie Sher; Evan Y Shi; Craig R Stumpf; Carly Christensen; Michael J Bonham; Shunyou Wang; Pingda Ren; Michael Martin; Katti Jessen; Morris E Feldman; Jonathan S Weissman; Kevan M Shokat; Christian Rommel; Davide Ruggero
Journal:  Nature       Date:  2012-02-22       Impact factor: 69.504

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  107 in total

1.  Methodology for Ribosome Profiling of Key Stages of the Caulobacter crescentus Cell Cycle.

Authors:  James R Aretakis; Nadra Al-Husini; Jared M Schrader
Journal:  Methods Enzymol       Date:  2018-08-31       Impact factor: 1.600

Review 2.  Toward a Kinetic Understanding of Eukaryotic Translation.

Authors:  Masaaki Sokabe; Christopher S Fraser
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-02-01       Impact factor: 10.005

3.  SZB120 Exhibits Immunomodulatory Effects by Targeting eIF2α to Suppress Th17 Cell Differentiation.

Authors:  Linjiao Chen; Jing Bai; Danhong Peng; Yuanyuan Gao; Xiaojie Cai; Junxun Zhang; Sibei Tang; Liman Niu; Yang Sun; Fangzhou Lou; Hong Zhou; Qianqian Yin; Zhikai Wang; Libo Sun; Xuemei Du; Zhenyao Xu; Hong Wang; Qun Li; Honglin Wang
Journal:  J Immunol       Date:  2021-01-22       Impact factor: 5.422

4.  Estimation of ribosome profiling performance and reproducibility at various levels of resolution.

Authors:  Alon Diament; Tamir Tuller
Journal:  Biol Direct       Date:  2016-05-10       Impact factor: 4.540

5.  A novel role for the condensin II complex in cellular senescence.

Authors:  Yuhki Yokoyama; Hengrui Zhu; Rugang Zhang; Ken-ichi Noma
Journal:  Cell Cycle       Date:  2015       Impact factor: 4.534

Review 6.  Dynamics of protein synthesis and degradation through the cell cycle.

Authors:  Andrea Brigitta Alber; David Michael Suter
Journal:  Cell Cycle       Date:  2019-03-30       Impact factor: 4.534

7.  Mammalian cell growth dynamics in mitosis.

Authors:  Teemu P Miettinen; Joon Ho Kang; Lucy F Yang; Scott R Manalis
Journal:  Elife       Date:  2019-05-07       Impact factor: 8.140

8.  Lipid biosynthesis: When the cell cycle meets protein synthesis?

Authors:  Heidi M Blank; Nairita Maitra; Michael Polymenis
Journal:  Cell Cycle       Date:  2017-04-18       Impact factor: 4.534

9.  Dynamic translation regulation in Caulobacter cell cycle control.

Authors:  Jared M Schrader; Gene-Wei Li; W Seth Childers; Adam M Perez; Jonathan S Weissman; Lucy Shapiro; Harley H McAdams
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-17       Impact factor: 11.205

Review 10.  Ribosome Profiling: Global Views of Translation.

Authors:  Nicholas T Ingolia; Jeffrey A Hussmann; Jonathan S Weissman
Journal:  Cold Spring Harb Perspect Biol       Date:  2019-05-01       Impact factor: 10.005

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