Literature DB >> 24098171

catena-Poly[[tri-aqua-copper(II)]-μ-5-carb-oxy-benzene-1,3-di-carboxyl-ato-κ(2) O (1):O (3)].

Yu-Hong Ma1, Pi-Zhuang Ma, Ting Yao, Jing-Tuan Hao.   

Abstract

In the title complex, [Cu(C9H4O6)(H2O)3] n , the Cu(II) cation exhibits a distorted square-pyramidal coordination geometry involving five O atoms from two monodentate 5-carb-oxy-benzene-1,3-di-carboxyl-ate anions and three water mol-ecules. The 5-carb-oxy-benzene-1,3-di-carboxyl-ate anions bridge Cu(II) cations into zigzag polymeric chains running along the b-axis direction. These chains are further linked by O-H⋯O hydrogen bonds between coordinating water mol-ecules or carboxyl groups and carboxylate groups into a three-dimensional supra-molecular architecture. In the crystal, π-π stacking is observed between parallel benzene rings of adjacent chains, the centroid-centroid distances being 3.584 (3) and 3.684 (3) Å.

Entities:  

Year:  2013        PMID: 24098171      PMCID: PMC3790349          DOI: 10.1107/S1600536813024781

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to complexes derived from 1,3,5-benzene­tri­carb­oxy­lic acid and for related structures, see: Lei et al. (2012 ▶); Liu (2012 ▶); Yao & Yuan (2011 ▶).

Experimental

Crystal data

[Cu(C9H4O6)(H2O)3] M = 325.71 Monoclinic, a = 6.8551 (14) Å b = 18.892 (4) Å c = 10.716 (3) Å β = 126.87 (2)° V = 1110.2 (5) Å3 Z = 4 Mo Kα radiation μ = 2.01 mm−1 T = 293 K 0.24 × 0.21 × 0.21 mm

