Literature DB >> 23476556

1-(3,5-Dimethyl-phen-yl)-2-(4-fluoro-phen-yl)-1H-phenanthro[9,10-d]imidazole.

R Sathishkumar1, T Mohandas, P Sakthivel, J Jayabharathi.   

Abstract

In the title compound, C29H21FN2, the phenanthro tricyclic ring system is essentially planar with a maximum deviation of 0.030 (2) Å and makes dihedral angles between of 77.96 (6) and 37.18 (7)° with the dimethyl-phenyl and fluoro-phenyl rings, respectively. The crystal packing features weak C-H⋯π inter-actions involving the dimethyl-phenyl and other phenyl rings.

Entities:  

Year:  2013        PMID: 23476556      PMCID: PMC3588452          DOI: 10.1107/S1600536813003486

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of phenanthroline derivatives in the construction of mol­ecular devices, see: Yamada et al. (1992 ▶). For the biological activity of imidazole, see: Nebert & Gonzalez (1987 ▶). For related metallo-supra­molecular chemistry, see: Lehn (1996 ▶). For applications of complexes based on phenanthroline, see: Walters et al. (2000 ▶); Peng et al. (1997 ▶); Hara et al. (2001 ▶).

Experimental

Crystal data

C29H21FN2 M = 416.48 Monoclinic, a = 8.5680 (2) Å b = 10.6070 (3) Å c = 23.6900 (6) Å β = 93.899 (1)° V = 2147.98 (10) Å3 Z = 4 Mo Kα radiation μ = 0.08 mm−1 T = 295 K 0.30 × 0.20 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.952, T max = 0.995 19934 measured reflections 3777 independent reflections 2957 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.109 S = 1.02 3777 reflections 292 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.15 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: APEX2 and SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶); software used to prepare material for publication: PLATON (Spek, 2009 ▶). Click here for additional data file. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813003486/rk2393sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813003486/rk2393Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C29H21FN2F(000) = 872
Mr = 416.48Dx = 1.288 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6884 reflections
a = 8.5680 (2) Åθ = 2.6–25.8°
b = 10.6070 (3) ŵ = 0.08 mm1
c = 23.6900 (6) ÅT = 295 K
β = 93.899 (1)°Block, colourless
V = 2147.98 (10) Å30.30 × 0.20 × 0.20 mm
Z = 4
Bruker Kappa APEXII CCD diffractometer3777 independent reflections
Radiation source: fine-focus sealed tube2957 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.034
ω– and φ–scansθmax = 25.0°, θmin = 2.1°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −10→10
Tmin = 0.952, Tmax = 0.995k = −12→12
19934 measured reflectionsl = −28→28
