Literature DB >> 24109311

Bis(1,3-dimethyl-1H-imidazolium) hexa-fluoro-silicate methanol 0.33-solvate.

Chong Tian1, Wanli Nie, Maxim V Borzov.   

Abstract

The title compound, 6C5H9N2 (+)·3SiF6 (2-)·CH3OH, (I), was prepared by recrystallization of the crude salt from methanol along with solvent-free 2C5H9N2 (+)·SiF6 (2-) (II). Crystals of these solvatomorphs can be separated manually. The solvate (I) crystallizes in a rare hexa-gonal space group P6/mcc. Its asymmetric unit comprises one half of an imidazolium cation bis-ected by the crystallographic m-plane, one-sixth and one-twelfth of two crystallographically independent SiF6 (2-) dianions (Si atoms are located on the 3.2 and 6/m inversion centres), and one-twelfth of a methanol mol-ecule (C atoms are situated on the 622 inversion centres, other atoms are disordered between general positions). In (I), all F atoms of 3.2-located SiF6 (2-) dianions participate in the formation of symmetry-equivalent contacts to the H atoms of imidazolium fragments, thus forming rod-type ensembles positioned on the -6 axes. These 'pillar' rods are, in turn, F⋯H inter-linked through SiF6 (2-) dianions disordered around the 6/m centres. The twelvefold disordered methanol mol-ecules are appended to this array by O-H⋯F hydrogen bonds to the 6/m located SiF6 (2-) dianions. In terms of graph-set notation, the first and second level networks in (I) are N 1 = C 2 (2)(7)[3R 4 (4)(14)]D 2 (2)(4) and N 2 = D 2 (2)(5) (C-H⋯O hydrogen bonds are not considered). After locating all symmetrically independent atoms in the cation and anions, there remained a strong (> 3 e Å(-3)) residual electron density peak located at the 622 inversion centre. Treatment of this pre-refined model with the SQUEEZE procedure in PLATON [Spek (2009). Acta Cryst. D65, 148-155] revealed two voids per unit cell, indicative of the presence of the solvent methanol mol-ecule disordered about the 622 inversion centre.

Entities:  

Year:  2013        PMID: 24109311      PMCID: PMC3793724          DOI: 10.1107/S1600536813018230

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For solvatomorphs of (I), see: Light et al. (2007 ▶); Tian et al. (2013 ▶). For solvatomorphism of (1,3-dimethyl-1H-imidazolium) hexa­fluoro­phosphate, C5H9N2 +·PF6 −, see: Holbrey et al. (2003 ▶). For the practical utility of sterically non-hindered 1,3-dialkyl-1H-imidazolium salts with BF4 − and PF6 − anions for the preparation of Arduengo carbene adducts with BF3 and PF5, see: Tian et al. (2012 ▶). For graph-set notation, see: Etter et al. (1990 ▶); Bernstein et al. (1995 ▶); Grell et al. (1999 ▶). For a description of the Cambridge Structural Database, see: Allen (2002 ▶). For the SQUEEZE procedure in PLATON, see: Spek (2009 ▶).

Experimental

Crystal data

6C5H9N2 +·3SiF6 2−·CH4O M = 1041.10 Hexagonal, a = 12.6577 (7) Å c = 16.8174 (18) Å V = 2333.5 (3) Å3 Z = 2 Mo Kα radiation μ = 0.22 mm−1 T = 296 K 0.32 × 0.20 × 0.15 mm

Data collection

Bruker SMART APEXII diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.934, T max = 0.968 11115 measured reflections 804 independent reflections 623 reflections with I > 2σ(I) R int = 0.045

