Literature DB >> 24098218

2-Di-chloro-methyl-N-ethyl-5-(1-phenyl-silolan-1-yl)cyclo-pent-3-enecarboxamide.

Han Xiao1, Wan-Qiu Yang, Liang Shen.   

Abstract

In the title compound, C19H25Cl2NOSi, the NH group and the carbonyl O atom of the amide fragment are involved in an inter-molecular N-H⋯O hydrogen bond forming chains of mol-ecules. The plane of the benzene ring forms a dihedral angle of 50.5 (2)° with respect to the silolane ring and an angle of 49.74 (2)° with the cyclo-pentyl moiety.

Entities:  

Year:  2013        PMID: 24098218      PMCID: PMC3790399          DOI: 10.1107/S160053681302446X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biological activity of silicon-containing compounds, see: Tacke & Wannagat (1975 ▶, 1979 ▶); Voronkov (1979 ▶). For synthetic methods, see: Matthews et al. (2001 ▶, 2002 ▶); Benkeser et al. (1962 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C19H25Cl2NOSi M = 382.39 Orthorhombic, a = 42.892 (9) Å b = 13.335 (3) Å c = 14.234 (3) Å V = 8141 (3) Å3 Z = 16 Mo Kα radiation μ = 0.38 mm−1 T = 295 K 0.20 × 0.10 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.927, T max = 0.963 3814 measured reflections 1925 independent reflections 1375 reflections with I > 2σ(I) R int = 0.045 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.048 wR(F 2) = 0.106 S = 1.03 1925 reflections 219 parameters 1 restraint H-atom parameters constrained Δρmax = 0.17 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1985 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablock(s) I, 1R. DOI: 10.1107/S160053681302446X/im2436sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681302446X/im2436Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S160053681302446X/im2436Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C19H25Cl2NOSiF(000) = 3232
Mr = 382.39Dx = 1.248 Mg m3
Orthorhombic, Fdd2Mo Kα radiation, λ = 0.71073 Å
Hall symbol: F 2 -2dCell parameters from 25 reflections
a = 42.892 (9) Åθ = 9–13°
b = 13.335 (3) ŵ = 0.38 mm1
c = 14.234 (3) ÅT = 295 K
V = 8141 (3) Å3Block, colourless
Z = 160.20 × 0.10 × 0.10 mm
Enraf–Nonius CAD-4 diffractometer1375 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.045
Graphite monochromatorθmax = 25.4°, θmin = 1.9°
ω/2θ scansh = −51→51
Absorption correction: ψ scan (North et al., 1968)k = 0→16
Tmin = 0.927, Tmax = 0.963l = −17→0
3814 measured reflections3 standard reflections every 200 reflections
1925 independent reflections intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.048H-atom parameters constrained
wR(F2) = 0.106w = 1/[σ2(Fo2) + (0.0512P)2] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
