Literature DB >> 24109283

Poly[[μ-bis-(4-nitro-phen-yl) phosphato-κ(2) O,O']sodium].

Aleksandra Gerus1, Tadeusz Lis.   

Abstract

The title compound, [Na(C12H8N2O8P)], consists of one Na(+) cation and one bis-(p-nitro-phen-yl)phosphate anion with a considerable distortion of the phosphate tetra-hedron due to the presence of two P-O ester bonds. The anion bridges five Na(+) cations whereby each cation is chelated by the nitro O atoms of one anion and bonded via a nitro O atom and phosphate O atoms to four other anions. This bridging arrangement leads to the formation of double layers parallel to (001). Adjacent layers are linked through weak C-H⋯O hydrogen bonds.

Entities:  

Year:  2013        PMID: 24109283      PMCID: PMC3793696          DOI: 10.1107/S1600536813019260

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For hydrolytic cleavage of the phospho­diester bond in bis­(p-nitro­phen­yl)phosphate (BNPP) and related systems, see: Belousoff et al. (2009 ▶); Branum et al. (2001 ▶); Chang et al. (2009 ▶); Liu et al. (2004 ▶); Mancin et al. (2005 ▶); Oh et al. (1996 ▶); Sredhera & Cowan (2001 ▶). For crystal structures containing the BNPP entity, see: Bazzicalupi et al. (2004 ▶); Bond et al. (1985 ▶); Fry et al. (2003 ▶); Jurek & Martell (1999 ▶); Král et al. (2006 ▶); Pletcher et al. (1972 ▶); Sax et al. (1970 ▶, 1971 ▶); Warden et al. (2005 ▶); Yoo et al. (1975 ▶).

Experimental

Crystal data

[Na(C12H8N2O8P)] M = 362.16 Triclinic, a = 6.963 (2) Å b = 9.844 (3) Å c = 11.213 (3) Å α = 103.93 (3)° β = 105.83 (3)° γ = 106.38 (3)° V = 666.1 (3) Å3 Z = 2 Mo Kα radiation μ = 0.29 mm−1 T = 100 K 0.30 × 0.27 × 0.25 mm

Data collection

Agilent Xcalibur (Onyx with CCD camera) diffractometer Absorption correction: analytical (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.918, T max = 0.931 13418 measured reflections 6748 independent reflections 5542 reflections with I > 2σ(I) R int = 0.014

