Literature DB >> 24109372

1-(4-Meth-oxy-phen-yl)-2-[4-(tri-fluoro-meth-yl)phen-yl]-1H-phenanthro[9,10-d]imidazole.

T Mohandas1, R Sathishkumar, J Jayabharathi, A Pasupathi, P Sakthivel.   

Abstract

In the title compound, C29H19F3N2O, a phenanthroline-fused imidazole tetra-cyclic system, the fused benzene rings deviate slightly from the central ring and make dihedral angles with this ring of 3.47 (8) and 3.05 (8)°. The tri-fluoro-methyl-phenyl ring is roughly coplanar with the phenanthroline-fused imidazole tetra-cyclic system [dihedral angle = 11.02 (6)°], while the meth-oxy-phenyl ring is almost perpendicular [dihedral angle = 87.65 (6)°]. There are intra-molecular C-H ⋯π inter-actions involving the meth-oxy-phenyl ring and the central phenanthroline ring, as well as an inter-molecular C-H⋯π inter-action involving the phenanthroline ring. In addition, there is an inter-molecular π-π inter-action involving the central phenanthroline ring and the tri-fluoro-methyl-phenyl ring [centroid-centroid distance = 3.685 (2) Å], as well as C-H⋯N inter-actions linking the mol-ecules into dimers.

Entities:  

Year:  2013        PMID: 24109372      PMCID: PMC3793785          DOI: 10.1107/S1600536813019351

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the supra­molecular architecture of phenanthroline compounds, see: Lehn (1995 ▶). For metal sensors, see: Walters et al. (2000 ▶). For mol­ecular electronics, see: Peng et al. (1997 ▶). For photo sensitizers see: Hara et al. (2001 ▶). For a related structure, see: Sathishkumar et al. (2013 ▶). .

