Literature DB >> 24101516

Identification and grafting of a unique peptide-binding site in the Fab framework of monoclonal antibodies.

Joshua M Donaldson1, Cindy Zer, Kendra N Avery, Krzysztof P Bzymek, David A Horne, John C Williams.   

Abstract

Capitalizing on their extraordinary specificity, monoclonal antibodies (mAbs) have become one of the most reengineered classes of biological molecules. A major goal in many of these engineering efforts is to add new functionality to the parental mAb, including the addition of cytotoxins and imaging agents for medical applications. Herein, we present a unique peptide-binding site within the central cavity of the fragment antigen binding framework region of the chimeric, anti-epidermal growth factor receptor mAb cetuximab. We demonstrate through diffraction methods, biophysical studies, and sequence analysis that this peptide, a meditope, has moderate affinity for the Fab, is specific to cetuximab (i.e., does not bind to human IgGs), and has no significant effect on antigen binding. We further demonstrate by diffraction studies and biophysical methods that the meditope binding site can be grafted onto the anti-human epidermal growth factor receptor 2 mAb trastuzumab, and that the antigen binding affinity of the grafted trastuzumab is indistinguishable from the parental mAb. Finally, we demonstrate a bivalent meditope variant binds specifically and stably to antigen-bearing cells only in the presence of the meditope-enabled mAbs. Collectively, this finding and the subsequent characterization and engineering efforts indicate that this unique interface could serve as a noncovalent "linker" for any meditope-enabled mAb with applications in multiple mAb-based technologies including diagnostics, imaging, and therapeutic delivery.

Entities:  

Keywords:  cancer; molecular recognition; protein engineering

Mesh:

Substances:

Year:  2013        PMID: 24101516      PMCID: PMC3808661          DOI: 10.1073/pnas.1307309110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

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Authors:  Angel M Cuesta; David Sánchez-Martín; Ana Blanco-Toribio; Maider Villate; Kelly Enciso-Álvarez; Ana Alvarez-Cienfuegos; Noelia Sainz-Pastor; Laura Sanz; Francisco J Blanco; Luis Alvarez-Vallina
Journal:  MAbs       Date:  2012-03-01       Impact factor: 5.857

Review 2.  Development trends for human monoclonal antibody therapeutics.

Authors:  Aaron L Nelson; Eugen Dhimolea; Janice M Reichert
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Journal:  Nucl Med Biol       Date:  2008-02       Impact factor: 2.408

4.  Staphylococcal protein A binding to the Fab fragments of mouse monoclonal antibodies.

Authors:  W W Young; Y Tamura; D M Wolock; J W Fox
Journal:  J Immunol       Date:  1984-12       Impact factor: 5.422

5.  Engineering an antibody with picomolar affinity to DOTA chelates of multiple radionuclides for pretargeted radioimmunotherapy and imaging.

Authors:  Kelly Davis Orcutt; Adrian L Slusarczyk; Maryelise Cieslewicz; Benjamin Ruiz-Yi; Kumar R Bhushan; John V Frangioni; K Dane Wittrup
Journal:  Nucl Med Biol       Date:  2010-10-27       Impact factor: 2.408

6.  Complex between Peptostreptococcus magnus protein L and a human antibody reveals structural convergence in the interaction modes of Fab binding proteins.

Authors:  M Graille; E A Stura; N G Housden; J A Beckingham; S P Bottomley; D Beale; M J Taussig; B J Sutton; M G Gore; J B Charbonnier
Journal:  Structure       Date:  2001-08       Impact factor: 5.006

7.  Structure of the extracellular region of HER2 alone and in complex with the Herceptin Fab.

Authors:  Hyun-Soo Cho; Karen Mason; Kasra X Ramyar; Ann Marie Stanley; Sandra B Gabelli; Dan W Denney; Daniel J Leahy
Journal:  Nature       Date:  2003-02-13       Impact factor: 49.962

8.  Kinetics of interaction between ADP-ribosylation factor-1 (Arf1) and the Sec7 domain of Arno guanine nucleotide exchange factor, modulation by allosteric factors, and the uncompetitive inhibitor brefeldin A.

