Literature DB >> 24109312

Bis(1,3-dimethyl-1H-imidazolium) hexa-fluoro-silicate: the second monoclinic polymorph.

Chong Tian1, Wanli Nie, Maxim V Borzov.   

Abstract

The title compound, 2C5H9N2 (+)·SiF6 (2-), (I), crystallized as a new polymorph, different from the previously reported one (Ia) [Light et al. (2007 ▶) private communication (refcode: NIQFAV). CCDC, Cambridge, England]. The symmetry [space groups P21/n for (I) and C2/c for(Ia)] and crystal packing patterns are markedly different for this pair of polymorphs. In (I), all imidazolium cations in the lattice are nearly parallel to each other, whereas a herringbone arrangement can be found in (Ia). In (I), each SiF6 (2-) dianion forms four short C-H⋯F contacts with adjacent C5H9N2 (+) cations, resulting in the formation of layers parallel to the ac plane. In (Ia), the C-H⋯F contacts are generally longer and result in the formation of layers along the bc plane.

Entities:  

Year:  2013        PMID: 24109312      PMCID: PMC3793725          DOI: 10.1107/S1600536813018242

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structure of the previously reported polymorph of (I) and its solvatomorph 6C5H9N2 +·3SiF6 2−·CH3OH, see: Light et al. (2007 ▶) and Tian et al. (2013 ▶), respectively. For an overview of polymorphism, see: Bernstein (2002 ▶); Linden (2011 ▶). For the practical importance of sterically non-hindered 1,3-dialkyl-1H-imidazolium salts with perfluoro anions of the main-group elements in the preparation of Arduengo carbene adducts, see: Tian et al. (2012 ▶). For graph-set notation, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶); Grell et al. (1999 ▶).

Experimental

Crystal data

2C5H9N2+·SiF6 2− M = 336.38 Monoclinic, a = 8.2240 (8) Å b = 9.7901 (9) Å c = 8.7753 (9) Å β = 90.106 (1)° V = 706.53 (12) Å3 Z = 2 Mo Kα radiation μ = 0.23 mm−1 T = 296 K 0.40 × 0.39 × 0.05 mm

