Literature DB >> 24098176

m-Xylylenediaminium di-aqua-bis-[di-hydrogen diphosphato(2-)]cobaltate(II) dihydrate.

Adel Elboulali1, Samah Akriche, Mohamed Rzaigui.   

Abstract

In the title complex, (C8H14N2)[Co(H2P2O7)2(H2O)2]·2H2O, the Co(II) ion lies on an inversion center and is coordinated by two bidentate diphosphate ligands and two water mol-ecules in a slightly distorted octa-hedral coordination geometry. The m-xylylenediaminium cation is located on a twofold rotation axis. In the crystal, a three-dimensional supra-molecular assembly is constructed by O-H⋯O and N-H⋯O hydrogen bonds between the organic cations, complex anions and uncoordin-ated water mol-ecules.

Entities:  

Year:  2013        PMID: 24098176      PMCID: PMC3790354          DOI: 10.1107/S160053681302535X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of diphosphate compounds containing trans­ition metals, see: Erragh et al. (1998 ▶); Handizi et al. (1994 ▶); Dridi et al. (2000 ▶); Cheetham et al. (1999 ▶); Clearfield (1998 ▶). For bond-valence-sum calculations, see: Brown & Altermatt (1985 ▶). For geometrical features in related structures, see: Selmi et al. (2006a ▶,b ▶, 2009 ▶); Gharbi et al. (1994 ▶); Gharbi & Jouini (2004 ▶); Nelson et al. (2007 ▶).

Experimental

Crystal data

(C8H14N2)[Co(H2P2O7)2(H2O)2]·2H2O M = 621.12 Monoclinic, a = 11.933 (2) Å b = 9.132 (4) Å c = 21.441 (3) Å β = 101.20 (2)° V = 2291.8 (11) Å3 Z = 4 Ag Kα radiation λ = 0.56087 Å μ = 0.58 mm−1 T = 293 K 0.27 × 0.21 × 0.15 mm

Data collection

Enraf Nonius CAD4 diffractometer 7386 measured reflections 5609 independent reflections 4197 reflections with I > 2σ(I) R int = 0.019 2 standard reflections every 120 min intensity decay: 2%

