Literature DB >> 24111311

Nanopore single-molecule dielectrophoretic detection of cancer-derived microRNA biomarkers.

Kai Tian, Li-Qun Gu.   

Abstract

The nanopore-based single-molecule biosensor has been extensively investigated for various biomedical detections. It has demonstrated the potential in gene sequencing and diagnosis-oriented biomarker detection such as microRNAs. In real-time detection, however, samples extracted from bio-fluids contain various non-target nucleic acids components. These components can cause severely influence the target detection accuracy. We have discovered that a polycationic probe can solve this issue. The polycationic peptide domain of the probe can separate the target probe complex from free nucleic acids, and only lead the complex into the pore, therefore realizing simultaneous enrichment and detection of target microRNAs. This study establishs a universal approach to detecting any short pathogenic nucleic acids fragment in complex samples.

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Year:  2013        PMID: 24111311      PMCID: PMC6201273          DOI: 10.1109/EMBC.2013.6611124

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  41 in total

1.  Rapid electronic detection of probe-specific microRNAs using thin nanopore sensors.

Authors:  Meni Wanunu; Tali Dadosh; Vishva Ray; Jingmin Jin; Larry McReynolds; Marija Drndić
Journal:  Nat Nanotechnol       Date:  2010-10-24       Impact factor: 39.213

2.  Single-molecule analysis of DNA-protein complexes using nanopores.

Authors:  Breton Hornblower; Amy Coombs; Richard D Whitaker; Anatoly Kolomeisky; Stephen J Picone; Amit Meller; Mark Akeson
Journal:  Nat Methods       Date:  2007-03-04       Impact factor: 28.547

Review 3.  Nanopore analytics: sensing of single molecules.

Authors:  Stefan Howorka; Zuzanna Siwy
Journal:  Chem Soc Rev       Date:  2009-06-15       Impact factor: 54.564

4.  Serum microRNA signatures identified in a genome-wide serum microRNA expression profiling predict survival of non-small-cell lung cancer.

Authors:  Zhibin Hu; Xi Chen; Yang Zhao; Tian Tian; Guangfu Jin; Yongqian Shu; Yijiang Chen; Lin Xu; Ke Zen; Chenyu Zhang; Hongbing Shen
Journal:  J Clin Oncol       Date:  2010-03-01       Impact factor: 44.544

5.  MicroRNA signatures in tissues and plasma predict development and prognosis of computed tomography detected lung cancer.

Authors:  Mattia Boeri; Carla Verri; Davide Conte; Luca Roz; Piergiorgio Modena; Federica Facchinetti; Elisa Calabrò; Carlo M Croce; Ugo Pastorino; Gabriella Sozzi
Journal:  Proc Natl Acad Sci U S A       Date:  2011-02-07       Impact factor: 11.205

6.  Electrostatic focusing of unlabelled DNA into nanoscale pores using a salt gradient.

Authors:  Meni Wanunu; Will Morrison; Yitzhak Rabin; Alexander Y Grosberg; Amit Meller
Journal:  Nat Nanotechnol       Date:  2009-12-20       Impact factor: 39.213

Review 7.  Direct detection and quantification of microRNAs.

Authors:  Eric A Hunt; Ann M Goulding; Sapna K Deo
Journal:  Anal Biochem       Date:  2009-01-19       Impact factor: 3.365

Review 8.  The potential and challenges of nanopore sequencing.

Authors:  Daniel Branton; David W Deamer; Andre Marziali; Hagan Bayley; Steven A Benner; Thomas Butler; Massimiliano Di Ventra; Slaven Garaj; Andrew Hibbs; Xiaohua Huang; Stevan B Jovanovich; Predrag S Krstic; Stuart Lindsay; Xinsheng Sean Ling; Carlos H Mastrangelo; Amit Meller; John S Oliver; Yuriy V Pershin; J Michael Ramsey; Robert Riehn; Gautam V Soni; Vincent Tabard-Cossa; Meni Wanunu; Matthew Wiggin; Jeffery A Schloss
Journal:  Nat Biotechnol       Date:  2008-10       Impact factor: 54.908

Review 9.  An introduction to peptide nucleic acid.

Authors:  P E Nielsen; M Egholm
Journal:  Curr Issues Mol Biol       Date:  1999       Impact factor: 2.081

10.  Nanopore-based detection of circulating microRNAs in lung cancer patients.

Authors:  Yong Wang; Dali Zheng; Qiulin Tan; Michael X Wang; Li-Qun Gu
Journal:  Nat Nanotechnol       Date:  2011-09-04       Impact factor: 39.213

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  1 in total

1.  Probing molecular pathways for DNA orientational trapping, unzipping and translocation in nanopores by using a tunable overhang sensor.

Authors:  Yong Wang; Kai Tian; Lehr L Hunter; Brandon Ritzo; Li-Qun Gu
Journal:  Nanoscale       Date:  2014-10-07       Impact factor: 7.790

  1 in total

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