Refinement

R[F 2 > 2σ(F 2)] = 0.030 wR(F 2) = 0.090 S = 1.07 6748 reflections 217 parameters H-atom parameters constrained Δρmax = 0.66 e Å−3 Δρmin = −0.33 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813019260/wm2751sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813019260/wm2751Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Na(C12H8N2O8P)]Z = 2
Mr = 362.16F(000) = 368
Triclinic, P1Dx = 1.806 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.963 (2) ÅCell parameters from 8925 reflections
b = 9.844 (3) Åθ = 3.2–37.5°
c = 11.213 (3) ŵ = 0.29 mm1
α = 103.93 (3)°T = 100 K
β = 105.83 (3)°Block, yellow
γ = 106.38 (3)°0.30 × 0.27 × 0.25 mm
V = 666.1 (3) Å3
Agilent Xcalibur (Onyx with CCD camera) diffractometer6748 independent reflections
Radiation source: fine-focus sealed tube5542 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.014
ω and π scansθmax = 37.6°, θmin = 3.2°
Absorption correction: analytical (CrysAlis PRO; Agilent, 2011)h = −11→10
Tmin = 0.918, Tmax = 0.931k = −16→15
13418 measured reflectionsl = −19→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.030Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0486P)2 + 0.1337P] where P = (Fo2 + 2Fc2)/3
6748 reflections(Δ/σ)max = 0.001
217 parametersΔρmax = 0.66 e Å3
0 restraintsΔρmin = −0.33 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
P10.19163 (3)0.36887 (2)0.291283 (19)0.00783 (4)
O10.52988 (11)1.11256 (7)0.18582 (7)0.01642 (12)
O20.66594 (11)1.15233 (7)0.39510 (6)0.01488 (11)
O3−0.28509 (13)−0.46498 (7)0.15506 (8)0.02195 (14)
O4−0.14079 (12)−0.34783 (8)0.36644 (7)0.01817 (13)
O110.18884 (10)0.45097 (6)0.18143 (6)0.01210 (10)
O210.02554 (10)0.20680 (6)0.18007 (6)0.01107 (10)
O310.40483 (10)0.36277 (7)0.34892 (6)0.01340 (11)
O410.08681 (9)0.42769 (7)0.37940 (6)0.01131 (10)
N10.55665 (11)1.06716 (8)0.27967 (7)0.01084 (11)
N2−0.18533 (12)−0.34891 (8)0.25185 (8)0.01290 (12)
C10.28334 (12)0.60309 (8)0.21207 (7)0.00932 (12)
C20.24915 (13)0.65553 (9)0.10570 (8)0.01132 (12)
H20.16540.58620.01870.014*
C30.33698 (13)0.80825 (9)0.12681 (8)0.01110 (12)
H30.31440.84480.05510.013*
C40.45900 (12)0.90670 (8)0.25538 (8)0.00970 (12)
C50.49639 (13)0.85587 (9)0.36171 (8)0.01053 (12)
H50.58150.92550.44840.013*
C60.40903 (13)0.70311 (9)0.34079 (8)0.01043 (12)
H60.43410.66690.41260.013*
C11−0.01420 (12)0.07325 (8)0.20306 (8)0.00914 (11)
C21−0.14071 (13)−0.05705 (9)0.09256 (8)0.01090 (12)
H21−0.1902−0.04920.00770.013*
C31−0.19405 (13)−0.19754 (9)0.10643 (8)0.01187 (13)
H31−0.2790−0.28670.03200.014*
C41−0.11984 (13)−0.20435 (9)0.23230 (8)0.01057 (12)
C510.00777 (13)−0.07667 (9)0.34263 (8)0.01163 (13)
H510.0579−0.08540.42710.014*
C610.06168 (13)0.06395 (9)0.32862 (8)0.01120 (12)
