Literature DB >> 24109293

2-[1'-(Benz-yloxy)spiro-[indane-1,2'-pyrrolidine]-5'-yl]aceto-nitrile.

Rodolfo Moreno-Fuquen1, Diana M Soto, Luz M Jaramillo-Gómez, Javier Ellena, Juan C Tenorio.   

Abstract

In the title compound, C21H22N2O, the planes of the two six-membered rings make a dihedral angle of 89.51 (7)°. The pyrrolidine ring has a puckering amplitude q 2 = 0.418 (3) and a pseudo-rotation phase angle ϕ2 = -166.8 (5), adopting a twist conformation (T). The other five-membered ring has a puckering amplitude q 2 = 0.247 (2) and a pseudo-rotation phase angle ϕ2 = -173.7 (5), adopting an envelope conformation with the CH2 atom adjacent to the C atom common with the pyrrolidine ring as the flap. In the crystal, mol-ecules are linked via C-H⋯N, enclosing R (2) 2(20) rings, forming chains propagating along [100]. The aceto-nitrile group is disordered over two positions and was refined with a fixed occupancy ratio of 0.56:0.44.

Entities:  

Year:  2013        PMID: 24109293      PMCID: PMC3793706          DOI: 10.1107/S1600536813017674

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For radical cyclization of 1-aza­spiro compounds, see: El Bialy et al. (2004 ▶); Dake (2006 ▶). For cephalotaxine synthesis, see: Paudler et al. (1963 ▶); Planas et al. (2004 ▶). For esters with anti­leukemic activity, see: Benderra et al. (1998 ▶); Kantarjian et al. (2001 ▶); Lévy et al. (2006 ▶). For pyrrolidine properties, see: Chen et al. (2012 ▶); Boyd et al. (1999 ▶). For tandem reactions under radical conditions, see: Jaramillo-Gómez et al. (2006 ▶). For bond-length data, see: Allen et al. (1987 ▶). For hydrogen bonding, see: Nardelli (1995 ▶) and for hydrogen-bond motifs, see: Etter (1990 ▶). For ring torsion angles, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C21H22N2O M = 318.41 Triclinic, a = 9.1688 (4) Å b = 10.0800 (4) Å c = 11.4141 (6) Å α = 98.826 (2)° β = 108.777 (2)° γ = 110.403 (4)° V = 893.17 (7) Å3 Z = 2 Mo Kα radiation μ = 0.07 mm−1 T = 295 K 0.29 × 0.25 × 0.15 mm

Data collection

Nonius KappaCCD diffractometer 6429 measured reflections 3617 independent reflections 2307 reflections with I > 2σ(I) R int = 0.063