Authors:  Jad Rouhana; André Padilla; Sébastien Estaran; Sana Bakari; Stephan Delbecq; Yvan Boublik; Joel Chopineau; Martine Pugnière; Alain Chavanieu
Journal:  J Biol Chem       Date:  2012-12-19       Impact factor: 5.157

9.  Recombinant immunotoxin against B-cell malignancies with no immunogenicity in mice by removal of B-cell epitopes.

Authors:  Masanori Onda; Richard Beers; Laiman Xiang; Byungkook Lee; John E Weldon; Robert J Kreitman; Ira Pastan
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-21       Impact factor: 12.779

10.  Pretargeted molecular imaging and radioimmunotherapy.

Authors:  David M Goldenberg; Chien-Hsing Chang; Edmund A Rossi; William J; Robert M Sharkey
Journal:  Theranostics       Date:  2012-05-17       Impact factor: 11.556

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  24 in total

1.  Refining the Quality of Monoclonal Antibodies: Grafting Unique Peptide-Binding Site in the Fab Framework.

Authors:  Jeremy D King; John C Williams
Journal:  Methods Mol Biol       Date:  2019

Review 2.  Non-covalent albumin-binding ligands for extending the circulating half-life of small biotherapeutics.

Authors:  Alessandro Zorzi; Sara Linciano; Alessandro Angelini
Journal:  Medchemcomm       Date:  2019-06-06       Impact factor: 3.597

3.  Engineering a high-affinity peptide binding site into the anti-CEA mAb M5A.

Authors:  Cindy Zer; Kendra N Avery; Kassondra Meyer; Leah Goodstein; Krzysztof P Bzymek; Gagandeep Singh; John C Williams
Journal:  Protein Eng Des Sel       Date:  2017-06-01       Impact factor: 1.650

4.  Mutational landscape of antibody variable domains reveals a switch modulating the interdomain conformational dynamics and antigen binding.

Authors:  Patrick Koenig; Chingwei V Lee; Benjamin T Walters; Vasantharajan Janakiraman; Jeremy Stinson; Thomas W Patapoff; Germaine Fuh
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-05       Impact factor: 11.205

5.  Activating mutations of STAT5B and STAT3 in lymphomas derived from γδ-T or NK cells.

Authors:  Can Küçük; Bei Jiang; Xiaozhou Hu; Wenyan Zhang; John K C Chan; Wenming Xiao; Nathan Lack; Can Alkan; John C Williams; Kendra N Avery; Pınar Kavak; Anna Scuto; Emel Sen; Philippe Gaulard; Lou Staudt; Javeed Iqbal; Weiwei Zhang; Adam Cornish; Qiang Gong; Qunpei Yang; Hong Sun; Francesco d'Amore; Sirpa Leppä; Weiping Liu; Kai Fu; Laurence de Leval; Timothy McKeithan; Wing C Chan
Journal:  Nat Commun       Date:  2015-01-14       Impact factor: 14.919

6.  CODV-Ig, a universal bispecific tetravalent and multifunctional immunoglobulin format for medical applications.

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Journal:  MAbs       Date:  2016-03-16       Impact factor: 5.857

7.  Non-covalent carriage of anticancer agents by humanized antibody trastuzumab.

Authors:  Arpita Yadav; Sweta Sharma; Veejendra Kumar Yadav
Journal:  J Mol Model       Date:  2016-04-25       Impact factor: 1.810

Review 8.  Improving theranostics in pancreatic cancer.

Authors:  Jeremy King; Michael Bouvet; Gagandeep Singh; John Williams
Journal:  J Surg Oncol       Date:  2017-05-17       Impact factor: 3.454

9.  Template-Catalyzed, Disulfide Conjugation of Monoclonal Antibodies Using a Natural Amino Acid Tag.

Authors:  Jeremy D King; Yuelong Ma; Yi-Chiu Kuo; Krzysztof P Bzymek; Leah H Goodstein; Kassondra Meyer; Roger E Moore; Desiree Crow; David M Colcher; Gagandeep Singh; David A Horne; John C Williams
Journal:  Bioconjug Chem       Date:  2018-05-25       Impact factor: 4.774

10.  Affinity Maturation of a Cyclic Peptide Handle for Therapeutic Antibodies Using Deep Mutational Scanning.

Authors:  Martijn van Rosmalen; Brian M G Janssen; Natalie M Hendrikse; Ardjan J van der Linden; Pascal A Pieters; Dave Wanders; Tom F A de Greef; Maarten Merkx
Journal:  J Biol Chem       Date:  2016-12-14       Impact factor: 5.157

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