| Literature DB >> 24098588 |
Dieta Hanson1, Samantha Cooke, Yayoi Hirano, Manuel A E Malaquias, Fabio Crocetta, Ángel Valdés.
Abstract
Haminoea japonica is a species of opisthobranch sea slug native to Japan and Korea. Non-native populations have spread unnoticed for decades due to difficulties in the taxonomy of Haminoea species. Haminoea japonica is associated with a schistosome parasite in San Francisco Bay, thus further spread could have consequence to human health and economies. Anecdotal evidence suggests that H. japonica has displaced native species of Haminoea in North America and Europe, becoming locally dominant in estuaries and coastal lagoons. In this paper we study the population genetics of native and non-native populations of H. japonica based on mt-DNA data including newly discovered populations in Italy and France. The conclusions of this study further corroborate a Northeastern Japan origin for the non-native populations and suggest possible independent introductions into North America and Europe. Additionally, the data obtained revealed possible secondary introductions within Japan. Although non-native populations have experienced severe genetic bottlenecks they have colonized different regions with a broad range of water temperatures and other environmental conditions. The environmental tolerance of this species, along with its ability to become dominant in invaded areas and its association with a schistosome parasite, suggest H. japonica could be a dangerous invasive species.Entities:
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Year: 2013 PMID: 24098588 PMCID: PMC3789696 DOI: 10.1371/journal.pone.0077457
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1Timeline of the spread of H. japonica into North America and Europe.
List of populations studied in the population genetics analyses including haplogroup codes, haplotype IDs, and COI GenBank accession numbers for all specimens examined.
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| Amakusa, Japan | 4 | A, C | H1, H2, H3, H4 | JN830648-JN830651 |
| Atsumi Peninsula, Japan | 3 | B | H16, H30 | KF572952-KF572954 |
| Boundary Bay, Canada | 2 | H | H23 | JN830721-JN830722 |
| Hachinohe, Japan | 4 | F | H5, H6, H7 | JN830652-JN830655 |
| Hakodate, Japan | 8 | F | H5, H7, H8, H9 | JN830656-JN830663 |
| Hiroshima, Japan | 2 | B, C | H27, H28 | JQ693573-JQ693574 |
| Hitachinaka, Japan | 9 | G, H | H20, H21, H22 | JN830692-JN830700 |
| Lago di | 4 | H | H20, H25 | JX679602-JX679605 |
| Lago Fusaro, Italy | 5 | H | H25 | JX679598-JX679601 |
| Laguna di Orbetello, Italy | 1 | H | H23 | KF572955 |
| Latina, Italy | 2 | H | H20 | KF572956-KF572957 |
| Le Barcarès, France | 3 | H | H20 | KF615822-KF615824 |
| Mangokuura, Japan | 16 | B, E, H | H19, H20, H23, H27, H29, H31 | JQ693575, KF572970-KF572984 |
| Matsushima Bay, Japan | 12 | H | H20, H23, H32 | KF572958-KF572969 |
| Minamisatsuma, Japan | 4 | A | H33, H34, H35 | KF572985-KF572988 |
| Pléneuf-val-André, France | 2 | H | H20 | JN830727-JN830728 |
| Po Delta (Piallassa Baiona, Sacca di Goro), Italy | 5 | H | H23 | KF572989-KF572993 |
| Pontevedra, Spain | 4 | H | H20, H25 | JN830729-JN830732 |
| Sado Island, Japan | 4 | E, F | H5, H10, H11 | JN830664-JN830667 |
| Sagami Bay, Japan | 2 | D | H13 | JN830669-JN830670 |
| San Francisco Bay, California | 12 | H | H23 | JN830703-JN830714 |
| San Juan Islands, Washington | 9 | H | H20, H23 | JN830723-JN830725, JN830718-JN830722 |
| Souma, Japan | 1 | H | H26 | JQ693572 |
| Tokyo Bay | 12 | B, C, D, E | H13, H14, H15, H16, H17 | JN830671-JN830682 |
| Tomales Bay, California | 3 | H | H20, H23, H24 | JN830715-JN830717 |
| Uchiura Bay, Japan | 9 | B, C | H16, H18, H19 | JN830683-JN830691 |
| Wando, South Korea | 1 | F | H12 | JN830668 |
List of specimens used for phylogenetic analysis, with sampling localities, GenBank accession numbers and location of voucher specimens.