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H-atom parameters constrained
wR(F2) = 0.109w = 1/[σ2(Fo2) + (0.047P)2 + 0.6584P] where P = (Fo2 + 2Fc2)/3
S = 1.02(Δ/σ)max = 0.001
3777 reflectionsΔρmax = 0.24 e Å3
292 parametersΔρmin = −0.15 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0229 (14)
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
F1−0.12516 (16)−0.11339 (12)0.46971 (5)0.0814 (5)
N1−0.17180 (15)0.00029 (12)0.20526 (5)0.0432 (4)
N2−0.01474 (14)0.16068 (12)0.23196 (5)0.0397 (4)
C10.13686 (19)0.43494 (15)0.31531 (7)0.0426 (5)
C20.03897 (18)0.35869 (15)0.28130 (7)0.0417 (5)
C30.08624 (17)0.23859 (14)0.26818 (6)0.0384 (5)
C40.22859 (18)0.19160 (15)0.28854 (7)0.0428 (5)
C50.32914 (18)0.26633 (16)0.32246 (7)0.0482 (6)
C60.2809 (2)0.38706 (16)0.33513 (7)0.0486 (6)
C7−0.03496 (17)0.16561 (14)0.17341 (6)0.0385 (5)
C80.02988 (18)0.24785 (15)0.13278 (7)0.0424 (5)
C90.1372 (2)0.34535 (16)0.14610 (8)0.0520 (6)
C100.1931 (2)0.41945 (19)0.10496 (9)0.0624 (7)
C110.1435 (3)0.3995 (2)0.04904 (9)0.0740 (8)
C120.0414 (3)0.3043 (2)0.03479 (8)0.0692 (8)
C13−0.0186 (2)0.22404 (17)0.07527 (7)0.0504 (6)
C14−0.1241 (2)0.12002 (17)0.05928 (7)0.0505 (6)
C15−0.1728 (3)0.0935 (2)0.00278 (8)0.0742 (8)
C16−0.2694 (3)−0.0054 (3)−0.01118 (9)0.0833 (9)
C17−0.3242 (3)−0.0829 (2)0.02974 (9)0.0705 (8)
C18−0.2803 (2)−0.06043 (17)0.08542 (8)0.0537 (6)
C19−0.18058 (18)0.04040 (16)0.10068 (7)0.0442 (5)
C20−0.13220 (17)0.06682 (14)0.15854 (6)0.0395 (5)
C21−0.09957 (18)0.05819 (14)0.24857 (7)0.0401 (5)
C22−0.10644 (18)0.01699 (15)0.30742 (7)0.0412 (5)
C23−0.1144 (2)−0.11111 (16)0.31864 (7)0.0507 (6)
C24−0.1214 (2)−0.15484 (17)0.37296 (8)0.0551 (6)
C25−0.1211 (2)−0.07015 (18)0.41601 (7)0.0542 (6)
C26−0.1164 (3)0.05626 (19)0.40719 (8)0.0627 (7)
C27−0.1093 (2)0.09943 (17)0.35261 (8)0.0547 (6)
C280.4870 (2)0.2170 (2)0.34406 (10)0.0739 (8)
C290.0858 (2)0.56524 (16)0.33040 (8)0.0557 (6)
H2−0.058290.388340.267360.0501*
H40.257410.109850.279590.0514*
H60.347640.437960.357780.0584*
H90.170760.359640.183720.0624*
H100.264400.483270.114570.0749*
H110.179750.451040.021020.0888*
H120.010260.29201−0.003180.0830*
H15−0.138310.14452−0.025780.0890*
H16−0.29900−0.02076−0.049060.0999*
H17−0.39033−0.149890.019600.0846*
H18−0.31691−0.112320.113280.0644*
H23−0.11507−0.168320.288880.0608*
H24−0.12626−0.240890.380170.0661*
H26−0.117850.112370.437310.0753*
H27−0.106360.185780.345980.0656*
H28A0.499530.227710.384350.1108*
H28B0.494600.129140.334950.1108*
H28C0.567590.262830.326620.1108*
H29A0.024930.561220.362910.0836*
H29B0.176190.617120.338820.0836*
H29C0.023570.600760.299110.0836*
U11U22U33U12U13U23