Experimental

Crystal data

C29H19F3N2O M = 468.46 Monoclinic, a = 11.7063 (9) Å b = 20.2301 (16) Å c = 9.5419 (8) Å β = 99.725 (2)° V = 2227.2 (3) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 173 K 0.32 × 0.29 × 0.25 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.956, T max = 0.999 24449 measured reflections 5128 independent reflections 3511 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.124 S = 1.01 5128 reflections 317 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.24 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: APEX2 and SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813019351/bv2223sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813019351/bv2223Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C29H19F3N2OF(000) = 968
Mr = 468.46Dx = 1.397 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5131 reflections
a = 11.7063 (9) Åθ = 1.8–27.6°
b = 20.2301 (16) ŵ = 0.10 mm1
c = 9.5419 (8) ÅT = 173 K
β = 99.725 (2)°Block, colourless
V = 2227.2 (3) Å30.32 × 0.29 × 0.25 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer5128 independent reflections
Radiation source: fine-focus sealed tube3511 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.032
Ω and φ scanθmax = 27.6°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −15→14
Tmin = 0.956, Tmax = 0.999k = 0→26
24449 measured reflectionsl = 0→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0514P)2 + 0.6328P] where P = (Fo2 + 2Fc2)/3
5128 reflections(Δ/σ)max < 0.001
317 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.24 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.94082 (11)−0.18352 (6)0.83630 (17)0.0945 (5)
F21.03787 (11)−0.09609 (7)0.88946 (19)0.1026 (5)
F30.97313 (14)−0.11886 (9)0.67561 (17)0.1112 (6)
O10.24682 (11)−0.21387 (6)0.47694 (14)0.0615 (4)
N10.41440 (11)0.01373 (6)0.76779 (13)0.0381 (3)
N20.53956 (11)0.08671 (6)0.88301 (14)0.0414 (3)
C10.34962 (13)0.06745 (7)0.80056 (16)0.0375 (3)
C20.22709 (13)0.08118 (8)0.77095 (16)0.0404 (4)
C30.14290 (15)0.04019 (9)0.69130 (19)0.0516 (4)
H30.1656−0.00090.65650.062*
C40.02892 (16)0.05872 (11)0.6633 (2)0.0625 (5)
H4−0.02680.03060.60920.075*
C5−0.00549 (16)0.11848 (11)0.7138 (2)0.0674 (6)
H5−0.08460.13130.69380.081*
C60.07410 (16)0.15882 (10)0.7921 (2)0.0591 (5)
H60.04890.19950.82600.071*
C70.19225 (14)0.14223 (8)0.82452 (17)0.0439 (4)
C80.27615 (14)0.18711 (8)0.90664 (17)0.0435 (4)
C90.24350 (17)0.24581 (9)0.96904 (19)0.0546 (4)
H90.16370.25710.95800.066*
C100.32367 (19)0.28690 (9)1.0449 (2)0.0626 (5)
H100.29890.32601.08610.075*
C110.44104 (19)0.27210 (9)1.0624 (2)0.0621 (5)
H110.49640.30111.11460.075*
C120.47650 (16)0.21546 (8)1.00403 (18)0.0519 (4)
H120.55680.20531.01550.062*
C130.39540 (14)0.17238 (7)0.92748 (16)0.0410 (4)
C140.42898 (13)0.11102 (7)0.87125 (16)0.0387 (3)
C150.52887 (13)0.02806 (7)0.82138 (16)0.0380 (3)
C160.63143 (13)−0.01355 (7)0.81555 (16)0.0388 (3)
