Literature DB >> 24109277

Di-aqua-bis-(pyridine-2-carboxyl-ato-κ(2) N,O)zinc di-methyl-formamide hemisolvate.

Lilia Croitor1, Diana Chisca, Eduard B Coropceanu, Marina S Fonari.   

Abstract

In the title compound, [Zn(C6H4NO2)2(H2O)2]·0.5C3H7NO, the Zn(II) ion is coordinated in a distorted octa-hedral N2O4 environment by two N,O-chelating pyridine-2-carboxyl-ate ligands and two cis water mol-ecules. The chelating pyridine-2-carboxyl-ate ligands create two five-membered Zn/N/C/C/O rings, which form a dihedral angle of 86.4 (2)°. In the crystal, O-H⋯O hydrogen bonds link the complex mol-ecules into a two-dimensional network parallel to (100). The di-methyl-formamide solvent mol-ecule is disordered about a twofold rotation axis.

Entities:  

Year:  2013        PMID: 24109277      PMCID: PMC3793690          DOI: 10.1107/S1600536813018941

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to polydentate ligands, see: Udvardy et al. (2013 ▶); Groni et al. (2008 ▶); Golenya et al. (2011 ▶); Ma et al. (2009 ▶). For related structures, see: Chen & Hu (2011 ▶); Li et al. (2008 ▶); Lumme et al. (1969 ▶); Takenaka et al. (1970 ▶); Uggla et al. (1969 ▶). For hydrogen-bond graph-set motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

[Zn(C6H4NO2)2(H2O)2]·0.5C3H7NO M = 382.16 Monoclinic, a = 25.777 (3) Å b = 8.6754 (4) Å c = 16.7916 (17) Å β = 125.228 (15)° V = 3067.4 (5) Å3 Z = 8 Mo Kα radiation μ = 1.64 mm−1 T = 293 K 0.18 × 0.12 × 0.02 mm