F10.1151 (10)0.0821 (9)0.0484 (7)−0.0124 (7)0.0160 (6)0.0106 (6)
N10.0415 (7)0.0419 (8)0.0456 (8)−0.0017 (6)−0.0016 (6)−0.0019 (6)
N20.0403 (7)0.0382 (7)0.0399 (7)−0.0021 (6)−0.0023 (6)−0.0012 (6)
C10.0456 (9)0.0402 (9)0.0425 (9)−0.0079 (7)0.0076 (7)0.0003 (7)
C20.0367 (8)0.0415 (9)0.0468 (9)−0.0007 (7)0.0021 (7)0.0017 (7)
C30.0359 (8)0.0394 (9)0.0396 (8)−0.0042 (7)0.0011 (6)0.0001 (7)
C40.0408 (9)0.0404 (9)0.0474 (9)0.0003 (7)0.0042 (7)0.0017 (7)
C50.0386 (9)0.0512 (10)0.0539 (10)−0.0057 (8)−0.0027 (8)0.0066 (8)
C60.0463 (9)0.0503 (10)0.0486 (10)−0.0156 (8)−0.0018 (8)−0.0014 (8)
C70.0358 (8)0.0382 (9)0.0412 (9)0.0061 (7)−0.0005 (7)−0.0004 (7)
C80.0387 (8)0.0423 (9)0.0464 (9)0.0077 (7)0.0049 (7)0.0021 (7)
C90.0512 (10)0.0495 (10)0.0559 (11)−0.0006 (8)0.0079 (8)0.0031 (8)
C100.0623 (12)0.0551 (12)0.0715 (14)−0.0063 (9)0.0171 (10)0.0046 (10)
C110.0864 (16)0.0722 (14)0.0662 (14)−0.0087 (12)0.0262 (12)0.0136 (11)
C120.0818 (14)0.0790 (14)0.0478 (11)−0.0010 (12)0.0121 (10)0.0069 (10)
C130.0497 (10)0.0559 (11)0.0463 (10)0.0089 (8)0.0084 (8)0.0036 (8)
C140.0500 (10)0.0582 (11)0.0430 (9)0.0104 (8)0.0017 (8)−0.0030 (8)
C150.0824 (15)0.0948 (17)0.0446 (11)−0.0068 (13)−0.0011 (10)−0.0024 (11)
C160.0932 (17)0.1064 (19)0.0476 (12)−0.0068 (15)−0.0140 (11)−0.0170 (12)
C170.0713 (13)0.0731 (14)0.0644 (13)−0.0016 (11)−0.0145 (11)−0.0180 (11)
C180.0517 (10)0.0528 (11)0.0547 (11)0.0040 (8)−0.0091 (8)−0.0088 (8)
C190.0400 (9)0.0462 (9)0.0456 (9)0.0095 (7)−0.0025 (7)−0.0069 (8)
C200.0357 (8)0.0397 (9)0.0426 (9)0.0051 (7)−0.0012 (7)−0.0015 (7)
C210.0368 (8)0.0377 (9)0.0454 (9)−0.0010 (7)0.0000 (7)−0.0011 (7)
C220.0364 (8)0.0428 (9)0.0443 (9)−0.0022 (7)0.0023 (7)−0.0006 (7)
C230.0621 (11)0.0431 (10)0.0467 (10)−0.0068 (8)0.0022 (8)−0.0040 (8)
C240.0676 (12)0.0421 (10)0.0558 (11)−0.0066 (9)0.0059 (9)0.0051 (8)
C250.0586 (11)0.0606 (12)0.0441 (10)−0.0065 (9)0.0093 (8)0.0051 (9)
C260.0854 (14)0.0546 (12)0.0503 (11)−0.0078 (10)0.0199 (10)−0.0104 (9)
C270.0706 (12)0.0402 (10)0.0548 (11)−0.0014 (9)0.0160 (9)−0.0023 (8)
C280.0490 (11)0.0698 (14)0.0991 (17)−0.0021 (10)−0.0219 (11)0.0089 (12)
C290.0626 (12)0.0446 (10)0.0609 (11)−0.0092 (9)0.0110 (9)−0.0070 (8)
F1—C251.355 (2)C19—C201.433 (2)
N1—C201.3745 (19)C21—C221.466 (2)
N1—C211.314 (2)C22—C231.387 (2)
N2—C31.4376 (19)C22—C271.384 (2)
N2—C71.3871 (18)C23—C241.373 (3)
N2—C211.380 (2)C24—C251.359 (3)
C1—C21.384 (2)C25—C261.358 (3)
C1—C61.387 (2)C26—C271.377 (3)
C1—C291.500 (2)C2—H20.9300
C2—C31.379 (2)C4—H40.9300
C3—C41.374 (2)C6—H60.9300
C4—C51.386 (2)C9—H90.9300
C5—C61.385 (2)C10—H100.9300
C5—C281.507 (2)C11—H110.9300
C7—C81.438 (2)C12—H120.9300
C7—C201.370 (2)C15—H150.9300