H610.14890.15260.40330.013*
Na0.75570 (5)1.41177 (4)0.39243 (3)0.01082 (7)
U11U22U33U12U13U23
P10.00772 (8)0.00661 (8)0.00894 (8)0.00226 (6)0.00311 (6)0.00274 (6)
O10.0212 (3)0.0124 (3)0.0172 (3)0.0056 (2)0.0065 (2)0.0091 (2)
O20.0167 (3)0.0091 (2)0.0144 (3)0.0027 (2)0.0032 (2)0.0020 (2)
O30.0321 (4)0.0079 (3)0.0231 (3)0.0030 (3)0.0129 (3)0.0025 (2)
O40.0225 (3)0.0154 (3)0.0206 (3)0.0075 (2)0.0087 (3)0.0116 (2)
O110.0172 (3)0.0066 (2)0.0100 (2)0.00113 (19)0.0046 (2)0.00292 (18)
O210.0137 (2)0.0062 (2)0.0103 (2)0.00136 (19)0.00201 (19)0.00335 (18)
O310.0084 (2)0.0132 (3)0.0176 (3)0.0045 (2)0.0038 (2)0.0042 (2)
O410.0108 (2)0.0121 (2)0.0121 (2)0.00466 (19)0.00572 (19)0.00352 (19)
N10.0107 (3)0.0084 (3)0.0147 (3)0.0041 (2)0.0052 (2)0.0049 (2)
N20.0142 (3)0.0093 (3)0.0190 (3)0.0054 (2)0.0094 (2)0.0063 (2)
C10.0102 (3)0.0068 (3)0.0107 (3)0.0024 (2)0.0041 (2)0.0031 (2)
C20.0127 (3)0.0092 (3)0.0100 (3)0.0020 (2)0.0031 (2)0.0035 (2)
C30.0123 (3)0.0092 (3)0.0111 (3)0.0031 (2)0.0036 (2)0.0044 (2)
C40.0101 (3)0.0072 (3)0.0122 (3)0.0031 (2)0.0044 (2)0.0038 (2)
C50.0119 (3)0.0078 (3)0.0106 (3)0.0031 (2)0.0035 (2)0.0025 (2)
C60.0123 (3)0.0086 (3)0.0097 (3)0.0031 (2)0.0037 (2)0.0035 (2)
C110.0094 (3)0.0073 (3)0.0110 (3)0.0029 (2)0.0039 (2)0.0036 (2)
C210.0126 (3)0.0084 (3)0.0101 (3)0.0025 (2)0.0036 (2)0.0028 (2)
C310.0136 (3)0.0082 (3)0.0124 (3)0.0025 (2)0.0054 (3)0.0024 (2)
C410.0121 (3)0.0074 (3)0.0142 (3)0.0040 (2)0.0068 (2)0.0046 (2)
C510.0130 (3)0.0104 (3)0.0118 (3)0.0040 (2)0.0040 (2)0.0053 (2)
C610.0130 (3)0.0086 (3)0.0099 (3)0.0024 (2)0.0027 (2)0.0031 (2)
Na0.00911 (14)0.00915 (14)0.01433 (15)0.00301 (11)0.00447 (12)0.00451 (12)
P1—O311.4733 (8)C2—C31.3861 (12)
P1—O411.4834 (7)C2—H20.9500
P1—O111.6266 (8)C3—C41.3908 (14)
P1—O211.6287 (12)C3—H30.9500
O1—N11.2282 (10)C4—C51.3895 (12)
O1—Na2.9377 (18)C5—C61.3867 (12)
O2—N11.2399 (12)C5—H50.9500
O2—Na2.4618 (11)C6—H60.9500
O3—N21.2288 (12)C11—C611.3976 (12)
O4—N21.2335 (11)C11—C211.3995 (14)
O4—Nai2.3853 (11)C21—C311.3857 (12)
O11—C11.3663 (11)C21—H210.9500
O21—C111.3668 (10)C31—C411.3894 (12)
O31—Naii2.2386 (10)C31—H310.9500
O41—Naiii2.3135 (9)C41—C511.3862 (14)
O41—Naiv2.4065 (14)C51—C611.3877 (12)
N1—C41.4552 (12)C51—H510.9500
N2—C411.4560 (12)C61—H610.9500
C1—C21.3987 (12)Na—Nav3.253 (2)
C1—C61.3998 (14)
O31—P1—O41119.67 (5)C1—C6—H6120.6
O31—P1—O11110.86 (4)O21—C11—C61123.21 (8)
O41—P1—O11110.02 (4)O21—C11—C21116.04 (7)
O31—P1—O21110.48 (5)C61—C11—C21120.74 (8)
O41—P1—O21110.21 (4)C31—C21—C11120.28 (8)
O11—P1—O2192.20 (4)C31—C21—H21119.9
N1—O1—Na83.76 (6)C11—C21—H21119.9
N1—O2—Na106.72 (6)C21—C31—C41118.15 (8)
N2—O4—Nai116.10 (7)C21—C31—H31120.9
C1—O11—P1123.69 (6)C41—C31—H31120.9