Data collection

Agilent Xcalibur Eos diffractometer Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011 ▶) T min = 0.906, T max = 1.000 4865 measured reflections 2844 independent reflections 1772 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.062 wR(F 2) = 0.114 S = 1.00 2844 reflections 244 parameters 162 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.47 e Å−3 Δρmin = −0.44 e Å−3 Data collection: CrysAlis PRO (Agilent, 2011 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablock(s) I, New_Global_Publ_Block. DOI: 10.1107/S1600536813018941/lh5630sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813018941/lh5630Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Zn(C6H4NO2)2(H2O)2]·0.5C3H7NOF(000) = 1568
Mr = 382.16Dx = 1.655 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 957 reflections
a = 25.777 (3) Åθ = 3.0–28.9°
b = 8.6754 (4) ŵ = 1.64 mm1
c = 16.7916 (17) ÅT = 293 K
β = 125.228 (15)°Prism, colourless
V = 3067.4 (5) Å30.18 × 0.12 × 0.02 mm
Z = 8
Agilent Xcalibur Eos diffractometer2844 independent reflections
Radiation source: Enhance (Mo) X-ray Source1772 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.055
Detector resolution: 15.9914 pixels mm-1θmax = 25.5°, θmin = 3.0°
ω scansh = −31→25
Absorption correction: multi-scan (CrysAlis PRO; Agilent, 2011)k = −10→5
Tmin = 0.906, Tmax = 1.000l = −9→20
4865 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.062Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H atoms treated by a mixture of independent and constrained refinement
S = 1.00w = 1/[σ2(Fo2) + (0.025P)2] where P = (Fo2 + 2Fc2)/3
2844 reflections(Δ/σ)max = 0.001
244 parametersΔρmax = 0.47 e Å3
162 restraintsΔρmin = −0.44 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Zn10.18837 (3)0.40000 (7)0.78138 (4)0.0278 (2)
N10.18028 (19)0.6106 (5)0.8391 (3)0.0273 (11)
N20.08845 (19)0.3806 (5)0.6684 (3)0.0253 (10)
O10.17673 (17)0.3193 (4)0.8877 (2)0.0338 (10)
O20.17327 (17)0.3959 (4)1.0115 (2)0.0367 (10)
O30.18125 (17)0.1902 (4)0.7129 (3)0.0335 (10)
O40.11570 (19)0.0343 (5)0.5895 (3)0.0555 (13)
C10.1798 (3)0.7558 (6)0.8114 (4)0.0396 (16)
H10.18370.77220.76030.048*
C20.1738 (3)0.8813 (6)0.8553 (4)0.0433 (16)
H20.17390.98080.83470.052*
C30.1677 (3)0.8573 (7)0.9300 (4)0.0441 (17)
H30.16330.94050.96060.053*
C40.1681 (2)0.7106 (6)0.9593 (4)0.0336 (14)
H40.16460.69311.01070.040*
C50.1738 (2)0.5873 (6)0.9120 (3)0.0256 (13)
C60.1751 (2)0.4195 (6)0.9396 (4)0.0279 (13)
C70.0422 (3)0.4729 (6)0.6531 (4)0.0364 (15)
H70.05290.55980.69210.044*
C8−0.0215 (3)0.4441 (7)0.5811 (4)0.0461 (17)
H8−0.05290.50860.57350.055*
C9−0.0372 (3)0.3196 (7)0.5217 (4)0.0428 (16)
H9−0.07940.29900.47170.051*
C100.0109 (3)0.2248 (7)0.5376 (4)0.0376 (15)
H100.00140.13930.49800.045*
C110.0729 (3)0.2570 (6)0.6122 (4)0.0268 (13)
C120.1270 (3)0.1516 (6)0.6384 (4)0.0326 (14)
O1W0.28549 (18)0.3692 (5)0.8823 (3)0.0389 (10)