C8—C91.405 (2)C16—H160.9300
C8—C131.420 (2)C17—H170.9300
C9—C101.364 (3)C18—H180.9300
C10—C111.380 (3)C23—H230.9300
C11—C121.363 (3)C24—H240.9300
C12—C131.406 (3)C26—H260.9300
C13—C141.460 (2)C27—H270.9300
C14—C151.403 (3)C28—H28A0.9600
C14—C191.405 (2)C28—H28B0.9600
C15—C161.363 (4)C28—H28C0.9600
C16—C171.378 (3)C29—H29A0.9600
C17—C181.368 (3)C29—H29B0.9600
C18—C191.401 (2)C29—H29C0.9600
C20—N1—C21105.06 (13)C23—C24—C25118.82 (17)
C3—N2—C7127.18 (12)F1—C25—C24118.82 (17)
C3—N2—C21126.16 (12)F1—C25—C26118.79 (16)
C7—N2—C21106.41 (12)C24—C25—C26122.40 (17)
C2—C1—C6118.25 (15)C25—C26—C27118.46 (17)
C2—C1—C29120.14 (15)C22—C27—C26121.37 (17)
C6—C1—C29121.60 (15)C1—C2—H2120.00
C1—C2—C3119.71 (14)C3—C2—H2120.00
N2—C3—C2119.45 (13)C3—C4—H4120.00
N2—C3—C4119.00 (13)C5—C4—H4120.00
C2—C3—C4121.56 (14)C1—C6—H6119.00
C3—C4—C5119.85 (15)C5—C6—H6119.00
C4—C5—C6118.13 (15)C8—C9—H9119.00
C4—C5—C28120.42 (16)C10—C9—H9119.00
C6—C5—C28121.45 (16)C9—C10—H10120.00
C1—C6—C5122.49 (15)C11—C10—H10120.00
N2—C7—C8131.64 (14)C10—C11—H11120.00
N2—C7—C20105.12 (12)C12—C11—H11120.00
C8—C7—C20123.21 (13)C11—C12—H12119.00
C7—C8—C9124.93 (15)C13—C12—H12119.00
C7—C8—C13115.67 (14)C14—C15—H15119.00
C9—C8—C13119.38 (15)C16—C15—H15119.00
C8—C9—C10121.32 (17)C15—C16—H16119.00
C9—C10—C11119.83 (18)C17—C16—H16119.00
C10—C11—C12120.1 (2)C16—C17—H17120.00
C11—C12—C13122.54 (18)C18—C17—H17120.00
C8—C13—C12116.76 (16)C17—C18—H18120.00
C8—C13—C14121.27 (15)C19—C18—H18120.00
C12—C13—C14121.97 (16)C22—C23—H23119.00
C13—C14—C15122.53 (17)C24—C23—H23119.00
C13—C14—C19120.65 (15)C23—C24—H24121.00
C15—C14—C19116.82 (17)C25—C24—H24121.00
C14—C15—C16121.47 (19)C25—C26—H26121.00
C15—C16—C17121.3 (2)C27—C26—H26121.00
C16—C17—C18119.4 (2)C22—C27—H27119.00
C17—C18—C19120.32 (18)C26—C27—H27119.00
C14—C19—C18120.78 (16)C5—C28—H28A109.00
C14—C19—C20117.35 (15)C5—C28—H28B110.00
C18—C19—C20121.87 (15)C5—C28—H28C109.00
N1—C20—C7111.40 (13)H28A—C28—H28B109.00
N1—C20—C19126.79 (14)H28A—C28—H28C109.00
C7—C20—C19121.81 (14)H28B—C28—H28C109.00
N1—C21—N2112.01 (14)C1—C29—H29A109.00
N1—C21—C22123.78 (14)C1—C29—H29B109.00
N2—C21—C22124.20 (14)C1—C29—H29C109.00
C21—C22—C23118.68 (14)H29A—C29—H29B109.00
C21—C22—C27123.46 (15)H29A—C29—H29C109.00
C23—C22—C27117.85 (16)H29B—C29—H29C109.00
C22—C23—C24121.09 (16)
C20—N1—C21—C22−178.64 (14)C7—C8—C13—C14−1.7 (2)
C20—N1—C21—N20.33 (17)C9—C8—C13—C12−2.2 (2)
C21—N1—C20—C70.17 (17)C8—C9—C10—C110.3 (3)
C21—N1—C20—C19179.41 (15)C9—C10—C11—C12−1.4 (3)
C3—N2—C21—C223.7 (2)C10—C11—C12—C130.6 (4)
C7—N2—C21—C22178.27 (14)C11—C12—C13—C14−178.1 (2)
C3—N2—C7—C20175.21 (13)C11—C12—C13—C81.2 (3)
C21—N2—C7—C200.74 (16)C8—C13—C14—C15−179.38 (18)