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| Philippines | MNHN 42261 | KF615810 | KF615809 |
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| Indonesia | NHMUK 20050660 | DQ974673 | DQ927230 |
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| East Timor | NHMUK 20060109 | KF615835 | KF615808 |
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| Philippines | MNHN 42265 | KF615821 | KF615788 |
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| Mediterranean Sea | NHMUK 20070029 | KF615824 | KF615786 |
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| Mediterranean Sea | NHMUK 20070065 | KF615823 | KF615787 |
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| Mediterranean Sea | NHMUK 20070028 | KF615822 | KF615785 |
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| United Arab Emirates | NHMUK 20060104 | KF615826 | KF615783 |
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| South Africa | NHMUK 20070186 | KF615825 | KF615784 |
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| Philippines | MNHN 42249 | DQ974675 | DQ927232 |
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| Indonesia | NHMUK 20030302 | KF615842 | KF615807 |
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| Philippines | MNHN 42252 | DQ974677 | DQ927234 |
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| UK | NHMUK 20060324 | DQ974676 | DQ927233 |
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| Portugal | NHMUK 20070018 | KF615838 | KF615804 |
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| Portugal | NHMUK 20070020 | KF615837 | KF615803 |
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| Portugal | NHMUK 20070020 | KF615839 | KF615805 |
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| UK | NHMUK 20070021 | KF615836 | KF615806 |
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| Mediterranean Sea | NHMUK 20060326 | DQ974674 | DQ927231 |
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| Mediterranean Sea | NHMUK 20060326 | KF615841 | KF615802 |
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| Italy | NHMUK 20070177 | KF615840 | KF615801 |
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| Florida, USA | NHMUK 20070180 | KF615829 | KF615797 |
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| Florida, USA | NHMUK 20070448 | KF615828 | KF615798 |
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| Florida, USA | NHMUK 20070318 | KF615827 | KF615800 |
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| Florida, USA | NHMUK 20070448 | KF615831 | KF615799 |
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| Florida, USA | NHMUK 20070603/1 | KF615832 | KF615795 |
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| Florida, USA | NHMUK 20070603/2 | KF615830 | KF615796 |
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| Mexico | NHMUK 20070090 | KF615833 | KF615793 |
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| Mexico | NHMUK 20070175 | KF615834 | KF615794 |
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| Azores, Portugal | NHMUK 20070458 | KF615844 | KF615791 |
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| Azores, Portugal | NHMUK 20070458 | KF615845 | KF615790 |
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| Canary Is, Spain | NHMUK 20030836 | KF615846 | KF615792 |
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| California, USA | CASIZ 97502 | KF615843 | KF615789 |
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| South Africa | NHMUK 20070314 | KF615816 | KF615774 |
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| South Africa | NHMUK 20070315 | KF615815 | KF615775 |
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| South Africa | NHMUK 20070315 | KF615814 | KF615773 |
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| Florida, USA | NHMUK 20070316 | KF615817 | KF615778 |
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| Mexico | NHMUK 20070091 | KF615819 | KF615782 |
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| Mexico | NHMUK 20070094 | KF615811 | KF615779 |
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| Mexico | NHMUK 20070092 | KF615818 | KF615780 |
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| Mexico | NHMUK 20070093 | KF615820 | KF615781 |
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| Portugal | NHMUK 20030296 | KF615813 | KF615776 |
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| Portugal | NHMUK 20030296 | KF615812 | KF615777 |
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| Senegal | NHMUK 20030784/3 | DQ986566 | DQ986693 |
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| Panama | BMNH 20060118 | DQ974658 | DQ927209 |
Abbreviations: CASIZ, California Academy of Sciences (Invertebrate Zoology), San Francisco; MNHN, Museum National d’Histoire Naturelle, Paris; NHMUK The Natural History Museum, London
Figure 2Bayesian molecular phylogeny produced from the combined mitochondrial COI and nuclear 28S rRNA genes.
Numbers above branches are posterior probabilities. Outgroup taxa removed for clarity.
