| Literature DB >> 24098760 |
Xue Qin1, Qiliu Peng, Weizhong Tang, Xianjun Lao, Zhiping Chen, Hao Lai, Yan Deng, Cuiju Mo, Jingzhe Sui, Junrong Wu, Limin Zhai, Shi Yang, Shan Li, Jinmin Zhao.
Abstract
BACKGROUND: The mouse double minute 2 (MDM2) gene encodes a phosphoprotein that interacts with P53 and negatively regulates its activity. The SNP309 polymorphism (T-G) in the promoter of MDM2 gene has been reported to be associated with enhanced MDM2 expression and tumor development. Studies investigating the association between MDM2 SNP309 polymorphism and colorectal cancer (CRC) risk reported conflicting results. We performed a meta-analysis of all available studies to explore the association of this polymorphism with CRC risk.Entities:
Mesh:
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Year: 2013 PMID: 24098760 PMCID: PMC3786895 DOI: 10.1371/journal.pone.0076031
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Scale for Quality Assessment.
| Criteria | Score |
|---|---|
| Representativeness of cases | |
| Selected from population or cancer registry | 2 |
| Selected from any gastroenterology /surgery service | 1 |
| Selected without clearly defined sampling frame or with extensive inclusion/exclusion criteria | 0 |
| Credibility of controls | |
| Population- or neighbor- based | 3 |
| Blood donors or volunteers | 2 |
| Hospital-based (cancer-free patients) | 1 |
| Healthy volunteers, but without total description | 0.5 |
| Gastroenterology patients | 0.25 |
| Not described | 0 |
| Ascertainment of colorectal cancer | |
| Histological or pathological confirmation | 2 |
| Diagnosis of colorectal cancer by patient medical record | 1 |
| Not described | 0 |
| Genotyping examination | |
| Genotyping done under ‘‘blinded’’ condition | 1 |
| Unblinded or not mentioned | 0 |
| Hardy-Weinberg equilibrium | |
| Hardy-Weinberg equilibrium in controls | 2 |
| Hardy-Weinberg disequilibrium in controls | 1 |
| No checking for Hardy-Weinberg disequilibrium | 0 |
| Association assessment | |
| Assess association between genotypes and colorectal cancer with appropriate statistics and adjustment for confounders | 2 |
| Assess association between genotypes and colorectal cancer with appropriate statistics without adjustment for confounders | 1 |
| Inappropriate statistics used | 0 |
Figure 1Flowchart of selection of studies for inclusion in meta-analysis.
Characteristics of studies included in this meta-analysis.
| First author (Year) | Country | Ethnicity | Sample size (case/control) | Genotyping methods | Matching criteria | Source of control | CRC diagnosis | Quality scores | HWE( |
|---|---|---|---|---|---|---|---|---|---|
| Alhopuro 2005 | Finland | Caucasian | 969/185 | PCR-RFLP | Region | PB | HC | 8 | 0.282 |
| Sotamaa1 2005 | Finland | Caucasian | 121/209 | PCR-RFLP | Region, gender | PB | NA | 8 | 0.351 |
| Sotamaa2 2005 | America | Caucasian | 30/138 | PCR-RFLP | Region, gender | PB | NA | 8 |
|
| Menin 2006 | Italy | Caucasian | 153/92 | PCR-SSCP | Region | PB | HC | 5 | 0.689 |
| Talseth 2006 | Australia | Caucasian | 116/98 | TaqMan, Assay | NA | HB | NA | 5 | 0.085 |
| Alazzouzi 2007 | Spain | Caucasian | 152/184 | PCR-SSCP | Ethnicity | HB | NA | 4 |
|
| Liu 2008 | China | Asian | 1000/1300 | ARMS-PCR | Age, gender | HB | PC | 10 | 0.757 |
| Jin 2008 | China | Asian | 202/836 | PCR-RFLP | Smoking, drinking,gender | PB | PC | 9 |
|
| Chen 2009 | China | Asian | 123/138 | PCR-SSCP | NA | HB | NA | 4 |
|
| Sugano 2010 | Japan | Asian | 211/59 | FISH | NA | HB | PC | 5 | 0.604 |
| Joshi 2011 | Japan | Asian | 685/778 | PCR-RFLP | Age, gender | PB | HC | 11 | 0.775 |
| Zhang 2012 | China | Asian | 444/569 | MALDI-TOF | Age, gender | HB | HC | 8 | 0.928 |
| Chaar 2012 | Tunisia | African | 167/167 | On-Chip Electrophoresis | Region | HB | HC | 6 |
|
| Tuna 2013 | Turkey | Caucasian | 87/75 | PCR-RFLP | Age, Region | HB | HC | 5.5 | 0.986 |
HC, Histologically confirmed; PC, Pathologically confirmed; NA, Not available; PB, Population–based; HB, Hospital–based; HWE, Hardy–Weinberg equilibrium in control population; PCR–RFLP, Polymerase chain reaction-restriction fragment length polymorphism; PCR-SSCP, Polymerase chain reaction–single strand conformation polymorphism; ARMS-PCR, Amplification Refractory Mutation System-Polymerase Chain Reaction; MALDI-TOF, Matrix-assisted laser desorption/ionization time-of-flight; FISH, Fluorescence in situ hybridization
Meta-analysis of MDM2 SNP309 polymorphism and CRC risk.