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.098 S = 1.10 804 reflections 75 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.15 e Å−3 Δρmin = −0.41 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶) and OLEX2 (Dolomanov et al., 2009 ▶); software used to prepare material for publication: SHELXTL and OLEX2. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813018230/im2435sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813018230/im2435Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813018230/im2435Isup3.cdx Additional supplementary materials: crystallographic information; 3D view; checkCIF report
6C5H9N2+·3SiF62·CH4ODx = 1.482 Mg m3
Mr = 1041.10Melting point: 550 K
Hexagonal, P6/mccMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 6 2cCell parameters from 4399 reflections
a = 12.6577 (7) Åθ = 2.4–28.0°
c = 16.8174 (18) ŵ = 0.22 mm1
V = 2333.5 (3) Å3T = 296 K
Z = 2Block, yellow
F(000) = 10800.32 × 0.20 × 0.15 mm
Bruker SMART APEXII diffractometer804 independent reflections
Radiation source: fine-focus sealed tube623 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.045
Detector resolution: 8.333 pixels mm-1θmax = 26.0°, θmin = 1.9°
phi and ω scansh = −15→11
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −12→15
Tmin = 0.934, Tmax = 0.968l = −20→20
11115 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098H atoms treated by a mixture of independent and constrained refinement
S = 1.10w = 1/[σ2(Fo2) + (0.056P)2 + 0.3029P] where P = (Fo2 + 2Fc2)/3
804 reflections(Δ/σ)max < 0.001
75 parametersΔρmax = 0.15 e Å3
0 restraintsΔρmin = −0.41 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
N10.32338 (12)0.39168 (13)0.06402 (9)0.0388 (4)
C10.2983 (2)0.3220 (2)0.00000.0404 (6)
H10.266 (2)0.237 (3)0.00000.051 (7)*
C20.36659 (17)0.51001 (18)0.03979 (11)0.0430 (4)
H20.389 (2)0.571 (2)0.0769 (12)0.056 (6)*
C30.3094 (2)0.3496 (2)0.14668 (13)0.0560 (6)
H3BD0.24180.26780.15040.084*0.84 (3)
H3BE0.29460.40230.18010.084*0.84 (3)
H3BF0.38250.35110.16360.084*0.84 (3)
H3AA0.22560.28990.15640.084*0.16 (3)
H3AB0.33370.41760.18190.084*0.16 (3)
H3AC0.35970.31390.15580.084*0.16 (3)
Si10.00000.00000.00000.0319 (4)
F10.12523 (16)0.0637 (2)0.05780 (10)0.0459 (5)0.50
Si20.66670.33330.25000.0318 (3)
F20.55741 (10)0.33189 (10)0.19222 (6)0.0525 (4)