Results of the AMOVA analyses for all populations, populations in the native range and populations in the non-native range.
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| All | Among groups | 4 | 334.700 | 2.62927 | 36.74 | FCT=0.36742* |
| Among populations within groups | 22 | 171.404 | 0.88437 | 12.36 | FSC=0.19537* | |
| Within populations | 115 | 418.875 | 3.64239 | 50.90 | FST=0.491* | |
| Total | 141 | 924.979 | 7.15604 | |||
| Native | Among groups | 2 | 228.837 | 3.35116 | 32.70 | FCT=0.32702* |
| Among populations within groups | 12 | 161.142 | 1.47896 | 14.43 | FSC=0.21445* | |
| Within populations | 76 | 411.736 | 5.41758 | 52.87 | FST=0.47134* | |
| Total | 90 | 801.714 | 10.2477 | |||
| Non-native | Among groups | 1 | 3.461 | 0.07369 | 15.43 | FCT=0.15434 |
| Among populations within groups | 10 | 10.263 | 0.22070 | 46.23 | FSC=0.54663* | |
| Within populations | 39 | 7.139 | 0.18305 | 38.34 | FST=0.6166* | |
| Total | 50 | 20.863 | 0.47744 |
Significant values marked with an asterisk.
Matrix of the population group comparisons results, with FST values (lower triangular) and associated p values (upper triangular).
| NE Japan | S Japan | Sea of Japan | N America | Europe | |
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| NE Japan | - | 0.0000* | 0.0000* | 0.005 | 0.0479 |
| S Japan |
| - | 0.0000* | 0.0000* | 0.0000* |
| Sea of Japan |
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| - | 0.0000* | 0.0000* |
| N America | 0.09066 |
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| - | 0.0001* |
| Europe | 0.05459 |
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After Bonferroni correction (10 comparisons) significant values are p < 0.005. Significantly distinct groups in bold, significant p values marked with an asterisk.
Figure 3Haplotype network and distribution map of records of H. japonica in Japan, Korea, Europe and North America.
Numbers in the map indicate the localities listed in the key to localities. Numbers in the haplotype network indicate haplotype number as in Table 1. Haplotypes marked with an asterisk have been newly found in this study.
Figure 4Rarefaction analyses of COI haplotype diversity with sampling effort in H. japonica.
Black circles = Chao2 mean, Black squares = Sobs. A. Native range excluding Northeastern Japan. B. Northeastern Japan. C. Non-native range.
Nucleotide (π) and haplotype (h) diversity for all populations examined except those with only one individual (Wando, Laguna di Orbetello, Souma).
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| Boundary Bay | 0.00000 | 0.0000 |
| San Francisco Bay | 0.00000 | 0.0000 |
| San Juan Islands | 0.00084 | 0.5556 |
| Tomales Bay | 0.00304 | 1.0000 |
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| 0.00097 | 0.3889 |
| Lago di | 0.00076 | 0.5000 |
| Lago Fusaro | 0.00000 | 0.0000 |
| Latina | 0.00000 | 0.0000 |
| Le Barcarès | 0.001013 | 0.6667 |
| Pléneuf-Val-André | 0.00000 | 0.0000 |
| Po Delta | 0.00000 | 0.0000 |
| Pontevedra | 0.00152 | 0.5000 |
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| 0.003293 | 0.2381 |
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| 0.000652 | 0.2929 |
| Amakusa | 0.03926 | 1.0000 |
| Atsumi Peninsula | 0.00202 | 0.6667 |
| Hachinohe | 0.00177 | 0.8333 |
| Hakodate | 0.00152 | 0.6429 |
| Hiroshima | 0.00745 | 1.0000 |
| Hitachinaka | 0.00388 | 0.6389 |
| Mangokuura | 0.01167 | 0.7667 |
| Matsushima Bay | 0.00108 | 0.6212 |
| Minamisatsuma | 0.00455 | 0.8333 |
| Sado Island | 0.00633 | 0.8333 |
| Sagami Bay | 0.00000 | 0.0000 |
| Tokyo Bay | 0.04932 | 0.7879 |
| Uchiura Bay | 0.03073 | 0.6667 |
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| 0.012275 | 0.7146 |