Data collection

Rigaku SCXmini diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.644, T max = 0.677 9530 measured reflections 1957 independent reflections 1744 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.083 S = 1.01 1957 reflections 193 parameters 10 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.42 e Å−3 Δρmin = −0.47 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPII (Johnson, 1976 ▶) and DIAMOND (Brandenburg, 1999 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813024781/xu5736sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813024781/xu5736Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C9H4O6)(H2O)3]F(000) = 660
Mr = 325.71Dx = 1.949 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 10073 reflections
a = 6.8551 (14) Åθ = 3.2–27.5°
b = 18.892 (4) ŵ = 2.01 mm1
c = 10.716 (3) ÅT = 293 K
β = 126.87 (2)°Block, blue
V = 1110.2 (5) Å30.24 × 0.21 × 0.21 mm
Z = 4
Rigaku SCXmini diffractometer1957 independent reflections
Radiation source: fine-focus sealed tube1744 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.047
ω scansθmax = 25.0°, θmin = 3.2°
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)h = −8→8
Tmin = 0.644, Tmax = 0.677k = −22→22
9530 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.040Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.083H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0257P)2 + 3.7798P] where P = (Fo2 + 2Fc2)/3
1957 reflections(Δ/σ)max = 0.001
193 parametersΔρmax = 0.42 e Å3
10 restraintsΔρmin = −0.47 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.88938 (8)0.72640 (2)0.67913 (5)0.01706 (15)
O11.0451 (6)0.87364 (14)0.7671 (3)0.0342 (7)
O20.7879 (5)0.81134 (12)0.5539 (3)0.0218 (6)
O30.2513 (5)0.91554 (14)0.0486 (3)0.0310 (7)
O40.2713 (6)1.02917 (15)0.0054 (3)0.0460 (9)
O51.0069 (5)1.13796 (13)0.7111 (3)0.0235 (6)
O60.7413 (5)1.18913 (13)0.4807 (3)0.0258 (6)
O2W1.1364 (6)0.71108 (15)0.6410 (4)0.0398 (8)
O3W0.6921 (6)0.75211 (17)0.7518 (3)0.0367 (7)
O1W0.5840 (5)0.67089 (15)0.4599 (3)0.0337 (7)
C20.7775 (6)0.93545 (17)0.5254 (4)0.0144 (7)
C10.8790 (7)0.86999 (18)0.6244 (4)0.0171 (8)
C90.8375 (7)1.13575 (18)0.5656 (4)0.0174 (8)
C70.8509 (6)1.00280 (18)0.5912 (4)0.0148 (7)
H70.96421.00780.69860.018*
C50.5841 (7)1.05491 (18)0.3357 (4)0.0169 (8)
H50.51911.09490.27260.020*
C30.6077 (6)0.92832 (18)0.3648 (4)0.0160 (8)
H30.55870.88340.32080.019*
C40.5101 (7)0.98796 (18)0.2688 (4)0.0165 (8)
C80.3348 (7)0.98117 (19)0.0959 (4)0.0223 (8)
C60.7546 (6)1.06249 (18)0.4962 (4)0.0150 (7)
H10.167 (6)0.915 (2)−0.0485 (13)0.023*
H2WA1.132 (7)0.7397 (13)0.579 (4)0.023*
H3WB0.715 (6)0.746 (2)0.836 (2)0.023*
H2WB1.166 (7)0.6699 (7)0.628 (4)0.023*
H1WA0.439 (3)0.6782 (16)0.424 (4)0.023*
H3WA0.575 (5)0.7788 (17)0.691 (3)0.023*
H1WB0.619 (6)0.6279 (7)0.475 (4)0.023*
U11U22U33U12U13U23
Cu10.0235 (3)0.0090 (2)0.0143 (2)0.00247 (19)0.00896 (19)0.00336 (18)
O10.0463 (19)0.0200 (15)0.0137 (14)0.0008 (13)0.0059 (13)0.0007 (11)
O20.0280 (14)0.0083 (12)0.0176 (13)−0.0011 (11)0.0074 (12)0.0014 (10)
O30.0441 (18)0.0208 (14)0.0097 (13)−0.0087 (13)0.0063 (13)−0.0049 (11)
O40.068 (2)0.0180 (15)0.0167 (16)−0.0039 (15)0.0064 (16)0.0040 (13)
O50.0303 (15)0.0119 (13)0.0153 (14)−0.0014 (11)0.0068 (12)−0.0034 (10)
O60.0296 (15)0.0119 (13)0.0257 (15)−0.0008 (11)0.0112 (13)0.0036 (11)
O2W0.056 (2)0.0206 (16)0.066 (2)0.0127 (15)0.0494 (19)0.0162 (15)