Refinement

R[F 2 > 2σ(F 2)] = 0.059 wR(F 2) = 0.191 S = 1.05 3617 reflections 249 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.11 e Å−3 Δρmin = −0.13 e Å−3 Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DENZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813017674/hg5325sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813017674/hg5325Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813017674/hg5325Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H22N2OZ = 2
Mr = 318.41F(000) = 340
Triclinic, P1Dx = 1.184 Mg m3
Hall symbol: -P 1Melting point: 372(1) K
a = 9.1688 (4) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.0800 (4) ÅCell parameters from 5157 reflections
c = 11.4141 (6) Åθ = 2.9–25.7°
α = 98.826 (2)°µ = 0.07 mm1
β = 108.777 (2)°T = 295 K
γ = 110.403 (4)°Block, white
V = 893.17 (7) Å30.29 × 0.25 × 0.15 mm
Nonius KappaCCD diffractometer2307 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.063
Graphite monochromatorθmax = 26.4°, θmin = 3.0°
CCD rotation images, thick slices scansh = −11→10
6429 measured reflectionsk = −12→12
3617 independent reflectionsl = −14→14
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.059Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.191H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0894P)2 + 0.0489P] where P = (Fo2 + 2Fc2)/3
3617 reflections(Δ/σ)max < 0.001
249 parametersΔρmax = 0.11 e Å3
3 restraintsΔρmin = −0.13 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O10.48268 (14)0.93003 (12)0.30050 (11)0.0770 (4)
N10.46487 (19)0.78319 (16)0.30577 (14)0.0779 (4)
C10.2926 (2)0.66924 (19)0.20916 (18)0.0789 (5)
C20.1560 (2)0.72661 (18)0.18692 (19)0.0784 (5)
C30.0707 (3)0.7469 (2)0.2642 (2)0.1021 (7)
H30.09100.71980.34010.123*
C4−0.0441 (3)0.8075 (3)0.2276 (3)0.1190 (8)
H4−0.10110.82120.27940.143*
C5−0.0749 (3)0.8472 (3)0.1174 (3)0.1224 (9)
H5−0.15030.89050.09550.147*
C60.0039 (3)0.8241 (3)0.0373 (2)0.1114 (8)
H6−0.01980.8491−0.03960.134*
C70.1202 (2)0.7625 (2)0.07324 (19)0.0878 (5)
C80.2196 (3)0.7262 (3)0.0030 (2)0.1071 (7)
H8A0.31100.81550.00830.128*
H8B0.14700.6717−0.08760.128*
C90.2901 (3)0.6305 (2)0.07358 (19)0.0958 (6)
H9A0.21810.52600.02810.115*
H9B0.40410.65190.07890.115*
C100.2684 (4)0.5431 (3)0.2722 (3)0.1171 (8)
H10A0.15380.50140.26860.141*
H10B0.28670.46480.22690.141*
C110.3975 (4)0.6097 (3)0.4117 (3)0.1284 (10)
H11A0.34330.58350.47030.154*
H11B0.48620.57510.42510.154*
C120.4700 (4)0.7747 (3)0.4335 (2)0.1040 (7)
C150.6189 (2)0.9965 (2)0.2623 (2)0.0990 (7)
H15A0.59620.93670.17780.119*
H15B0.72531.00500.32460.119*
C160.6290 (2)1.1473 (2)0.2575 (2)0.0853 (5)
C170.4913 (2)1.1636 (2)0.1765 (2)0.1015 (7)
H170.39091.07990.12440.122*
C180.5008 (3)1.3020 (2)0.1720 (2)0.1035 (7)
H180.40721.31080.11670.124*
C190.6473 (3)1.4269 (2)0.2482 (2)0.0987 (6)
H190.65351.52030.24500.118*
C200.7837 (3)1.4125 (2)0.3289 (2)0.0985 (7)
H200.88331.49680.38110.118*
C210.7759 (2)1.2749 (2)0.3340 (2)0.0913 (6)
H210.87041.26740.38960.110*
N2A0.8984 (16)0.801 (2)0.4992 (18)0.115 (3)0.44
C13A0.6184 (11)0.8347 (10)0.5469 (9)0.097 (2)0.44
H1310.59340.80120.61630.116*0.44
H1320.66440.94210.57270.116*0.44
C14A0.7383 (11)0.7889 (10)0.5243 (10)0.088 (2)0.44