C7—N2—C3—C4−99.85 (18)C12—C13—C14—C15−0.2 (3)
C21—N2—C3—C473.6 (2)C12—C13—C14—C19179.18 (18)
C21—N2—C7—C8−176.95 (16)C8—C13—C14—C190.0 (3)
C21—N2—C3—C2−106.97 (18)C13—C14—C15—C16178.9 (2)
C7—N2—C21—N1−0.70 (17)C19—C14—C15—C16−0.5 (3)
C7—N2—C3—C279.61 (19)C13—C14—C19—C18−179.21 (16)
C3—N2—C21—N1−175.24 (13)C13—C14—C19—C200.8 (2)
C3—N2—C7—C8−2.5 (3)C15—C14—C19—C180.2 (3)
C2—C1—C6—C5−0.5 (3)C15—C14—C19—C20−179.75 (17)
C29—C1—C6—C5178.91 (16)C14—C15—C16—C170.5 (4)
C6—C1—C2—C30.1 (2)C15—C16—C17—C18−0.3 (4)
C29—C1—C2—C3−179.29 (15)C16—C17—C18—C190.0 (3)
C1—C2—C3—N2−178.84 (14)C17—C18—C19—C20179.97 (18)
C1—C2—C3—C40.6 (2)C17—C18—C19—C140.0 (3)
N2—C3—C4—C5178.51 (14)C14—C19—C20—N1−179.08 (15)
C2—C3—C4—C5−0.9 (2)C18—C19—C20—N11.0 (3)
C3—C4—C5—C28−178.70 (16)C18—C19—C20—C7−179.86 (15)
C3—C4—C5—C60.6 (2)C14—C19—C20—C70.1 (2)
C4—C5—C6—C10.1 (3)N1—C21—C22—C2334.4 (2)
C28—C5—C6—C1179.37 (17)N1—C21—C22—C27−143.96 (17)
N2—C7—C8—C13179.98 (16)N2—C21—C22—C23−144.46 (16)
C20—C7—C8—C9−176.01 (16)N2—C21—C22—C2737.2 (2)
C20—C7—C8—C132.7 (2)C21—C22—C23—C24−179.86 (15)
N2—C7—C20—N1−0.58 (17)C27—C22—C23—C24−1.4 (2)
N2—C7—C20—C19−179.87 (14)C21—C22—C27—C26179.74 (18)
C8—C7—C20—N1177.36 (14)C23—C22—C27—C261.4 (3)
N2—C7—C8—C91.3 (3)C22—C23—C24—C250.3 (3)
C8—C7—C20—C19−1.9 (2)C23—C24—C25—F1−178.82 (16)
C9—C8—C13—C14177.08 (16)C23—C24—C25—C261.0 (3)
C7—C8—C9—C10−179.91 (17)F1—C25—C26—C27178.79 (18)
C13—C8—C9—C101.5 (3)C24—C25—C26—C27−1.0 (3)
C7—C8—C13—C12179.11 (17)C25—C26—C27—C22−0.2 (3)
D—H···AD—HH···AD···AD—H···A
C9—H9···Cg10.93002.97003.8433156.00
C6—H6···Cg2i0.93002.97003.6994155.00
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of the C7/C8/C13/C14/C19/C20 and C8–C13 rings, respectively.

D—H⋯A D—HH⋯A DA D—H⋯A
C9—H9⋯Cg10.932.973.84156
C6—H6⋯Cg2i 0.932.973.70155

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Photophysics and electron transfer in poly(3-octylthiophene) alternating with Ru(II)- and Os(II)-bipyridine complexes.

Authors:  K A Walters; L Trouillet; S Guillerez; K S Schanze
Journal:  Inorg Chem       Date:  2000-11-27       Impact factor: 5.165

Review 3.  P450 genes: structure, evolution, and regulation.

Authors:  D W Nebert; F J Gonzalez
Journal:  Annu Rev Biochem       Date:  1987       Impact factor: 23.643

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  1 in total

1.  1-(4-Meth-oxy-phen-yl)-2-[4-(tri-fluoro-meth-yl)phen-yl]-1H-phenanthro[9,10-d]imidazole.

Authors:  T Mohandas; R Sathishkumar; J Jayabharathi; A Pasupathi; P Sakthivel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-20
  1 in total

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