H1W10.3148 (18)0.425 (5)0.888 (4)0.05 (2)*
H2W10.298 (2)0.296 (4)0.924 (3)0.042 (19)*
O2W0.2112 (2)0.5202 (5)0.6968 (3)0.0413 (11)
H1W20.199 (2)0.512 (5)0.6369 (16)0.031 (16)*
H2W20.2454 (17)0.575 (6)0.732 (3)0.05 (2)*
O1X0.9935 (9)0.7274 (12)0.7077 (8)0.142 (8)0.50
N1X0.9961 (14)0.9688 (8)0.7567 (15)0.065 (4)0.50
C1X0.9916 (9)0.8645 (13)0.6968 (9)0.093 (8)0.50
H1X0.98650.89990.64040.112*0.50
C2X1.0023 (11)0.9255 (17)0.8428 (12)0.090 (7)0.50
H2XA0.96110.92290.83070.135*0.50
H2XB1.02860.99900.89330.135*0.50
H2XC1.02140.82520.86290.135*0.50
C3X0.996 (3)1.1310 (9)0.739 (3)0.194 (10)0.50
H3XA1.03851.16730.77150.292*0.50
H3XB0.97501.18540.76310.292*0.50
H3XC0.97311.14860.67000.292*0.50
U11U22U33U12U13U23
Zn10.0328 (4)0.0260 (4)0.0265 (4)−0.0006 (3)0.0182 (3)−0.0013 (3)
N10.034 (3)0.026 (2)0.026 (2)0.001 (2)0.020 (2)0.002 (2)
N20.024 (3)0.024 (3)0.028 (3)0.001 (2)0.015 (2)0.000 (2)
O10.045 (3)0.027 (2)0.032 (2)−0.002 (2)0.024 (2)−0.0019 (18)
O20.046 (3)0.041 (2)0.032 (2)0.005 (2)0.027 (2)0.0093 (19)
O30.024 (2)0.033 (2)0.034 (2)0.0005 (19)0.011 (2)−0.0076 (19)
O40.039 (3)0.047 (3)0.065 (3)0.000 (2)0.022 (3)−0.030 (2)
C10.057 (5)0.029 (3)0.038 (4)−0.006 (3)0.030 (4)0.004 (3)
C20.053 (4)0.022 (3)0.053 (4)−0.008 (3)0.030 (4)−0.006 (3)
C30.053 (5)0.032 (4)0.049 (4)0.003 (3)0.030 (4)−0.011 (3)
C40.039 (4)0.037 (4)0.031 (3)−0.002 (3)0.024 (3)−0.003 (3)
C50.019 (3)0.029 (3)0.020 (3)−0.001 (3)0.006 (3)−0.006 (3)
C60.021 (3)0.030 (3)0.027 (3)0.000 (3)0.010 (3)0.005 (3)
C70.039 (4)0.028 (3)0.041 (4)0.008 (3)0.023 (3)−0.001 (3)
C80.036 (4)0.045 (4)0.062 (5)0.019 (3)0.031 (4)0.013 (3)
C90.026 (4)0.050 (4)0.046 (4)0.001 (3)0.017 (3)0.001 (4)
C100.029 (4)0.036 (4)0.038 (4)−0.005 (3)0.013 (3)−0.010 (3)
C110.032 (3)0.024 (3)0.031 (3)−0.002 (3)0.021 (3)0.001 (3)
C120.037 (4)0.025 (3)0.040 (4)0.005 (3)0.025 (3)0.003 (3)
O1W0.030 (3)0.032 (3)0.041 (3)−0.005 (2)0.013 (2)0.012 (2)
O2W0.049 (3)0.049 (3)0.026 (2)−0.020 (2)0.022 (2)−0.005 (2)
O1X0.117 (11)0.095 (9)0.19 (2)0.029 (11)0.074 (17)−0.078 (9)
N1X0.123 (11)0.043 (6)0.074 (8)0.023 (15)0.082 (8)0.005 (13)
C1X0.072 (14)0.13 (2)0.071 (16)0.034 (17)0.040 (14)−0.035 (15)
C2X0.132 (18)0.084 (15)0.072 (14)0.015 (12)0.069 (14)0.015 (10)
C3X0.45 (3)0.055 (9)0.26 (2)0.02 (5)0.31 (3)0.03 (3)
Zn1—O1W2.078 (4)C7—H70.9300
Zn1—O12.094 (3)C8—C91.363 (7)
Zn1—O2W2.101 (4)C8—H80.9300
Zn1—O32.104 (3)C9—C101.379 (7)
Zn1—N12.134 (4)C9—H90.9300
Zn1—N22.150 (4)C10—C111.375 (7)
N1—C11.341 (6)C10—H100.9300
N1—C51.343 (6)C11—C121.506 (7)
N2—C111.329 (6)O1W—H1W10.857 (18)
N2—C71.333 (6)O1W—H2W10.857 (18)
O1—C61.249 (6)O2W—H1W20.863 (18)
O2—C61.251 (6)O2W—H2W20.866 (19)
O3—C121.271 (6)O1X—C1X1.1999
O4—C121.233 (6)N1X—C1X1.3069
C1—C21.373 (7)N1X—C2X1.4118
C1—H10.9300N1X—C3X1.4373
C2—C31.368 (7)C1X—H1X0.9300
C2—H20.9300C2X—H2XA0.9600
C3—C41.362 (7)C2X—H2XB0.9600
C3—H30.9300C2X—H2XC0.9600