N2B0.8463 (15)0.7591 (16)0.5103 (16)0.131 (3)0.56
C13B0.6718 (10)0.8878 (9)0.5325 (7)0.1077 (18)0.56
H1330.69790.98430.51840.129*0.56
H1340.68270.90020.62140.129*0.56
C14B0.7995 (10)0.8369 (8)0.5167 (8)0.0904 (18)0.56
H120.400 (3)0.821 (2)0.454 (2)0.109 (6)*
U11U22U33U12U13U23
O10.0734 (7)0.0694 (7)0.0904 (8)0.0416 (6)0.0252 (6)0.0203 (6)
N10.0945 (10)0.0754 (9)0.0749 (9)0.0552 (8)0.0267 (8)0.0232 (7)
C10.0921 (12)0.0670 (10)0.0862 (12)0.0423 (9)0.0369 (10)0.0232 (8)
C20.0791 (10)0.0624 (9)0.0939 (13)0.0315 (8)0.0337 (9)0.0232 (8)
C30.1121 (15)0.0891 (13)0.1370 (18)0.0530 (12)0.0723 (14)0.0453 (13)
C40.1025 (16)0.1018 (17)0.175 (3)0.0558 (14)0.0705 (17)0.0389 (17)
C50.0930 (15)0.1002 (16)0.161 (3)0.0525 (13)0.0300 (16)0.0244 (17)
C60.1009 (15)0.0993 (16)0.1069 (16)0.0462 (13)0.0078 (13)0.0261 (13)
C70.0812 (11)0.0782 (11)0.0837 (12)0.0311 (9)0.0157 (9)0.0162 (9)
C80.1162 (15)0.1236 (18)0.0698 (12)0.0529 (13)0.0265 (10)0.0182 (11)
C90.1021 (13)0.0907 (13)0.0840 (13)0.0428 (11)0.0335 (11)0.0031 (10)
C100.157 (2)0.0902 (15)0.156 (2)0.0813 (15)0.084 (2)0.0627 (15)
C110.203 (3)0.153 (2)0.135 (2)0.135 (2)0.107 (2)0.0954 (19)
C120.1553 (19)0.1313 (18)0.0756 (12)0.1116 (16)0.0472 (12)0.0407 (11)
C150.0703 (11)0.0884 (14)0.1379 (18)0.0410 (10)0.0376 (11)0.0254 (12)
C160.0615 (9)0.0775 (11)0.1134 (15)0.0298 (8)0.0346 (9)0.0204 (10)
C170.0653 (10)0.0742 (12)0.1411 (18)0.0269 (9)0.0232 (11)0.0170 (11)
C180.0837 (12)0.0872 (14)0.1346 (18)0.0407 (11)0.0354 (12)0.0290 (12)
C190.1060 (15)0.0746 (12)0.1174 (16)0.0322 (11)0.0545 (14)0.0286 (11)
C200.0870 (13)0.0801 (13)0.1029 (15)0.0109 (10)0.0380 (12)0.0208 (11)
C210.0659 (10)0.0980 (14)0.0982 (14)0.0245 (10)0.0316 (10)0.0269 (11)
N2A0.096 (7)0.119 (8)0.122 (5)0.060 (6)0.022 (5)0.029 (5)
C13A0.146 (5)0.111 (6)0.080 (3)0.097 (4)0.048 (2)0.041 (3)
C14A0.086 (5)0.081 (5)0.090 (4)0.042 (4)0.020 (4)0.024 (4)
N2B0.109 (7)0.124 (8)0.146 (6)0.070 (6)0.026 (5)0.011 (5)
C13B0.171 (3)0.120 (5)0.060 (2)0.103 (3)0.032 (3)0.031 (3)
C14B0.090 (5)0.080 (4)0.089 (3)0.046 (3)0.013 (3)0.017 (3)
O1—C151.434 (2)C11—H11A0.9700
O1—N11.4444 (17)C11—H11B0.9700
N1—C121.460 (3)C12—C13A1.395 (9)
N1—C11.502 (2)C12—C13B1.670 (8)
C1—C21.520 (2)C12—H120.97 (2)
C1—C91.528 (3)C15—C161.501 (3)
C1—C101.540 (3)C15—H15A0.9700
C2—C71.369 (3)C15—H15B0.9700
C2—C31.390 (3)C16—C171.384 (3)
C3—C41.378 (3)C16—C211.387 (3)
C3—H30.9300C17—C181.377 (3)
C4—C51.351 (4)C17—H170.9300
C4—H40.9300C18—C191.371 (3)
C5—C61.375 (4)C18—H180.9300
C5—H50.9300C19—C201.364 (3)
C6—C71.396 (3)C19—H190.9300
C6—H60.9300C20—C211.374 (3)
C7—C81.491 (3)C20—H200.9300
C8—C91.529 (3)C21—H210.9300
C8—H8A0.9700N2A—C14A1.553 (17)
C8—H8B0.9700C13A—C14A1.410 (16)
C9—H9A0.9700C13A—H1310.9700
C9—H9B0.9700C13A—H1320.9700
C10—C111.514 (4)N2B—C14B1.021 (17)
C10—H10A0.9700C13B—C14B1.481 (13)
C10—H10B0.9700C13B—H1330.9700
C11—C121.505 (4)C13B—H1340.9700
C15—O1—N1109.50 (12)C10—C11—H11B110.7
O1—N1—C12107.46 (13)H11A—C11—H11B108.8
O1—N1—C1110.06 (12)C13A—C12—N1124.5 (4)
C12—N1—C1106.19 (16)C13A—C12—C11105.6 (4)
N1—C1—C2112.94 (14)N1—C12—C11101.52 (17)
N1—C1—C9111.30 (15)N1—C12—C13B103.0 (3)
C2—C1—C9101.77 (16)C11—C12—C13B122.4 (3)
N1—C1—C10100.66 (17)C13A—C12—H12103.9 (13)