| Analysis | No. of studies | Homozygote (GG vs. TT) | Heterozygote (TG vs. TT) | Dominant model (GG+TG vs. TT) | Recessive model (GG vs. TG+TT) | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| OR (95% CI) |
| OR (95% CI) |
| OR (95% CI) |
| OR (95% CI) |
| ||||||||
| Overall | 14 | 1.086 (0.773-1.525) | 0.634/0.000 | 1.217 (0.979-1.512) | 0.077/0.000 | 1.176 (0.936-1.478) | 0.163/0.000 | 0.959 (0.748-1.230) | 0.743/0.000 | ||||||
| Ethnicity | |||||||||||||||
| Caucasian | 7 | 0.848 (0.643-1.118) | 0.242/0.307 | 1.071 (0.881-1.301) | 0.494/0.185 | 1.016 (0.844-1.223) | 0.865/0.200 | 0.812 (0.635-1.038) | 0.097/0.136 | ||||||
| Asian | 6 | 1.086 (0.729-1.618) | 0.684/0.000 |
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| 1.027 (0.729-1.447) | 0.880/0.000 | ||||||
| African | 1 |
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| p53 mutation status | |||||||||||||||
| Positive | 2 | 0.777 (0.426-1.418) | 0.411/0.138 | 1.209 (0.824-1.773) | 0.332/0.344 | 1.100 (0.768-1.575) | 0.604/0.225 | 0.709 (0.398-1.263) | 0.243/0.196 | ||||||
| Negative | 2 | 0.884 (0.482-1.620) | 0.690/0.668 | 1.409 (0.956-2.075) | 0.083/0.340 | 1.274 (0.884-1.835) | 0.194/0.515 | 0.762 (0.429-1.352) | 0.353/0.457 | ||||||
| Gender | |||||||||||||||
| Female | 3 | 1.030 (0.736-1.442) | 0.862/0.206 | 1.003 (0.760-1.325) | 0.981/0.813 | 1.011 (0.776-1.317) | 0.937/0.936 | 0.898 (0.517-1.560) | 0.702/0.058 | ||||||
| Male | 3 | 0.978 (0.727-1.317) | 0.884/0.219 | 1.110 (0.603-2.042) | 0.737/0.008 | 1.026 (0.601-1.753) | 0.925/0.017 | 0.852 (0.672-1.080) | 0.186/0.437 | ||||||
| HWE in controls | |||||||||||||||
| Yes | 9 | 1.054 (0.763-1.457) | 0.751/0.000 |
|
| 1.124 (0.942-1.342) | 0.195/0.046 | 0.968 (0.723-1.296) | 0.829/0.000 | ||||||
| No | 5 | 1.186 (0.422-3.335) | 0.746/0.000 | 1.535 (0.749-3.145) | 0.241/0.000 | 1.421 (0.675-2.992) | 0.355/0.000 | 0.921 (0.529-1.604) | 0.771/0.002 | ||||||
P h P values of Q-test for heterogeneity test. OR, odds ratio; CI, confidence intervals; HWE, Hardy–Weinberg equilibrium
Figure 2Subgroup analysis by ethnicity in the meta-analysis on the association between MDM2 SNP309 polymorphism and CRC risk using a random-effect model (additive model TG versus TT).
Figure 3Galbraith plots of MDM2 SNP309 polymorphism and CRC risk in additive model TG versus TT.
The studies of Chaar et al. and Liu et al. were spotted as outliers.
Figure 4Influence analysis for additive model TG versus TT in the overall meta-analysis.
This figure shows the influence of individual studies on the summary OR. The middle vertical axis indicates the overall OR and the two vertical axes indicate its 95% CI. Every hollow round indicates the pooled OR when the left study is omitted in this meta-analysis. The two ends of every broken line represent the 95% CI.
Figure 5Funnel plots for publication bias of the meta-analysis on the association between MDM2 SNP309 polymorphism and CRC risk of the overall populations (additive model TG versus TT).