C170.62932 (15)−0.07882 (8)0.76912 (19)0.0505 (4)
H170.5571−0.10000.73790.061*
C180.73102 (16)−0.11314 (9)0.7679 (2)0.0543 (4)
H180.7280−0.15770.73600.065*
C190.83675 (14)−0.08351 (8)0.81246 (18)0.0467 (4)
C200.84057 (15)−0.01934 (9)0.8612 (2)0.0533 (4)
H200.91310.00130.89380.064*
C210.73894 (15)0.01501 (8)0.86267 (19)0.0494 (4)
H210.74260.05920.89670.059*
C220.94602 (17)−0.11998 (10)0.8042 (2)0.0606 (5)
C230.36937 (13)−0.04529 (7)0.69415 (16)0.0374 (3)
C240.36221 (14)−0.04960 (8)0.54819 (17)0.0434 (4)
H240.3855−0.01350.49600.052*
C250.32095 (15)−0.10681 (8)0.47918 (18)0.0482 (4)
H250.3165−0.11020.37910.058*
C260.28607 (13)−0.15923 (8)0.55452 (18)0.0450 (4)
C270.29213 (15)−0.15426 (8)0.70017 (19)0.0502 (4)
H270.2676−0.19010.75230.060*
C280.33403 (15)−0.09708 (8)0.76958 (18)0.0460 (4)
H280.3384−0.09360.86960.055*
C290.2023 (2)−0.26684 (12)0.5502 (3)0.0963 (9)
H29A0.1761−0.30250.48300.144*
H29B0.1369−0.25100.59290.144*
H29C0.2633−0.28340.62510.144*
U11U22U33U12U13U23
F10.0725 (8)0.0575 (8)0.1538 (14)0.0215 (6)0.0206 (9)0.0119 (8)
F20.0504 (7)0.0934 (10)0.1529 (14)0.0193 (7)−0.0148 (8)−0.0329 (9)
F30.0985 (11)0.1497 (14)0.0970 (11)0.0515 (10)0.0497 (9)0.0126 (10)
O10.0598 (8)0.0564 (8)0.0657 (8)−0.0134 (6)0.0028 (6)−0.0200 (6)
N10.0384 (7)0.0357 (6)0.0391 (7)−0.0013 (5)0.0033 (5)−0.0015 (5)
N20.0398 (7)0.0414 (7)0.0417 (7)−0.0010 (6)0.0033 (6)−0.0023 (6)
C10.0414 (8)0.0365 (8)0.0347 (8)−0.0008 (6)0.0067 (6)0.0039 (6)
C20.0397 (8)0.0431 (8)0.0383 (8)−0.0010 (7)0.0062 (6)0.0059 (7)
C30.0422 (9)0.0547 (10)0.0570 (11)−0.0020 (8)0.0058 (8)−0.0037 (8)
C40.0418 (10)0.0735 (13)0.0690 (13)−0.0058 (9)0.0002 (9)−0.0066 (10)
C50.0391 (10)0.0775 (14)0.0831 (15)0.0087 (10)0.0035 (9)0.0001 (12)
C60.0470 (10)0.0600 (11)0.0709 (13)0.0087 (9)0.0118 (9)−0.0003 (10)
C70.0431 (9)0.0467 (9)0.0432 (9)0.0031 (7)0.0112 (7)0.0065 (7)
C80.0504 (9)0.0427 (8)0.0392 (8)0.0019 (7)0.0127 (7)0.0045 (7)
C90.0592 (11)0.0505 (10)0.0568 (11)0.0083 (9)0.0175 (9)−0.0018 (8)
C100.0811 (14)0.0501 (10)0.0589 (12)0.0058 (10)0.0186 (10)−0.0136 (9)
C110.0718 (13)0.0532 (11)0.0610 (12)−0.0081 (10)0.0102 (10)−0.0159 (9)
C120.0549 (10)0.0471 (9)0.0536 (10)−0.0038 (8)0.0083 (8)−0.0082 (8)
C130.0482 (9)0.0392 (8)0.0363 (8)−0.0009 (7)0.0086 (7)0.0016 (6)
C140.0402 (8)0.0379 (8)0.0375 (8)−0.0014 (7)0.0054 (6)0.0020 (6)
C150.0391 (8)0.0395 (8)0.0344 (8)−0.0031 (7)0.0033 (6)0.0014 (6)
C160.0412 (8)0.0412 (8)0.0339 (8)0.0003 (7)0.0059 (6)0.0029 (6)
C170.0427 (9)0.0438 (9)0.0625 (11)−0.0007 (7)0.0018 (8)−0.0029 (8)
C180.0524 (10)0.0424 (9)0.0665 (12)0.0042 (8)0.0053 (9)−0.0037 (8)
C190.0447 (9)0.0482 (9)0.0470 (9)0.0067 (8)0.0073 (7)0.0049 (7)
C200.0404 (9)0.0550 (10)0.0629 (11)0.0003 (8)0.0040 (8)−0.0046 (9)
C210.0458 (9)0.0446 (9)0.0562 (10)−0.0001 (8)0.0041 (8)−0.0088 (8)
C220.0517 (11)0.0564 (11)0.0738 (14)0.0082 (9)0.0105 (10)−0.0025 (10)