C40.00000.00000.25000.115 (4)
H4A0.00300.00040.30700.138*0.0833333
H4B−0.0606−0.07940.23180.138*0.0833333
H4C−0.02070.05950.23220.138*0.0833333
O10.102 (5)0.025 (17)0.2226 (9)0.115 (19)0.0833333
H1A0.10860.03450.17250.138*0.0833333
U11U22U33U12U13U23
N10.0411 (8)0.0412 (8)0.0345 (8)0.0209 (7)0.0001 (6)0.0030 (6)
C10.0377 (13)0.0359 (14)0.0443 (15)0.0159 (11)0.0000.000
C20.0544 (11)0.0407 (10)0.0386 (9)0.0273 (9)−0.0032 (8)−0.0029 (8)
C30.0683 (13)0.0664 (13)0.0373 (10)0.0367 (11)0.0040 (9)0.0137 (9)
Si10.0316 (5)0.0316 (5)0.0324 (8)0.0158 (3)0.0000.000
F10.0390 (10)0.0499 (13)0.0438 (11)0.0184 (11)−0.0091 (9)−0.0027 (10)
Si20.0362 (4)0.0362 (4)0.0230 (5)0.0181 (2)0.0000.000
F20.0504 (7)0.0644 (7)0.0466 (7)0.0316 (6)−0.0081 (5)0.0106 (5)
C40.145 (7)0.145 (7)0.056 (7)0.072 (4)0.0000.000
O10.08 (2)0.21 (5)0.048 (10)0.07 (4)−0.005 (19)−0.04 (5)
N1—C11.326 (2)C3—H3AA0.9600
N1—C21.375 (2)C3—H3AB0.9600
N1—C31.467 (2)C3—H3AC0.9600
C1—N1i1.326 (2)Si1—F11.6821 (17)
C1—H10.94 (3)Si2—F21.6829 (10)
C2—C2i1.338 (4)C4—O11.25 (2)
C2—H20.92 (2)C4—H4A0.9600
C3—H3BD0.9600C4—H4B0.9600
C3—H3BE0.9600C4—H4C0.9600
C3—H3BF0.9600O1—H1A0.8498
C1—N1—C2108.46 (16)O1x—C4—O1ix55.4 (3)
C1—N1—C3125.63 (17)O1xiv—C4—O1xvii55.4 (3)
C2—N1—C3125.90 (16)O1x—C4—O1xvii150 (10)
N1i—C1—N1108.6 (2)O1ix—C4—O1xvii96 (10)
N1i—C1—H1125.69 (12)O1xiv—C4—O1xviii136.8 (15)
N1—C1—H1125.69 (12)O1x—C4—O1xviii51 (10)
C2i—C2—N1107.25 (10)O1ix—C4—O1xviii53 (10)
C2i—C2—H2132.8 (13)O1xvii—C4—O1xviii107.3 (8)
N1—C2—H2120.0 (13)O1xiv—C4—O1iii51 (10)
N1—C3—H3BD109.5O1x—C4—O1iii136.8 (15)
N1—C3—H3BE109.5O1ix—C4—O1iii107.3 (8)
H3BD—C3—H3BE109.5O1xvii—C4—O1iii53 (10)
N1—C3—H3BF109.5O1xviii—C4—O1iii154 (10)
H3BD—C3—H3BF109.5O1xiv—C4—O1vi100 (10)
H3BE—C3—H3BF109.5O1x—C4—O1vi55.4 (3)
N1—C3—H3AA109.5O1ix—C4—O1vi107.3 (8)
N1—C3—H3AB109.5O1xvii—C4—O1vi154 (10)
H3AA—C3—H3AB109.5O1xviii—C4—O1vi96 (10)
N1—C3—H3AC109.5O1iii—C4—O1vi107.3 (8)
H3AA—C3—H3AC109.5O1xiv—C4—O1xix55.4 (3)
H3AB—C3—H3AC109.5O1x—C4—O1xix100 (10)
F1ii—Si1—F1iii180.00 (19)O1ix—C4—O1xix154 (10)
F1ii—Si1—F1iv48.16 (4)O1xvii—C4—O1xix107.3 (8)
F1iii—Si1—F1iv131.84 (4)O1xviii—C4—O1xix107.3 (8)
F1ii—Si1—F1v89.94 (9)O1iii—C4—O1xix96 (10)
F1iii—Si1—F1v90.06 (9)O1vi—C4—O1xix53 (10)
F1iv—Si1—F1v48.16 (4)O1xiv—C4—O1xx107.3 (8)
F1ii—Si1—F1vi90.06 (9)O1x—C4—O1xx53 (10)
F1iii—Si1—F1vi89.94 (9)O1ix—C4—O1xx100 (10)