C4—C51.390 (7)C3X—H3XA0.9600
C4—H40.9300C3X—H3XB0.9600
C5—C61.523 (7)C3X—H3XC0.9600
C7—C81.389 (7)
O1W—Zn1—O187.68 (16)N1—C5—C6115.4 (4)
O1W—Zn1—O2W86.53 (18)C4—C5—C6123.6 (5)
O1—Zn1—O2W167.39 (15)O1—C6—O2126.5 (5)
O1W—Zn1—O391.07 (15)O1—C6—C5117.2 (5)
O1—Zn1—O399.57 (14)O2—C6—C5116.3 (5)
O2W—Zn1—O391.74 (16)N2—C7—C8122.5 (5)
O1W—Zn1—N197.31 (16)N2—C7—H7118.8
O1—Zn1—N178.44 (15)C8—C7—H7118.8
O2W—Zn1—N191.19 (17)C9—C8—C7118.9 (5)
O3—Zn1—N1171.28 (15)C9—C8—H8120.6
O1W—Zn1—N2167.46 (16)C7—C8—H8120.6
O1—Zn1—N292.17 (15)C8—C9—C10118.4 (6)
O2W—Zn1—N295.90 (16)C8—C9—H9120.8
O3—Zn1—N276.58 (15)C10—C9—H9120.8
N1—Zn1—N294.94 (16)C11—C10—C9119.9 (5)
C1—N1—C5118.5 (5)C11—C10—H10120.1
C1—N1—Zn1129.1 (4)C9—C10—H10120.1
C5—N1—Zn1112.4 (3)N2—C11—C10121.8 (5)
C11—N2—C7118.5 (5)N2—C11—C12115.7 (5)
C11—N2—Zn1114.0 (4)C10—C11—C12122.5 (5)
C7—N2—Zn1127.4 (4)O4—C12—O3125.2 (5)
C6—O1—Zn1116.2 (3)O4—C12—C11118.9 (5)
C12—O3—Zn1117.7 (3)O3—C12—C11115.9 (5)
N1—C1—C2122.7 (5)Zn1—O1W—H1W1126 (3)
N1—C1—H1118.7Zn1—O1W—H2W1118 (3)
C2—C1—H1118.7H1W1—O1W—H2W1116 (3)
C3—C2—C1118.7 (5)Zn1—O2W—H1W2133 (3)
C3—C2—H2120.6Zn1—O2W—H2W2113 (3)
C1—C2—H2120.6H1W2—O2W—H2W2113 (3)
C4—C3—C2119.5 (5)C1X—N1X—C2X120.7
C4—C3—H3120.3C1X—N1X—C3X122.1
C2—C3—H3120.3C2X—N1X—C3X117.2
C3—C4—C5119.7 (5)O1X—C1X—N1X126.3
C3—C4—H4120.2O1X—C1X—H1X116.9
C5—C4—H4120.2N1X—C1X—H1X116.9
N1—C5—C4121.0 (5)
D—H···AD—HH···AD···AD—H···A
O1W—H1W1···O4i0.86 (2)1.86 (2)2.715 (6)174 (5)
O1W—H2W1···O2ii0.86 (2)1.89 (2)2.723 (5)163 (5)
O2W—H1W2···O2iii0.86 (2)1.98 (3)2.768 (5)152 (4)
O2W—H2W2···O3i0.87 (2)1.85 (2)2.704 (5)170 (4)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1W—H1W1⋯O4i 0.86 (2)1.86 (2)2.715 (6)174 (5)
O1W—H2W1⋯O2ii 0.86 (2)1.89 (2)2.723 (5)163 (5)
O2W—H1W2⋯O2iii 0.86 (2)1.98 (3)2.768 (5)152 (4)
O2W—H2W2⋯O3i 0.87 (2)1.85 (2)2.704 (5)170 (4)

Symmetry codes: (i) ; (ii) ; (iii) .

  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Diaqua-bis(picolinato N-oxide-κO,O')zinc(II).

Authors:  Xiu-Bing Li; Run-Ling Shang; Bai-Wang Sun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-06

3.  In Situ Synthesis, Crystal Structure and Fluorescence of Zn(C5H4NCO2H)2(H2O)2 • 2Cl.

Authors:  Wen-Tong Chen; Long Hu
Journal:  Acta Chim Slov       Date:  2011-03       Impact factor: 1.735

4.  Reactivity of an aminopyridine [LMnII]2+ complex with H2O2. Detection of intermediates at low temperature.

Authors:  Sihem Groni; Pierre Dorlet; Guillaume Blain; Sophie Bourcier; Régis Guillot; Elodie Anxolabéhère-Mallart
Journal:  Inorg Chem       Date:  2008-04-21       Impact factor: 5.165

5.  Diaqua-bis-(pyridine-2-carboxyl-ato-κN,O)manganese(II) dimethyl-formamide hemisolvate.

Authors:  Irina A Golenya; Alexander N Boyko; Valentina A Kalibabchuk; Matti Haukka; Stefania V Tomyn
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-22
  5 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.