C230.0356 (8)0.0366 (8)0.0385 (8)−0.0016 (6)0.0023 (6)−0.0017 (6)
C240.0452 (9)0.0450 (9)0.0388 (9)−0.0016 (7)0.0043 (7)0.0057 (7)
C250.0504 (10)0.0563 (10)0.0355 (9)0.0002 (8)0.0003 (7)−0.0043 (7)
C260.0357 (8)0.0465 (9)0.0503 (10)−0.0025 (7)0.0002 (7)−0.0086 (7)
C270.0546 (10)0.0447 (9)0.0513 (10)−0.0127 (8)0.0091 (8)0.0011 (8)
C280.0541 (10)0.0470 (9)0.0370 (8)−0.0083 (8)0.0081 (7)−0.0012 (7)
C290.108 (2)0.0749 (15)0.112 (2)−0.0536 (15)0.0387 (16)−0.0358 (14)
F1—C221.325 (2)C11—H110.9500
F2—C221.325 (2)C12—C131.400 (2)
F3—C221.319 (2)C12—H120.9500
O1—C261.3661 (19)C13—C141.433 (2)
O1—C291.425 (3)C15—C161.475 (2)
N1—C151.3819 (19)C16—C211.389 (2)
N1—C11.3907 (19)C16—C171.392 (2)
N1—C231.4395 (19)C17—C181.380 (2)
N2—C151.3209 (19)C17—H170.9500
N2—C141.371 (2)C18—C191.376 (2)
C1—C141.372 (2)C18—H180.9500
C1—C21.441 (2)C19—C201.377 (2)
C2—C31.408 (2)C19—C221.490 (2)
C2—C71.423 (2)C20—C211.380 (2)
C3—C41.368 (2)C20—H200.9500
C3—H30.9500C21—H210.9500
C4—C51.386 (3)C23—C281.374 (2)
C4—H40.9500C23—C241.384 (2)
C5—C61.363 (3)C24—C251.378 (2)
C5—H50.9500C24—H240.9500
C6—C71.406 (2)C25—C261.381 (2)
C6—H60.9500C25—H250.9500
C7—C81.464 (2)C26—C271.383 (2)
C8—C131.408 (2)C27—C281.381 (2)
C8—C91.410 (2)C27—H270.9500
C9—C101.366 (3)C28—H280.9500
C9—H90.9500C29—H29A0.9800
C10—C111.388 (3)C29—H29B0.9800
C10—H100.9500C29—H29C0.9800
C11—C121.369 (2)
C26—O1—C29117.39 (15)N1—C15—C16127.66 (13)
C15—N1—C1106.52 (12)C21—C16—C17117.66 (15)
C15—N1—C23127.36 (12)C21—C16—C15116.69 (14)
C1—N1—C23126.12 (13)C17—C16—C15125.64 (14)
C15—N2—C14105.58 (13)C18—C17—C16120.74 (16)
C14—C1—N1105.24 (13)C18—C17—H17119.6
C14—C1—C2122.77 (14)C16—C17—H17119.6
N1—C1—C2131.98 (14)C19—C18—C17120.69 (16)
C3—C2—C7119.22 (15)C19—C18—H18119.7
C3—C2—C1125.09 (15)C17—C18—H18119.7
C7—C2—C1115.66 (14)C18—C19—C20119.41 (16)
C4—C3—C2120.96 (17)C18—C19—C22120.21 (16)
C4—C3—H3119.5C20—C19—C22120.36 (16)
C2—C3—H3119.5C19—C20—C21119.95 (16)
C3—C4—C5120.16 (18)C19—C20—H20120.0
C3—C4—H4119.9C21—C20—H20120.0
C5—C4—H4119.9C20—C21—C16121.52 (16)
C6—C5—C4120.07 (18)C20—C21—H21119.2
C6—C5—H5120.0C16—C21—H21119.2
C4—C5—H5120.0F3—C22—F2105.49 (18)
C5—C6—C7122.25 (18)F3—C22—F1105.03 (17)
C5—C6—H6118.9F2—C22—F1106.03 (17)
C7—C6—H6118.9F3—C22—C19112.60 (17)
C6—C7—C2117.35 (16)F2—C22—C19113.69 (17)
C6—C7—C8121.05 (16)F1—C22—C19113.25 (16)
C2—C7—C8121.58 (14)C28—C23—C24120.45 (14)
C13—C8—C9116.85 (16)C28—C23—N1119.65 (13)
C13—C8—C7120.25 (14)C24—C23—N1119.91 (13)
C9—C8—C7122.90 (16)C25—C24—C23119.38 (15)
C10—C9—C8121.69 (18)C25—C24—H24120.3
C10—C9—H9119.2C23—C24—H24120.3
C8—C9—H9119.2C24—C25—C26120.45 (15)
C9—C10—C11120.66 (17)C24—C25—H25119.8
C9—C10—H10119.7C26—C25—H25119.8
C11—C10—H10119.7O1—C26—C25116.18 (15)
C12—C11—C10119.56 (18)O1—C26—C27123.97 (16)
C12—C11—H11120.2C25—C26—C27119.85 (15)
C10—C11—H11120.2C28—C27—C26119.76 (15)
C11—C12—C13120.53 (18)C28—C27—H27120.1
C11—C12—H12119.7C26—C27—H27120.1