F1iv—Si1—F1vi131.84 (4)O1xvii—C4—O1xx136.8 (15)
F1v—Si1—F1vi180.00 (13)O1xviii—C4—O1xx55.4 (3)
F1ii—Si1—F1vii131.84 (4)O1iii—C4—O1xx150 (10)
F1iii—Si1—F1vii48.16 (4)O1vi—C4—O1xx51 (10)
F1iv—Si1—F1vii90.06 (9)O1xix—C4—O1xx55.4 (3)
F1v—Si1—F1vii70.61 (12)O1xiv—C4—O1xxi107.3 (8)
F1vi—Si1—F1vii109.39 (12)O1x—C4—O1xxi96 (10)
F1ii—Si1—F1viii48.16 (4)O1ix—C4—O1xxi51 (10)
F1iii—Si1—F1viii131.84 (4)O1xvii—C4—O1xxi55.4 (3)
F1iv—Si1—F1viii89.94 (9)O1xviii—C4—O1xxi55.4 (3)
F1v—Si1—F1viii109.39 (12)O1iii—C4—O1xxi100 (10)
F1vi—Si1—F1viii70.61 (12)O1vi—C4—O1xxi150 (10)
F1vii—Si1—F1viii180.00 (13)O1xix—C4—O1xxi136.8 (15)
F1ii—Si1—F1ix90.06 (9)O1xx—C4—O1xxi107.3 (8)
F1iii—Si1—F1ix89.94 (9)O1xiv—C4—O1vii96 (10)
F1iv—Si1—F1ix70.61 (12)O1x—C4—O1vii107.3 (8)
F1v—Si1—F1ix90.06 (9)O1ix—C4—O1vii55.4 (3)
F1vi—Si1—F1ix89.94 (9)O1xvii—C4—O1vii51 (10)
F1vii—Si1—F1ix48.16 (4)O1xviii—C4—O1vii100 (10)
F1viii—Si1—F1ix131.84 (4)O1iii—C4—O1vii55.4 (3)
F1ii—Si1—F1i89.94 (9)O1vi—C4—O1vii136.8 (15)
F1iii—Si1—F1i90.06 (9)O1xix—C4—O1vii150 (10)
F1iv—Si1—F1i109.39 (12)O1xx—C4—O1vii154 (10)
F1v—Si1—F1i89.94 (9)O1xxi—C4—O1vii53 (10)
F1vi—Si1—F1i90.06 (9)O1xiv—C4—O153 (10)
F1vii—Si1—F1i131.84 (4)O1x—C4—O1107.3 (8)
F1viii—Si1—F1i48.16 (4)O1ix—C4—O1136.8 (15)
F1ix—Si1—F1i180.00 (14)O1xvii—C4—O1100 (10)
F1ii—Si1—F1x70.61 (12)O1xviii—C4—O1150 (10)
F1iii—Si1—F1x109.39 (12)O1iii—C4—O155.4 (3)
F1iv—Si1—F1x90.06 (9)O1vi—C4—O155.4 (3)
F1v—Si1—F1x131.84 (4)O1xix—C4—O151 (10)
F1vi—Si1—F1x48.16 (4)O1xx—C4—O196 (10)
F1vii—Si1—F1x89.94 (9)O1xxi—C4—O1154 (10)
F1viii—Si1—F1x90.06 (9)O1vii—C4—O1107.3 (8)
F1ix—Si1—F1x48.16 (4)O1xiv—C4—H4A66.7
F1i—Si1—F1x131.84 (4)O1x—C4—H4A112.4
F1ii—Si1—F1xi109.39 (12)O1ix—C4—H4A113.7
F1iii—Si1—F1xi70.61 (12)O1xvii—C4—H4A68.7
F1iv—Si1—F1xi89.94 (9)O1xviii—C4—H4A70.1
F1v—Si1—F1xi48.16 (4)O1iii—C4—H4A110.7
F1vi—Si1—F1xi131.84 (4)O1vi—C4—H4A110.3
F1vii—Si1—F1xi90.06 (9)O1xix—C4—H4A66.4
F1viii—Si1—F1xi89.94 (9)O1xx—C4—H4A68.1
F1ix—Si1—F1xi131.84 (4)O1xxi—C4—H4A70.4
F1i—Si1—F1xi48.16 (4)O1vii—C4—H4A112.9
F1x—Si1—F1xi180.00 (19)O1—C4—H4A109.5
F1ii—Si1—F1131.84 (4)O1xiv—C4—H4B154.5
F1iii—Si1—F148.16 (4)O1x—C4—H4B3.1
F1iv—Si1—F1180.0O1ix—C4—H4B55.4
F1v—Si1—F1131.83 (4)O1xvii—C4—H4B148.9
F1vi—Si1—F148.17 (4)O1xviii—C4—H4B48.1
F1vii—Si1—F189.94 (9)O1iii—C4—H4B139.8
F1viii—Si1—F190.06 (9)O1vi—C4—H4B56.8