C2—C1—C10115.07 (17)N1—C12—H12107.9 (12)
C9—C1—C10115.58 (17)C11—C12—H12113.9 (13)
C7—C2—C3119.32 (19)C13B—C12—H12106.6 (13)
C7—C2—C1111.24 (17)O1—C15—C16106.64 (14)
C3—C2—C1129.44 (18)O1—C15—H15A110.4
C4—C3—C2119.6 (2)C16—C15—H15A110.4
C4—C3—H3120.2O1—C15—H15B110.4
C2—C3—H3120.2C16—C15—H15B110.4
C5—C4—C3120.8 (3)H15A—C15—H15B108.6
C5—C4—H4119.6C17—C16—C21117.70 (19)
C3—C4—H4119.6C17—C16—C15121.00 (17)
C4—C5—C6120.7 (2)C21—C16—C15121.30 (18)
C4—C5—H5119.6C18—C17—C16120.93 (19)
C6—C5—H5119.6C18—C17—H17119.5
C5—C6—C7118.9 (2)C16—C17—H17119.5
C5—C6—H6120.5C19—C18—C17120.5 (2)
C7—C6—H6120.5C19—C18—H18119.7
C2—C7—C6120.5 (2)C17—C18—H18119.7
C2—C7—C8110.62 (18)C20—C19—C18119.1 (2)
C6—C7—C8128.8 (2)C20—C19—H19120.4
C7—C8—C9103.76 (17)C18—C19—H19120.4
C7—C8—H8A111.0C19—C20—C21120.88 (19)
C9—C8—H8A111.0C19—C20—H20119.6
C7—C8—H8B111.0C21—C20—H20119.6
C9—C8—H8B111.0C20—C21—C16120.8 (2)
H8A—C8—H8B109.0C20—C21—H21119.6
C1—C9—C8106.36 (16)C16—C21—H21119.6
C1—C9—H9A110.5C12—C13A—C14A109.0 (8)
C8—C9—H9A110.5C12—C13A—H131109.9
C1—C9—H9B110.5C14A—C13A—H131109.9
C8—C9—H9B110.5C12—C13A—H132109.9
H9A—C9—H9B108.6C14A—C13A—H132109.9
C11—C10—C1106.99 (19)H131—C13A—H132108.3
C11—C10—H10A110.3C13A—C14A—N2A158.1 (9)
C1—C10—H10A110.3C14B—C13B—C12115.0 (6)
C11—C10—H10B110.3C14B—C13B—H133108.5
C1—C10—H10B110.3C12—C13B—H133108.5
H10A—C10—H10B108.6C14B—C13B—H134108.5
C12—C11—C10105.04 (17)C12—C13B—H134108.5
C12—C11—H11A110.7H133—C13B—H134107.5
C10—C11—H11A110.7N2B—C14B—C13B152.4 (10)
C12—C11—H11B110.7
C15—O1—N1—C12127.02 (18)C2—C1—C10—C11−105.6 (2)
C15—O1—N1—C1−117.76 (16)C9—C1—C10—C11136.2 (2)
O1—N1—C1—C2−31.15 (19)C1—C10—C11—C1210.2 (3)
C12—N1—C1—C284.87 (17)O1—N1—C12—C13A−78.5 (5)
O1—N1—C1—C982.60 (17)C1—N1—C12—C13A163.7 (5)
C12—N1—C1—C9−161.38 (16)O1—N1—C12—C11163.27 (17)
O1—N1—C1—C10−154.38 (14)C1—N1—C12—C1145.5 (2)
C12—N1—C1—C10−38.36 (19)O1—N1—C12—C13B−69.3 (3)
N1—C1—C2—C7102.02 (18)C1—N1—C12—C13B173.0 (3)
C9—C1—C2—C7−17.40 (19)C10—C11—C12—C13A−164.3 (5)
C10—C1—C2—C7−143.16 (19)C10—C11—C12—N1−33.3 (2)
N1—C1—C2—C3−77.2 (2)C10—C11—C12—C13B−146.9 (4)
C9—C1—C2—C3163.37 (19)N1—O1—C15—C16179.41 (14)
C10—C1—C2—C337.6 (3)O1—C15—C16—C17−59.3 (3)
C7—C2—C3—C4−2.2 (3)O1—C15—C16—C21120.56 (19)
C1—C2—C3—C4176.98 (19)C21—C16—C17—C180.3 (3)
C2—C3—C4—C50.1 (4)C15—C16—C17—C18−179.8 (2)
C3—C4—C5—C61.9 (4)C16—C17—C18—C19−0.3 (4)
C4—C5—C6—C7−1.7 (4)C17—C18—C19—C200.0 (4)
C3—C2—C7—C62.4 (3)C18—C19—C20—C210.2 (3)
C1—C2—C7—C6−176.96 (17)C19—C20—C21—C16−0.1 (3)
C3—C2—C7—C8−177.52 (18)C17—C16—C21—C20−0.2 (3)
C1—C2—C7—C83.2 (2)C15—C16—C21—C20−179.98 (18)
C5—C6—C7—C2−0.4 (3)N1—C12—C13A—C14A−49.7 (7)
C5—C6—C7—C8179.4 (2)C11—C12—C13A—C14A66.6 (6)
C2—C7—C8—C912.6 (2)C13B—C12—C13A—C14A−73.4 (17)
C6—C7—C8—C9−167.3 (2)C12—C13A—C14A—N2A105 (3)
N1—C1—C9—C8−96.19 (19)C13A—C12—C13B—C14B93.7 (19)
C2—C1—C9—C824.4 (2)N1—C12—C13B—C14B−66.5 (5)
C10—C1—C9—C8149.8 (2)C11—C12—C13B—C14B46.4 (6)
C7—C8—C9—C1−23.2 (2)C12—C13B—C14B—N2B−51 (3)
N1—C1—C10—C1116.2 (2)
D—H···AD—HH···AD···AD—H···A
C21—H21···N2Bi0.932.613.511 (15)164
C21—H21···N2Ai0.932.483.390 (18)168
C13B—H134···O1ii0.972.873.389 (9)115
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C21—H21⋯N2B i 0.932.613.511 (15)164
C21—H21⋯N2A i 0.932.483.390 (18)168