C13—C12—H12119.7C23—C28—C27120.10 (15)
C12—C13—C8120.70 (15)C23—C28—H28120.0
C12—C13—C14121.98 (15)C27—C28—H28120.0
C8—C13—C14117.29 (14)O1—C29—H29A109.5
N2—C14—C1111.17 (13)O1—C29—H29B109.5
N2—C14—C13126.49 (14)H29A—C29—H29B109.5
C1—C14—C13122.31 (14)O1—C29—H29C109.5
N2—C15—N1111.48 (13)H29A—C29—H29C109.5
N2—C15—C16120.86 (13)H29B—C29—H29C109.5
C15—N1—C1—C140.30 (16)C8—C13—C14—C1−0.5 (2)
C23—N1—C1—C14179.48 (13)C14—N2—C15—N10.87 (17)
C15—N1—C1—C2179.13 (15)C14—N2—C15—C16−179.16 (13)
C23—N1—C1—C2−1.7 (2)C1—N1—C15—N2−0.75 (16)
C14—C1—C2—C3175.80 (16)C23—N1—C15—N2−179.92 (13)
N1—C1—C2—C3−2.9 (3)C1—N1—C15—C16179.28 (14)
C14—C1—C2—C7−2.3 (2)C23—N1—C15—C160.1 (2)
N1—C1—C2—C7179.08 (15)N2—C15—C16—C21−7.2 (2)
C7—C2—C3—C40.9 (3)N1—C15—C16—C21172.77 (15)
C1—C2—C3—C4−177.09 (17)N2—C15—C16—C17171.79 (15)
C2—C3—C4—C5−0.2 (3)N1—C15—C16—C17−8.2 (3)
C3—C4—C5—C6−0.4 (3)C21—C16—C17—C18−1.2 (3)
C4—C5—C6—C70.2 (3)C15—C16—C17—C18179.86 (16)
C5—C6—C7—C20.6 (3)C16—C17—C18—C19−0.1 (3)
C5—C6—C7—C8178.84 (18)C17—C18—C19—C201.2 (3)
C3—C2—C7—C6−1.1 (2)C17—C18—C19—C22−177.10 (18)
C1—C2—C7—C6177.11 (15)C18—C19—C20—C21−1.1 (3)
C3—C2—C7—C8−179.34 (15)C22—C19—C20—C21177.20 (17)
C1—C2—C7—C8−1.2 (2)C19—C20—C21—C16−0.1 (3)
C6—C7—C8—C13−174.43 (15)C17—C16—C21—C201.3 (3)
C2—C7—C8—C133.8 (2)C15—C16—C21—C20−179.66 (16)
C6—C7—C8—C96.1 (2)C18—C19—C22—F380.8 (2)
C2—C7—C8—C9−175.70 (15)C20—C19—C22—F3−97.5 (2)
C13—C8—C9—C100.7 (3)C18—C19—C22—F2−159.34 (18)
C7—C8—C9—C10−179.85 (17)C20—C19—C22—F222.4 (3)
C8—C9—C10—C110.3 (3)C18—C19—C22—F1−38.2 (3)
C9—C10—C11—C12−0.6 (3)C20—C19—C22—F1143.46 (19)
C10—C11—C12—C13−0.2 (3)C15—N1—C23—C2892.07 (19)
C11—C12—C13—C81.3 (3)C1—N1—C23—C28−86.95 (19)
C11—C12—C13—C14−176.70 (16)C15—N1—C23—C24−87.77 (19)
C9—C8—C13—C12−1.5 (2)C1—N1—C23—C2493.20 (18)
C7—C8—C13—C12179.04 (15)C28—C23—C24—C25−1.0 (2)
C9—C8—C13—C14176.61 (14)N1—C23—C24—C25178.82 (14)
C7—C8—C13—C14−2.9 (2)C23—C24—C25—C260.5 (3)
C15—N2—C14—C1−0.67 (17)C29—O1—C26—C25−175.49 (19)
C15—N2—C14—C13177.31 (14)C29—O1—C26—C274.5 (3)
N1—C1—C14—N20.23 (17)C24—C25—C26—O1−179.80 (15)
C2—C1—C14—N2−178.74 (13)C24—C25—C26—C270.2 (3)
N1—C1—C14—C13−177.86 (13)O1—C26—C27—C28179.47 (16)
C2—C1—C14—C133.2 (2)C25—C26—C27—C28−0.6 (3)
C12—C13—C14—N2−0.2 (2)C24—C23—C28—C270.7 (2)
C8—C13—C14—N2−178.24 (15)N1—C23—C28—C27−179.15 (15)
C12—C13—C14—C1177.59 (15)C26—C27—C28—C230.1 (3)
D—H···AD—HH···AD···AD—H···A
C28—H28···N2i0.952.553.402 (2)150
C3—H3···Cg10.952.863.719 (2)154
C10—H10···Cg2ii0.952.693.419 (2)136
C17—H17···Cg10.952.743.6042 (2)154
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg are the centroids of the methoxyphenyl and phenthroline rings, repsectively.

D—H⋯A D—HH⋯A DA D—H⋯A
C28—H28⋯N2i 0.952.553.402 (2)150
C3—H3⋯Cg10.952.863.719 (2)154
C10—H10⋯Cg2ii 0.952.693.419 (2)136
C17—H17⋯Cg10.952.743.6042 (2)154

Symmetry codes: (i) ; (ii) .

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