1925 reflectionsΔρmax = 0.17 e Å3
219 parametersΔρmin = −0.22 e Å3
1 restraintExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.00184 (15)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.94858 (13)−0.0023 (4)0.1728 (4)0.0739 (16)
H1A0.9458−0.00790.23740.089*
C20.94605 (15)−0.0875 (5)0.1173 (5)0.090 (2)
H2A0.9415−0.14920.14460.108*
C30.95014 (17)−0.0805 (6)0.0235 (6)0.100 (2)
H3A0.9488−0.1376−0.01370.120*
C40.95610 (19)0.0076 (7)−0.0158 (5)0.116 (3)
H4A0.95860.0119−0.08050.139*
C50.95859 (15)0.0936 (5)0.0391 (4)0.0888 (19)
H5A0.96270.15480.01030.107*
C60.95507 (10)0.0902 (4)0.1349 (3)0.0557 (12)
C70.98950 (12)0.2923 (4)0.1792 (4)0.0792 (17)
H7A1.00410.26120.13600.095*
H7B0.98180.35420.15190.095*
C81.00467 (18)0.3112 (6)0.2756 (6)0.123 (3)
H8A1.02660.32640.26700.148*
H8B0.99490.36870.30510.148*
C91.00157 (18)0.2240 (8)0.3370 (5)0.128 (3)
H9A1.00620.24340.40120.154*
H9B1.01650.17310.31840.154*
C100.96865 (14)0.1803 (4)0.3323 (4)0.0796 (16)
H10A0.95490.21360.37640.096*
H10B0.96880.10890.34550.096*
C110.91725 (10)0.2683 (3)0.2005 (3)0.0526 (11)
H11A0.91390.28930.13530.063*
C120.91344 (13)0.3580 (4)0.2632 (4)0.0716 (15)
H12A0.92760.41080.26440.086*
C130.88879 (14)0.3557 (4)0.3152 (4)0.0754 (15)
H13A0.88410.40440.35980.090*
C140.86844 (11)0.2662 (3)0.2964 (3)0.0563 (12)
H14A0.86470.23040.35540.068*
C150.88968 (9)0.2007 (3)0.2312 (3)0.0448 (10)
H15A0.89820.14580.26920.054*
C160.87364 (10)0.1546 (3)0.1461 (3)0.0460 (10)
C170.85258 (15)0.0022 (4)0.0751 (4)0.0873 (18)
H17A0.83070.02030.07590.105*
H17B0.86110.02300.01510.105*
C180.85540 (18)−0.1051 (4)0.0838 (6)0.113 (2)
H18A0.8427−0.13710.03690.169*
H18B0.8486−0.12550.14510.169*
H18C0.8768−0.12430.07510.169*
C190.83734 (11)0.2984 (4)0.2541 (4)0.0637 (13)
H19A0.84110.32670.19160.076*
Cl10.81918 (4)0.39170 (15)0.32648 (13)0.1198 (8)
Cl20.81099 (3)0.19693 (13)0.24396 (13)0.0928 (6)
N10.86865 (8)0.0559 (2)0.1503 (3)0.0522 (10)
H10.87510.02310.19860.063*
O10.86593 (8)0.2069 (2)0.0793 (2)0.0605 (9)
Si10.95663 (3)0.20524 (10)0.20897 (9)0.0551 (4)
U11U22U33U12U13U23
C10.088 (4)0.065 (3)0.070 (4)0.010 (3)0.005 (3)−0.005 (3)
C20.105 (5)0.063 (4)0.103 (6)0.012 (3)−0.001 (4)−0.011 (4)
C30.112 (5)0.094 (5)0.093 (6)0.010 (4)0.002 (4)−0.038 (5)
C40.167 (7)0.112 (6)0.068 (5)−0.006 (5)0.024 (5)−0.023 (4)
C50.115 (5)0.080 (4)0.071 (4)−0.016 (4)0.019 (4)−0.001 (3)
C60.048 (2)0.069 (3)0.050 (3)0.002 (2)0.009 (2)−0.005 (2)
C70.053 (3)0.082 (4)0.102 (5)−0.016 (3)0.006 (3)−0.011 (3)
C80.091 (5)0.145 (6)0.133 (7)−0.052 (5)−0.030 (5)−0.014 (6)
C90.104 (5)0.190 (9)0.091 (5)−0.026 (6)−0.038 (5)−0.008 (6)
C100.088 (4)0.091 (4)0.060 (3)0.009 (3)−0.008 (3)−0.010 (3)