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.090 S = 1.06 5609 reflections 167 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.87 e Å−3 Δρmin = −0.41 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1996 ▶); program(s) used to solve structure: SHELXS86 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: WinGX publication routines (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I. DOI: 10.1107/S160053681302535X/lh5650sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S160053681302535X/lh5650Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
(C8H14N2)[Co(H2P2O7)2(H2O)2]·2H2OF(000) = 1276
Mr = 621.12Dx = 1.800 Mg m3
Monoclinic, C2/cAg Kα radiation, λ = 0.56087 Å
Hall symbol: -C 2ycCell parameters from 25 reflections
a = 11.933 (2) Åθ = 9–11°
b = 9.132 (4) ŵ = 0.58 mm1
c = 21.441 (3) ÅT = 293 K
β = 101.20 (2)°Prism, pink
V = 2291.8 (11) Å30.27 × 0.21 × 0.15 mm
Z = 4
Enraf Nonius CAD4 diffractometerRint = 0.019
Radiation source: fine-focus sealed tubeθmax = 28.0°, θmin = 2.2°
Graphite monochromatorh = −19→19
non–profiled ω scansk = −2→15
7386 measured reflectionsl = −2→35
5609 independent reflections2 standard reflections every 120 min
4197 reflections with I > 2σ(I) intensity decay: 2%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0412P)2 + 1.174P] where P = (Fo2 + 2Fc2)/3
5609 reflections(Δ/σ)max = 0.001
167 parametersΔρmax = 0.87 e Å3
6 restraintsΔρmin = −0.41 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.25000.25000.50000.01705 (6)
P10.02843 (3)0.22128 (4)0.571350 (18)0.01809 (7)
P2−0.02421 (3)0.29251 (4)0.435477 (17)0.01764 (7)
O10.14860 (8)0.19560 (13)0.56463 (5)0.0244 (2)
O20.01855 (10)0.34054 (12)0.62180 (6)0.0295 (2)
H2O20.05100.41530.61370.044*
O3−0.03555 (9)0.08962 (12)0.58755 (6)0.0272 (2)
O4−0.04173 (9)0.29279 (16)0.50765 (6)0.0343 (3)
O50.10009 (8)0.30371 (12)0.43469 (5)0.02264 (19)
O6−0.10026 (8)0.41352 (11)0.40494 (5)0.0240 (2)
O7−0.07639 (9)0.14643 (13)0.40722 (7)0.0373 (3)
H7−0.02750.08220.41350.056*
O1W0.25749 (9)0.47229 (13)0.52445 (7)0.0317 (3)
H1W10.2077 (14)0.501 (3)0.5446 (10)0.050*
H2W10.3230 (10)0.503 (3)0.5427 (10)0.050*
O2W0.31653 (13)0.3286 (2)0.17868 (8)0.0503 (4)
H1W20.3666 (14)0.365 (3)0.1596 (10)0.050*
H2W20.2488 (10)0.355 (3)0.1618 (10)0.050*
N10.20006 (11)0.51928 (16)0.36481 (7)0.0286 (3)
H1A0.15060.59330.35940.043*
H1B0.26860.55180.38360.043*
H1C0.17680.45110.38910.043*
C10.09999 (15)0.3728 (2)0.27477 (8)0.0336 (3)
C20.0986 (2)0.2211 (3)0.27536 (10)0.0499 (5)
H20.16440.16960.29290.060*
C30.00000.1464 (4)0.25000.0578 (9)
H30.00000.04460.25000.069*
C40.00000.4479 (3)0.25000.0305 (4)
H40.00000.54970.25000.037*
C50.20697 (16)0.4554 (3)0.30225 (10)0.0477 (5)
H5A0.27190.38960.30700.057*
H5B0.21860.53300.27330.057*
U11U22U33U12U13U23
Co10.01044 (9)0.01735 (11)0.02374 (12)0.00015 (8)0.00423 (8)−0.00035 (9)
P10.01487 (12)0.01621 (14)0.02461 (16)0.00092 (10)0.00736 (11)0.00057 (11)
P20.01156 (12)0.01553 (14)0.02536 (16)0.00003 (10)0.00241 (11)0.00060 (12)
O10.0148 (4)0.0313 (5)0.0283 (5)0.0045 (4)0.0073 (4)0.0064 (4)
O20.0363 (6)0.0195 (5)0.0374 (6)−0.0048 (4)0.0187 (5)−0.0060 (4)
O30.0217 (4)0.0178 (4)0.0446 (6)−0.0032 (4)0.0129 (4)−0.0008 (4)
O40.0202 (4)0.0539 (8)0.0304 (6)0.0138 (5)0.0085 (4)0.0100 (5)
O50.0124 (3)0.0297 (5)0.0256 (5)−0.0013 (3)0.0032 (3)0.0023 (4)
O60.0182 (4)0.0184 (4)0.0339 (5)0.0032 (3)0.0014 (4)0.0034 (4)
O70.0193 (5)0.0182 (5)0.0697 (9)−0.0006 (4)−0.0025 (5)−0.0103 (5)
O1W0.0178 (4)0.0256 (5)0.0525 (7)−0.0017 (4)0.0090 (5)−0.0130 (5)
O2W0.0372 (7)0.0640 (11)0.0506 (9)−0.0005 (7)0.0106 (7)0.0063 (8)
N10.0203 (5)0.0316 (7)0.0327 (7)−0.0009 (5)0.0021 (5)0.0041 (5)