Data collection

Bruker SMART APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.913, T max = 0.988 3670 measured reflections 1373 independent reflections 1228 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.081 S = 1.09 1373 reflections 134 parameters All H-atom parameters refined Δρmax = 0.18 e Å−3 Δρmin = −0.22 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: SHELXTL and OLEX2. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813018242/ld2107sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813018242/ld2107Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813018242/ld2107Isup3.cdx Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C5H9N2+·SiF62F(000) = 348
Mr = 336.38Dx = 1.581 Mg m3
Monoclinic, P21/nMelting point: 550 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 8.2240 (8) ÅCell parameters from 3479 reflections
b = 9.7901 (9) Åθ = 2.3–28.3°
c = 8.7753 (9) ŵ = 0.23 mm1
β = 90.106 (1)°T = 296 K
V = 706.53 (12) Å3Plate, colourless
Z = 20.40 × 0.39 × 0.05 mm
Bruker SMART APEXII diffractometer1373 independent reflections
Radiation source: fine-focus sealed tube1228 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.020
Detector resolution: 8.333 pixels mm-1θmax = 26.0°, θmin = 3.2°
phi and ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −12→9
Tmin = 0.913, Tmax = 0.988l = −10→8
3670 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.028All H-atom parameters refined
wR(F2) = 0.081w = 1/[σ2(Fo2) + (0.0471P)2 + 0.1056P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
1373 reflectionsΔρmax = 0.18 e Å3
134 parametersΔρmin = −0.22 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.065 (7)
Experimental. A very tight closeness of the β-angle to 90° presented a certain difficulty in determination of the actual crystal system and the space group for (I).
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Si10.50000.50000.50000.02918 (18)
F10.31022 (9)0.53884 (9)0.55758 (10)0.0445 (3)
F20.51424 (12)0.38309 (9)0.63991 (10)0.0563 (3)
F30.42533 (10)0.38065 (9)0.38175 (11)0.0532 (3)
N10.22279 (13)0.08942 (11)0.52963 (12)0.0362 (3)
N20.34964 (14)−0.03111 (12)0.36255 (13)0.0373 (3)
C10.31135 (17)0.09435 (15)0.40423 (16)0.0387 (3)
C20.20313 (19)−0.04525 (15)0.56970 (17)0.0419 (3)
C30.28241 (18)−0.12049 (16)0.46592 (16)0.0423 (3)
C40.1593 (2)0.20729 (16)0.61283 (19)0.0462 (4)
C50.4404 (2)−0.06783 (19)0.22545 (18)0.0482 (4)
H10.341 (2)0.1721 (19)0.3610 (19)0.048 (4)*
H20.146 (2)−0.0695 (18)0.658 (2)0.054 (5)*
H30.297 (2)−0.2124 (19)0.4561 (19)0.050 (5)*
H4A0.218 (3)0.282 (2)0.590 (2)0.074 (6)*
H4B0.048 (3)0.227 (2)0.580 (3)0.080 (6)*
H4C0.162 (3)0.188 (2)0.718 (3)0.093 (7)*
H5A0.538 (3)−0.015 (2)0.227 (3)0.071 (6)*
H5B0.377 (3)−0.058 (2)0.141 (3)0.074 (6)*
H5C0.479 (3)−0.164 (3)0.229 (3)0.094 (7)*
U11U22U33U12U13U23
Si10.0312 (3)0.0258 (3)0.0306 (3)−0.00187 (16)0.00740 (19)−0.00332 (17)
F10.0342 (4)0.0494 (5)0.0499 (5)0.0012 (3)0.0113 (4)−0.0102 (4)
F20.0701 (6)0.0494 (5)0.0494 (5)0.0135 (4)0.0180 (4)0.0160 (4)
F30.0480 (5)0.0516 (5)0.0599 (6)−0.0113 (4)0.0085 (4)−0.0269 (4)
N10.0388 (6)0.0355 (6)0.0343 (6)−0.0044 (4)0.0013 (5)0.0033 (4)
N20.0358 (6)0.0419 (6)0.0343 (6)−0.0026 (5)−0.0012 (5)0.0007 (4)
C10.0409 (7)0.0381 (7)0.0371 (7)−0.0041 (6)0.0022 (6)0.0054 (6)
C20.0483 (8)0.0387 (7)0.0386 (7)−0.0075 (6)0.0025 (6)0.0060 (6)
C30.0488 (8)0.0361 (7)0.0419 (8)−0.0048 (6)−0.0018 (6)0.0034 (6)
C40.0532 (9)0.0391 (8)0.0463 (9)−0.0031 (7)0.0107 (7)−0.0017 (6)
C50.0454 (8)0.0607 (10)0.0384 (8)0.0026 (7)0.0036 (6)−0.0050 (7)
Si1—F3i1.6783 (8)N2—C51.4619 (19)
Si1—F31.6783 (8)C1—H10.884 (19)
Si1—F21.6824 (8)C2—C31.341 (2)
Si1—F2i1.6824 (8)C2—H20.934 (19)
Si1—F11.6849 (8)C3—H30.912 (18)
Si1—F1i1.6849 (8)C4—H4A0.90 (2)
N1—C11.3216 (18)C4—H4B0.98 (2)
N1—C21.3742 (18)C4—H4C0.94 (3)
N1—C41.4625 (19)C5—H5A0.96 (3)
N2—C11.3199 (18)C5—H5B0.91 (2)
N2—C31.3770 (19)C5—H5C0.99 (3)
F3i—Si1—F3180.0N2—C1—N1109.20 (12)
F3i—Si1—F289.86 (5)N2—C1—H1128.1 (11)
F3—Si1—F290.14 (5)N1—C1—H1122.7 (11)
F3i—Si1—F2i90.14 (5)C3—C2—N1107.19 (13)
F3—Si1—F2i89.86 (5)C3—C2—H2131.8 (11)
F2—Si1—F2i180.0N1—C2—H2121.0 (11)
F3i—Si1—F189.75 (4)C2—C3—N2107.14 (13)
F3—Si1—F190.25 (4)C2—C3—H3132.2 (11)
F2—Si1—F189.88 (4)N2—C3—H3120.6 (11)
F2i—Si1—F190.12 (4)N1—C4—H4A109.4 (14)
F3i—Si1—F1i90.25 (4)N1—C4—H4B110.0 (13)
F3—Si1—F1i89.75 (4)H4A—C4—H4B106.4 (18)
F2—Si1—F1i90.12 (4)N1—C4—H4C108.6 (15)
F2i—Si1—F1i89.88 (4)H4A—C4—H4C112 (2)
F1—Si1—F1i180.00 (6)H4B—C4—H4C110 (2)
C1—N1—C2108.26 (12)N2—C5—H5A106.3 (14)
C1—N1—C4125.78 (12)N2—C5—H5B110.8 (14)
C2—N1—C4125.94 (12)H5A—C5—H5B115.6 (19)
C1—N2—C3108.21 (12)N2—C5—H5C111.8 (14)
C1—N2—C5125.41 (13)H5A—C5—H5C104.5 (19)
C3—N2—C5126.31 (13)H5B—C5—H5C107.7 (19)
C3—N2—C1—N10.05 (16)C4—N1—C2—C3−178.71 (14)
C5—N2—C1—N1177.05 (13)N1—C2—C3—N2−0.22 (17)
C2—N1—C1—N2−0.19 (16)C1—N2—C3—C20.11 (17)
C4—N1—C1—N2178.78 (13)C5—N2—C3—C2−176.85 (14)
C1—N1—C2—C30.26 (16)
D—H···AD—HH···AD···AD—H···A
C1—H1···F30.884 (18)2.164 (19)2.9622 (17)149.8 (14)
C2ii—H2ii···F20.934 (19)2.26 (2)3.1935 (18)174.0 (5)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C1—H1⋯F30.884 (18)2.164 (19)2.9622 (17)149.8 (14)
C2i—H2i⋯F20.934 (19)2.26 (2)3.1935 (18)174.0 (5)

Symmetry code: (i) .

  4 in total

1.  Virtual issue on polymorphism.

Authors:  Anthony Linden
Journal:  Acta Crystallogr C       Date:  2010-12-30       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

4.  Bis(1,3-dimethyl-1H-imidazolium) hexa-fluoro-silicate methanol 0.33-solvate.

Authors:  Chong Tian; Wanli Nie; Maxim V Borzov
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-06
  4 in total
  1 in total

1.  Bis(1,3-dimethyl-1H-imidazolium) hexa-fluoro-silicate methanol 0.33-solvate.

Authors:  Chong Tian; Wanli Nie; Maxim V Borzov
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-06
  1 in total

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