C110.061 (3)0.045 (2)0.052 (3)−0.009 (2)0.001 (2)0.000 (2)
C120.074 (4)0.049 (3)0.092 (4)−0.005 (3)−0.013 (3)−0.010 (3)
C130.082 (4)0.072 (3)0.073 (4)0.013 (3)−0.005 (3)−0.027 (3)
C140.071 (3)0.057 (3)0.041 (3)0.008 (2)0.005 (2)−0.004 (2)
C150.053 (3)0.043 (2)0.039 (2)0.001 (2)0.000 (2)0.006 (2)
C160.047 (2)0.046 (3)0.045 (3)0.005 (2)0.0012 (19)0.006 (2)
C170.117 (5)0.062 (3)0.083 (4)−0.009 (3)−0.034 (4)−0.007 (3)
C180.163 (6)0.072 (4)0.104 (5)−0.024 (4)−0.038 (5)−0.016 (4)
C190.064 (3)0.071 (3)0.056 (3)0.017 (3)0.004 (3)−0.002 (3)
Cl10.1200 (14)0.1454 (16)0.0939 (12)0.0787 (12)0.0007 (11)−0.0313 (12)
Cl20.0573 (8)0.1037 (11)0.1173 (13)0.0021 (8)0.0057 (8)0.0253 (10)
N10.062 (2)0.043 (2)0.051 (2)−0.0045 (18)−0.0147 (19)0.0037 (18)
O10.084 (2)0.0553 (18)0.0425 (17)0.0005 (16)−0.0081 (16)0.0121 (17)
Si10.0507 (7)0.0603 (8)0.0541 (7)−0.0046 (6)0.0019 (6)−0.0013 (7)
C1—C61.375 (7)C11—C151.550 (6)
C1—C21.388 (8)C11—Si11.891 (5)
C1—H1A0.9300C11—H11A0.9800
C2—C31.350 (10)C12—C131.291 (7)
C2—H2A0.9300C12—H12A0.9300
C3—C41.325 (10)C13—C141.502 (7)
C3—H3A0.9300C13—H13A0.9300
C4—C51.393 (9)C14—C191.525 (7)
C4—H4A0.9300C14—C151.567 (6)
C5—C61.372 (8)C14—H14A0.9800
C5—H5A0.9300C15—C161.523 (6)
C6—Si11.862 (5)C15—H15A0.9800
C7—C81.539 (10)C16—O11.224 (5)
C7—Si11.875 (5)C16—N11.335 (5)
C7—H7A0.9700C17—C181.442 (8)
C7—H7B0.9700C17—N11.461 (6)
C8—C91.461 (10)C17—H17A0.9700
C8—H8A0.9700C17—H17B0.9700
C8—H8B0.9700C18—H18A0.9600
C9—C101.529 (10)C18—H18B0.9600
C9—H9A0.9700C18—H18C0.9600
C9—H9B0.9700C19—Cl21.769 (5)
C10—Si11.859 (6)C19—Cl11.794 (5)
C10—H10A0.9700C19—H19A0.9800
C10—H10B0.9700N1—H10.8600
C11—C121.501 (6)
C6—C1—C2121.8 (6)C13—C12—C11114.2 (4)
C6—C1—H1A119.1C13—C12—H12A122.9
C2—C1—H1A119.1C11—C12—H12A122.9
C3—C2—C1119.8 (7)C12—C13—C14113.1 (5)
C3—C2—H2A120.1C12—C13—H13A123.4
C1—C2—H2A120.1C14—C13—H13A123.4
C4—C3—C2120.2 (7)C13—C14—C19110.8 (4)
C4—C3—H3A119.9C13—C14—C15102.2 (4)
C2—C3—H3A119.9C19—C14—C15115.5 (4)
C3—C4—C5120.6 (7)C13—C14—H14A109.3
C3—C4—H4A119.7C19—C14—H14A109.3
C5—C4—H4A119.7C15—C14—H14A109.3
C6—C5—C4121.5 (6)C16—C15—C11110.8 (4)
C6—C5—H5A119.3C16—C15—C14115.7 (4)
C4—C5—H5A119.3C11—C15—C14106.6 (3)
C5—C6—C1116.2 (5)C16—C15—H15A107.8
C5—C6—Si1122.1 (5)C11—C15—H15A107.8
C1—C6—Si1121.6 (4)C14—C15—H15A107.8
C8—C7—Si1102.6 (4)O1—C16—N1123.6 (4)
C8—C7—H7A111.3O1—C16—C15120.7 (4)
Si1—C7—H7A111.3N1—C16—C15115.7 (4)
C8—C7—H7B111.3C18—C17—N1112.6 (5)
Si1—C7—H7B111.3C18—C17—H17A109.1
H7A—C7—H7B109.2N1—C17—H17A109.1
C9—C8—C7111.4 (5)C18—C17—H17B109.1
C9—C8—H8A109.3N1—C17—H17B109.1
C7—C8—H8A109.3H17A—C17—H17B107.8
C9—C8—H8B109.3C17—C18—H18A109.5
C7—C8—H8B109.3C17—C18—H18B109.5
H8A—C8—H8B108.0H18A—C18—H18B109.5