C10.0308 (7)0.0460 (10)0.0233 (7)0.0031 (7)0.0037 (6)−0.0020 (7)
C20.0589 (13)0.0493 (12)0.0396 (10)0.0199 (10)0.0051 (9)0.0030 (9)
C30.086 (3)0.0330 (14)0.0521 (19)0.0000.0083 (18)0.000
C40.0304 (10)0.0333 (12)0.0271 (10)0.0000.0041 (8)0.000
C50.0262 (8)0.0832 (17)0.0347 (9)−0.0055 (9)0.0088 (7)−0.0058 (10)
Co1—O1i2.0695 (11)O2W—H1W20.853 (9)
Co1—O12.0695 (11)O2W—H2W20.855 (9)
Co1—O1Wi2.0940 (15)N1—C51.480 (3)
Co1—O1W2.0940 (14)N1—H1A0.8900
Co1—O52.1044 (11)N1—H1B0.8900
Co1—O5i2.1044 (11)N1—H1C0.8900
P1—O11.4873 (10)C1—C21.385 (3)
P1—O31.5007 (12)C1—C41.389 (2)
P1—O21.5554 (12)C1—C51.501 (3)
P1—O41.5965 (12)C2—C31.377 (3)
P2—O51.4901 (10)C2—H20.9300
P2—O61.4975 (11)C3—C2ii1.377 (3)
P2—O71.5452 (13)C3—H30.9300
P2—O41.6012 (13)C4—C1ii1.389 (2)
O2—H2O20.8200C4—H40.9300
O7—H70.8200C5—H5A0.9700
O1W—H1W10.843 (9)C5—H5B0.9700
O1W—H2W10.849 (9)
O1i—Co1—O1180.0P2—O5—Co1134.09 (7)
O1i—Co1—O1Wi93.85 (5)P2—O7—H7109.5
O1—Co1—O1Wi86.15 (5)Co1—O1W—H1W1115.7 (17)
O1i—Co1—O1W86.15 (5)Co1—O1W—H2W1114.9 (17)
O1—Co1—O1W93.85 (5)H1W1—O1W—H2W1109.9 (18)
O1Wi—Co1—O1W180.00 (8)H1W2—O2W—H2W2112.3 (18)
O1i—Co1—O591.75 (4)C5—N1—H1A109.5
O1—Co1—O588.25 (4)C5—N1—H1B109.5
O1Wi—Co1—O594.01 (5)H1A—N1—H1B109.5
O1W—Co1—O585.99 (5)C5—N1—H1C109.5
O1i—Co1—O5i88.25 (4)H1A—N1—H1C109.5
O1—Co1—O5i91.75 (4)H1B—N1—H1C109.5
O1Wi—Co1—O5i85.99 (5)C2—C1—C4119.07 (19)
O1W—Co1—O5i94.01 (5)C2—C1—C5120.64 (19)
O5—Co1—O5i180.00 (5)C4—C1—C5120.3 (2)
O1—P1—O3116.07 (7)C3—C2—C1120.2 (2)
O1—P1—O2112.49 (7)C3—C2—H2119.9
O3—P1—O2106.82 (7)C1—C2—H2119.9
O1—P1—O4109.69 (6)C2ii—C3—C2120.6 (3)
O3—P1—O4108.66 (7)C2ii—C3—H3119.7
O2—P1—O4102.15 (7)C2—C3—H3119.7
O5—P2—O6117.67 (6)C1ii—C4—C1120.8 (2)
O5—P2—O7112.39 (7)C1ii—C4—H4119.6
O6—P2—O7107.56 (7)C1—C4—H4119.6
O5—P2—O4109.15 (7)N1—C5—C1111.18 (15)
O6—P2—O4103.86 (7)N1—C5—H5A109.4
O7—P2—O4105.19 (8)C1—C5—H5A109.4
P1—O1—Co1136.65 (7)N1—C5—H5B109.4
P1—O2—H2O2109.5C1—C5—H5B109.4
P1—O4—P2132.91 (7)H5A—C5—H5B108.0
O3—P1—O1—Co1132.63 (10)O7—P2—O5—Co1−91.76 (11)
O2—P1—O1—Co1−103.92 (11)O4—P2—O5—Co124.54 (12)
O4—P1—O1—Co19.04 (13)O1i—Co1—O5—P2175.43 (10)
O1i—Co1—O1—P1112.8 (17)O1—Co1—O5—P2−4.57 (10)
O1Wi—Co1—O1—P1−109.69 (11)O1Wi—Co1—O5—P281.45 (10)
O1W—Co1—O1—P170.31 (11)O1W—Co1—O5—P2−98.55 (10)
O5—Co1—O1—P1−15.56 (11)O5i—Co1—O5—P2−39 (100)
O5i—Co1—O1—P1164.44 (11)C4—C1—C2—C31.9 (3)
O1—P1—O4—P223.46 (15)C5—C1—C2—C3−179.98 (16)
O3—P1—O4—P2−104.38 (13)C1—C2—C3—C2ii−0.95 (14)
O2—P1—O4—P2142.97 (12)C2—C1—C4—C1ii−0.93 (14)
O5—P2—O4—P1−38.26 (15)C5—C1—C4—C1ii−179.09 (18)
O6—P2—O4—P1−164.55 (12)C2—C1—C5—N1−104.4 (2)
O7—P2—O4—P182.55 (13)C4—C1—C5—N173.8 (2)
O6—P2—O5—Co1142.47 (8)
D—H···AD—HH···AD···AD—H···A
O2—H2O2···O6iii0.821.742.5574 (18)172
O7—H7···O3iv0.821.742.5268 (18)160
O1W—H1W1···O6iii0.84 (1)1.99 (1)2.8289 (17)174 (2)
O1W—H2W1···O3v0.85 (1)1.94 (1)2.7891 (17)174 (2)
O2W—H1W2···O3vi0.85 (1)2.15 (1)2.972 (2)162 (2)
O2W—H2W2···O6ii0.86 (1)2.12 (1)2.946 (2)163 (2)
N1—H1A···O2iii0.892.222.9694 (18)142
N1—H1A···O2Wvii0.892.362.969 (3)126
N1—H1B···O7v0.892.012.8893 (18)167
N1—H1C···O50.891.992.8701 (19)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2O2⋯O6i 0.821.742.5574 (18)172
O7—H7⋯O3ii 0.821.742.5268 (18)160
O1W—H1W1⋯O6i 0.84 (1)1.99 (1)2.8289 (17)174 (2)
O1W—H2W1⋯O3iii 0.85 (1)1.94 (1)2.7891 (17)174 (2)
O2W—H1W2⋯O3iv 0.85 (1)2.15 (1)2.972 (2)162 (2)
O2W—H2W2⋯O6v 0.86 (1)2.12 (1)2.946 (2)163 (2)
N1—H1A⋯O2i 0.892.222.9694 (18)142
N1—H1A⋯O2W vi 0.892.362.969 (3)126
N1—H1B⋯O7iii 0.892.012.8893 (18)167
N1—H1C⋯O50.891.992.8701 (19)171

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

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