Symmetry codes: (i) .

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6.  Characterization of H+-ATPase-dependent activity of multidrug resistance-associated protein in homoharringtonine-resistant human leukemic K562 cells.

Authors:  Z Benderra; H Morjani; A Trussardi; M Manfait
Journal:  Leukemia       Date:  1998-10       Impact factor: 11.528

7.  A phase I dose-finding and pharmacokinetic study of subcutaneous semisynthetic homoharringtonine (ssHHT) in patients with advanced acute myeloid leukaemia.

Authors:  V Lévy; S Zohar; C Bardin; A Vekhoff; D Chaoui; B Rio; O Legrand; S Sentenac; P Rousselot; E Raffoux; F Chast; S Chevret; J P Marie
Journal:  Br J Cancer       Date:  2006-07-18       Impact factor: 7.640

  7 in total
  1 in total

1.  Synthesis of 1-Azaspiro[4.4]nonane Derivatives Enabled by Domino Radical Bicyclization Involving Formation and Capture of Alkoxyaminyl Radicals.

Authors:  Alejandro Guerrero-Caicedo; Diana M Soto-Martínez; David A Osorio; Muskendol Novoa; Alix E Loaiza; Luz M Jaramillo-Gómez
Journal:  ACS Omega       Date:  2019-12-04
  1 in total

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