F1ix—Si1—F1109.39 (12)O1xix—C4—H4B99.4
F1i—Si1—F170.61 (12)O1xx—C4—H4B51.6
F1x—Si1—F189.95 (9)O1xxi—C4—H4B94.1
F1xi—Si1—F190.05 (9)O1vii—C4—H4B108.2
F2xii—Si2—F2xiii89.25 (7)O1—C4—H4B109.5
F2xii—Si2—F2xiv89.99 (6)H4A—C4—H4B109.5
F2xiii—Si2—F2xiv90.77 (8)O1xiv—C4—H4C95.1
F2xii—Si2—F2xv90.77 (8)O1x—C4—H4C108.7
F2xiii—Si2—F2xv89.99 (6)O1ix—C4—H4C55.7
F2xiv—Si2—F2xv178.93 (8)O1xvii—C4—H4C48.5
F2xii—Si2—F2xvi89.99 (6)O1xviii—C4—H4C98.1
F2xiii—Si2—F2xvi178.93 (8)O1iii—C4—H4C56.6
F2xiv—Si2—F2xvi89.99 (6)O1vi—C4—H4C140.2
F2xv—Si2—F2xvi89.25 (7)O1xix—C4—H4C150.0
F2xii—Si2—F2178.93 (8)O1xx—C4—H4C153.2
F2xiii—Si2—F289.99 (6)O1xxi—C4—H4C50.5
F2xiv—Si2—F289.25 (7)O1vii—C4—H4C3.4
F2xv—Si2—F289.99 (6)O1—C4—H4C109.5
F2xvi—Si2—F290.77 (8)H4A—C4—H4C109.5
O1xiv—C4—O1x154 (10)H4B—C4—H4C109.5
O1xiv—C4—O1ix150 (10)C4—O1—H1A114.9
C2—N1—C1—N1i−0.3 (3)C1—N1—C2—C2i0.18 (16)
C3—N1—C1—N1i−179.32 (13)C3—N1—C2—C2i179.20 (14)
D—H···AD—HH···AD···AD—H···A
O1—H1A···F10.851.96 (1)2.80 (3)177 (13)
C1—H1···F10.94 (3)2.24 (3)3.044 (3)143 (2)
C2—H2···F2xxii0.92 (2)2.21 (2)3.095 (2)160.3 (17)
D—H···AD—HH···AD···AD—H···A
O1—H1A···F10.851.955 (2)2.80 (3)177 (13)
C1—H1···F10.94 (3)2.24 (3)3.044 (3)143 (2)
C2—H2···F2xxii0.92 (2)2.21 (2)3.095 (2)160 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1A⋯F10.851.96 (1)2.80 (3)177 (13)
C1—H1⋯F10.94 (3)2.24 (3)3.044 (3)143 (2)
C2—H2⋯F2i 0.92 (2)2.21 (2)3.095 (2)160.3 (17)

Symmetry code: (i) .

  6 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

4.  Liquid clathrate formation in ionic liquid-aromatic mixtures.

Authors:  John D Holbrey; W Matthew Reichert; Mark Nieuwenhuyzen; Oonagh Sheppard; Christopher Hardacre; Robin D Rogers
Journal:  Chem Commun (Camb)       Date:  2003-02-21       Impact factor: 6.222

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

6.  Bis(1,3-dimethyl-1H-imidazolium) hexa-fluoro-silicate: the second monoclinic polymorph.

Authors:  Chong Tian; Wanli Nie; Maxim V Borzov
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-06
  6 in total
  1 in total

1.  Bis(1,3-dimethyl-1H-imidazolium) hexa-fluoro-silicate: the second monoclinic polymorph.

Authors:  Chong Tian; Wanli Nie; Maxim V Borzov
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-07-06
  1 in total

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