Literature DB >> 24110601

Emphysema classification based on embedded probabilistic PCA.

Teresa Zulueta-Coarasa, Sila Kurugol, James C Ross, George G Washko, Raúl San José Estépar.   

Abstract

In this article we investigate the suitability of a manifold learning technique to classify different types of emphysema based on embedded Probabilistic PCA (PPCA). Our approach finds the most discriminant linear space for each emphysema pattern against the remaining patterns where lung CT image patches can be embedded. In this embedded space, we train a PPCA model for each pattern. The main novelty of our technique is that it is possible to compute the class membership posterior probability for each emphysema pattern rather than a hard assignment as it is typically done by other approaches. We tested our algorithm with six emphysema patterns using a data set of 1337 CT training patches. Using a 10-fold cross validation experiment, an average recall rate of 69% is achieved when the posterior probability is greater than 75%. A quantitative comparison with a texture-based approach based on Local Binary Patterns and with an approach based on local intensity distributions shows that our method is competitive. The analysis of full lungs using our approach shows a good visual agreement with the underlying emphysema types and a smooth spatial relation.

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Year:  2013        PMID: 24110601      PMCID: PMC3918501          DOI: 10.1109/EMBC.2013.6610414

Source DB:  PubMed          Journal:  Conf Proc IEEE Eng Med Biol Soc        ISSN: 1557-170X


  9 in total

1.  Computer-aided diagnosis in high resolution CT of the lungs.

Authors:  Ingrid C Sluimer; Paul F van Waes; Max A Viergever; Bram van Ginneken
Journal:  Med Phys       Date:  2003-12       Impact factor: 4.071

2.  Mixtures of probabilistic principal component analyzers.

Authors:  M E Tipping; C M Bishop
Journal:  Neural Comput       Date:  1999-02-15       Impact factor: 2.026

3.  Multiscale lung texture signature learning using the Riesz transform.

Authors:  Adrien Depeursinge; Antonio Foncubierta-Rodriguez; Dimitri Van de Ville; Henning Müller
Journal:  Med Image Comput Comput Assist Interv       Date:  2012

4.  EMPHYSEMA QUANTIFICATION IN A MULTI-SCANNER HRCT COHORT USING LOCAL INTENSITY DISTRIBUTIONS.

Authors:  C S Mendoza; G R Washko; J C Ross; A A Diaz; D A Lynch; J D Crapo; E K Silverman; B Acha; C Serrano; R San José Estépar
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2012

5.  Quantitative analysis of pulmonary emphysema using local binary patterns.

Authors:  Lauge Sørensen; Saher B Shaker; Marleen de Bruijne
Journal:  IEEE Trans Med Imaging       Date:  2010-02       Impact factor: 10.048

Review 6.  Emphysema: definition, imaging, and quantification.

Authors:  W M Thurlbeck; N L Müller
Journal:  AJR Am J Roentgenol       Date:  1994-11       Impact factor: 3.959

7.  "Density mask". An objective method to quantitate emphysema using computed tomography.

Authors:  N L Müller; C A Staples; R R Miller; R T Abboud
Journal:  Chest       Date:  1988-10       Impact factor: 9.410

Review 8.  New paradigms in the pathogenesis of chronic obstructive pulmonary disease I.

Authors:  William MacNee; Rubin M Tuder
Journal:  Proc Am Thorac Soc       Date:  2009-09-15

9.  Bias in error estimation when using cross-validation for model selection.

Authors:  Sudhir Varma; Richard Simon
Journal:  BMC Bioinformatics       Date:  2006-02-23       Impact factor: 3.169

  9 in total
  2 in total

1.  RANKING AND CLASSIFICATION OF MONOTONIC EMPHYSEMA PATTERNS WITH A MULTI-CLASS HIERARCHICAL APPROACH.

Authors:  Sila Kurugol; George R Washko; Raul San Jose Estepar
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2014-04

2.  Extended Gabor approach applied to classification of emphysematous patterns in computed tomography.

Authors:  Rodrigo Nava; Boris Escalante-Ramírez; Gabriel Cristóbal; Raúl San José Estépar
Journal:  Med Biol Eng Comput       Date:  2014-02-05       Impact factor: 2.602

  2 in total

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