C11—O21—P1123.67 (6)C51—C41—C31122.37 (8)
P1—O31—Naii157.93 (4)C51—C41—N2117.95 (8)
P1—O41—Naiii143.20 (5)C31—C41—N2119.61 (8)
P1—O41—Naiv129.49 (4)C41—C51—C61119.45 (8)
Naiii—O41—Naiv87.11 (4)C41—C51—H51120.3
O1—N1—O2122.74 (7)C61—C51—H51120.3
O1—N1—C4119.12 (8)C51—C61—C11119.01 (8)
O2—N1—C4118.13 (8)C51—C61—H61120.5
O1—N1—Na72.71 (6)C11—C61—H61120.5
O2—N1—Na50.43 (5)O31vi—Na—O41vii165.08 (3)
C4—N1—Na167.00 (5)O31vi—Na—O4viii99.55 (4)
O3—N2—O4123.14 (8)O41vii—Na—O4viii81.55 (4)
O3—N2—C41119.25 (8)O31vi—Na—O41iv101.98 (5)
O4—N2—C41117.59 (8)O41vii—Na—O41iv92.89 (4)
O11—C1—C2115.91 (8)O4viii—Na—O41iv80.28 (4)
O11—C1—C6123.34 (8)O31vi—Na—O284.38 (4)
C2—C1—C6120.75 (7)O41vii—Na—O292.94 (4)
C3—C2—C1120.25 (8)O4viii—Na—O2172.26 (3)
C3—C2—H2119.9O41iv—Na—O2105.55 (4)
C1—C2—H2119.9O31vi—Na—O174.29 (5)
C2—C3—C4118.44 (8)O41vii—Na—O193.25 (4)
C2—C3—H3120.8O4viii—Na—O1128.23 (3)
C4—C3—H3120.8O41iv—Na—O1151.44 (3)
C5—C4—C3121.88 (8)O2—Na—O146.28 (3)
C5—C4—N1118.65 (8)O31vi—Na—N176.99 (4)
C3—C4—N1119.43 (8)O41vii—Na—N194.92 (4)
C6—C5—C4119.77 (8)O4viii—Na—N1151.70 (3)
C6—C5—H5120.1O41iv—Na—N1128.02 (4)
C4—C5—H5120.1O2—Na—N122.85 (2)
C5—C6—C1118.90 (8)O1—Na—N123.53 (2)
C5—C6—H6120.6
O31—P1—O11—C1−74.91 (8)C4—C5—C6—C1−0.33 (12)
O41—P1—O11—C159.73 (8)O11—C1—C6—C5−179.42 (7)
O21—P1—O11—C1172.18 (6)C2—C1—C6—C51.12 (12)
O31—P1—O21—C1153.96 (7)P1—O21—C11—C618.66 (11)
O41—P1—O21—C11−80.51 (7)P1—O21—C11—C21−172.40 (6)
O11—P1—O21—C11167.21 (6)O21—C11—C21—C31−178.45 (7)
P1—O11—C1—C2−174.63 (6)C61—C11—C21—C310.52 (12)
P1—O11—C1—C65.90 (11)C11—C21—C31—C410.45 (12)
O11—C1—C2—C3179.50 (7)C21—C31—C41—C51−1.26 (12)
C6—C1—C2—C3−1.01 (12)C21—C31—C41—N2175.67 (7)
C1—C2—C3—C40.09 (12)O3—N2—C41—C51−174.72 (8)
C2—C3—C4—C50.72 (12)O4—N2—C41—C516.77 (11)
C2—C3—C4—N1178.70 (7)O3—N2—C41—C318.22 (12)
O1—N1—C4—C5177.82 (7)O4—N2—C41—C31−170.30 (8)
O2—N1—C4—C5−1.43 (11)C31—C41—C51—C611.08 (12)
O1—N1—C4—C3−0.23 (11)N2—C41—C51—C61−175.90 (7)
O2—N1—C4—C3−179.48 (7)C41—C51—C61—C11−0.07 (12)
C3—C4—C5—C6−0.60 (12)O21—C11—C61—C51178.18 (7)
N1—C4—C5—C6−178.60 (7)C21—C11—C61—C51−0.71 (12)
D—H···AD—HH···AD···AD—H···A
C2—H2···O3ix0.952.503.1865 (15)129
C21—H21···O1x0.952.533.3337 (18)142
P1—O311.4733 (8)
P1—O411.4834 (7)
P1—O111.6266 (8)
P1—O211.6287 (12)
O1—Na2.9377 (18)
O2—Na2.4618 (11)
O4—Nai 2.3853 (11)
O31—Naii 2.2386 (10)
O41—Naiii 2.3135 (9)
O41—Naiv 2.4065 (14)
O31—P1—O41119.67 (5)
O31—P1—O11110.86 (4)
O41—P1—O11110.02 (4)
O31—P1—O21110.48 (5)
O41—P1—O21110.21 (4)
O11—P1—O2192.20 (4)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
C2—H2⋯O3v 0.952.503.1865 (15)129
C21—H21⋯O1vi 0.952.533.3337 (18)142

Symmetry codes: (v) ; (vi) .

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