C8—C9—C10111.2 (6)C17—C18—H18C109.5
C8—C9—H9A109.4H18A—C18—H18C109.5
C10—C9—H9A109.4H18B—C18—H18C109.5
C8—C9—H9B109.4C14—C19—Cl2112.1 (3)
C10—C9—H9B109.4C14—C19—Cl1110.4 (3)
H9A—C9—H9B108.0Cl2—C19—Cl1107.5 (3)
C9—C10—Si1103.3 (5)C14—C19—H19A108.9
C9—C10—H10A111.1Cl2—C19—H19A108.9
Si1—C10—H10A111.1Cl1—C19—H19A108.9
C9—C10—H10B111.1C16—N1—C17121.8 (4)
Si1—C10—H10B111.1C16—N1—H1119.1
H10A—C10—H10B109.1C17—N1—H1119.1
C12—C11—C15102.3 (4)C10—Si1—C6113.4 (2)
C12—C11—Si1114.4 (3)C10—Si1—C796.6 (3)
C15—C11—Si1113.9 (3)C6—Si1—C7114.2 (2)
C12—C11—H11A108.6C10—Si1—C11112.8 (2)
C15—C11—H11A108.6C6—Si1—C11107.3 (2)
Si1—C11—H11A108.6C7—Si1—C11112.4 (2)
C6—C1—C2—C30.3 (10)C14—C15—C16—N1−107.3 (4)
C1—C2—C3—C4−1.0 (12)C13—C14—C19—Cl2−173.0 (4)
C2—C3—C4—C50.8 (13)C15—C14—C19—Cl271.5 (5)
C3—C4—C5—C60.1 (12)C13—C14—C19—Cl1−53.2 (5)
C4—C5—C6—C1−0.8 (10)C15—C14—C19—Cl1−168.8 (3)
C4—C5—C6—Si1−177.3 (5)O1—C16—N1—C17−1.6 (7)
C2—C1—C6—C50.6 (9)C15—C16—N1—C17178.0 (4)
C2—C1—C6—Si1177.1 (4)C18—C17—N1—C16167.7 (5)
Si1—C7—C8—C931.3 (8)C9—C10—Si1—C6108.3 (5)
C7—C8—C9—C10−44.1 (9)C9—C10—Si1—C7−11.6 (5)
C8—C9—C10—Si132.6 (7)C9—C10—Si1—C11−129.4 (5)
C15—C11—C12—C13−4.7 (6)C5—C6—Si1—C10−154.6 (5)
Si1—C11—C12—C13−128.3 (5)C1—C6—Si1—C1029.1 (5)
C11—C12—C13—C14−3.7 (7)C5—C6—Si1—C7−45.2 (6)
C12—C13—C14—C19−113.5 (5)C1—C6—Si1—C7138.5 (4)
C12—C13—C14—C1510.1 (6)C5—C6—Si1—C1180.2 (5)
C12—C11—C15—C16137.1 (4)C1—C6—Si1—C11−96.2 (4)
Si1—C11—C15—C16−98.9 (4)C8—C7—Si1—C10−10.0 (5)
C12—C11—C15—C1410.5 (4)C8—C7—Si1—C6−129.4 (5)
Si1—C11—C15—C14134.5 (3)C8—C7—Si1—C11108.0 (5)
C13—C14—C15—C16−135.9 (4)C12—C11—Si1—C1049.2 (4)
C19—C14—C15—C16−15.5 (5)C15—C11—Si1—C10−68.0 (4)
C13—C14—C15—C11−12.3 (5)C12—C11—Si1—C6174.8 (4)
C19—C14—C15—C11108.1 (4)C15—C11—Si1—C657.6 (4)
C11—C15—C16—O1−49.2 (5)C12—C11—Si1—C7−58.8 (4)
C14—C15—C16—O172.3 (5)C15—C11—Si1—C7−176.0 (3)
C11—C15—C16—N1131.2 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.862.102.945 (5)170
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯O1i 0.862.102.945 (5)170

Symmetry code: (i) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 2.  Biological activity of silatranes.

Authors:  M G Voronkov
Journal:  Top Curr Chem       Date:  1979

Review 3.  Syntheses and properties of bioactive organo-silicon compounds.

Authors:  R Tacke; U Wannagat
Journal:  Top Curr Chem       Date:  1979

4.  3,3-Diphenyl-6-(p-toluenesulfonyl)-6-aza-3-silabicyclo[3.1.0]hexane.

Authors:  J L Matthews ; D R McArthur ; K W Muir ; D N White
Journal:  Acta Crystallogr C       Date:  2001-01       Impact factor: 1.172

  4 in total

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