O3W0.0430 (19)0.0456 (19)0.0305 (17)0.0199 (15)0.0270 (16)0.0153 (14)
O1W0.0320 (17)0.0236 (15)0.0294 (16)−0.0021 (13)0.0098 (14)−0.0048 (13)
C20.0169 (18)0.0100 (17)0.0149 (18)−0.0020 (14)0.0088 (15)−0.0020 (14)
C10.023 (2)0.0138 (18)0.0140 (19)0.0014 (15)0.0103 (17)0.0002 (14)
C90.0220 (19)0.0128 (18)0.022 (2)−0.0017 (15)0.0152 (17)−0.0031 (15)
C70.0182 (19)0.0148 (18)0.0100 (17)0.0004 (14)0.0078 (15)0.0002 (14)
C50.025 (2)0.0094 (17)0.0167 (19)0.0022 (15)0.0124 (16)0.0014 (14)
C30.0208 (19)0.0088 (17)0.0180 (19)−0.0018 (14)0.0114 (16)−0.0021 (14)
C40.0184 (18)0.016 (2)0.0131 (18)−0.0013 (15)0.0084 (15)−0.0009 (14)
C80.028 (2)0.0137 (19)0.017 (2)−0.0002 (16)0.0089 (17)−0.0029 (16)
C60.0161 (18)0.0126 (17)0.0148 (18)−0.0025 (14)0.0085 (15)−0.0024 (14)
Cu1—O21.934 (2)O3W—H3WA0.832 (10)
Cu1—O5i1.917 (2)O1W—H1WA0.836 (10)
Cu1—O1W2.258 (3)O1W—H1WB0.834 (10)
Cu1—O2W1.987 (3)C2—C31.390 (5)
Cu1—O3W1.984 (3)C2—C71.394 (5)
O1—C11.245 (4)C2—C11.501 (5)
O2—C11.273 (4)C9—C61.511 (5)
O3—C81.332 (4)C7—C61.392 (5)
O3—H10.833 (10)C7—H70.9300
O4—C81.202 (5)C5—C61.391 (5)
O5—C91.268 (4)C5—C41.391 (5)
O5—Cu1ii1.917 (2)C5—H50.9300
O6—C91.249 (4)C3—C41.396 (5)
O2W—H2WA0.840 (10)C3—H30.9300
O2W—H2WB0.838 (10)C4—C81.491 (5)
O3W—H3WB0.832 (10)
O5i—Cu1—O2174.44 (11)O1—C1—O2122.6 (3)
O5i—Cu1—O3W93.54 (12)O1—C1—C2121.1 (3)
O2—Cu1—O3W91.33 (12)O2—C1—C2116.3 (3)
O5i—Cu1—O2W87.19 (12)O6—C9—O5124.2 (3)
O2—Cu1—O2W88.53 (12)O6—C9—C6120.2 (3)
O3W—Cu1—O2W169.17 (15)O5—C9—C6115.6 (3)
O5i—Cu1—O1W90.26 (11)C6—C7—C2120.0 (3)
O2—Cu1—O1W86.59 (11)C6—C7—H7120.0
O3W—Cu1—O1W95.58 (13)C2—C7—H7120.0
O2W—Cu1—O1W95.22 (14)C6—C5—C4120.5 (3)
C1—O2—Cu1117.8 (2)C6—C5—H5119.8
C8—O3—H1108 (3)C4—C5—H5119.8
C9—O5—Cu1ii120.8 (2)C2—C3—C4120.6 (3)
Cu1—O2W—H2WA116 (2)C2—C3—H3119.7
Cu1—O2W—H2WB120 (3)C4—C3—H3119.7
H2WA—O2W—H2WB111.3 (17)C5—C4—C3119.3 (3)
Cu1—O3W—H3WB132 (2)C5—C4—C8119.4 (3)
Cu1—O3W—H3WA114 (2)C3—C4—C8121.3 (3)
H3WB—O3W—H3WA113.6 (18)O4—C8—O3122.0 (3)
Cu1—O1W—H1WA120 (3)O4—C8—C4124.7 (3)
Cu1—O1W—H1WB106 (3)O3—C8—C4113.3 (3)
H1WA—O1W—H1WB112.3 (18)C5—C6—C7119.9 (3)
C3—C2—C7119.7 (3)C5—C6—C9119.5 (3)
C3—C2—C1119.0 (3)C7—C6—C9120.6 (3)
C7—C2—C1121.4 (3)
O5i—Cu1—O2—C1−135.3 (11)C6—C5—C4—C30.4 (5)
O3W—Cu1—O2—C173.6 (3)C6—C5—C4—C8−177.5 (3)
O2W—Cu1—O2—C1−95.6 (3)C2—C3—C4—C5−0.2 (5)
O1W—Cu1—O2—C1169.1 (3)C2—C3—C4—C8177.8 (3)
Cu1—O2—C1—O16.9 (5)C5—C4—C8—O49.3 (6)
Cu1—O2—C1—C2−174.0 (2)C3—C4—C8—O4−168.6 (4)
C3—C2—C1—O1174.3 (4)C5—C4—C8—O3−170.6 (3)
C7—C2—C1—O1−5.3 (5)C3—C4—C8—O311.5 (5)
C3—C2—C1—O2−4.8 (5)C4—C5—C6—C7−0.5 (5)
C7—C2—C1—O2175.5 (3)C4—C5—C6—C9178.2 (3)
Cu1ii—O5—C9—O66.7 (5)C2—C7—C6—C50.3 (5)
Cu1ii—O5—C9—C6−173.7 (2)C2—C7—C6—C9−178.4 (3)
C3—C2—C7—C6−0.1 (5)O6—C9—C6—C54.9 (5)
C1—C2—C7—C6179.6 (3)O5—C9—C6—C5−174.7 (3)
C7—C2—C3—C40.0 (5)O6—C9—C6—C7−176.3 (3)
C1—C2—C3—C4−179.7 (3)O5—C9—C6—C74.0 (5)
D—H···AD—HH···AD···AD—H···A
O3—H1···O1iii0.83 (1)1.80 (2)2.570 (4)153 (4)
O1W—H1WA···O1iv0.84 (1)2.37 (2)3.077 (4)142 (3)
O1W—H1WB···O4v0.83 (1)1.97 (1)2.801 (4)171 (4)
O2W—H2WA···O6vi0.84 (1)1.91 (2)2.697 (4)155 (4)
O2W—H2WB···O3vii0.84 (1)2.07 (2)2.875 (4)162 (3)
O3W—H3WA···O6viii0.83 (1)1.92 (2)2.717 (4)161 (4)
O3W—H3WB···O2ix0.83 (1)2.33 (2)3.130 (4)161 (3)
Table 1

Selected bond lengths (Å)

Cu1—O21.934 (2)
Cu1—O5i 1.917 (2)
Cu1—O1W 2.258 (3)
Cu1—O2W 1.987 (3)
Cu1—O3W 1.984 (3)

Symmetry code: (i) .

Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H1⋯O1ii 0.83 (1)1.80 (2)2.570 (4)153 (4)
O1W—H1WA⋯O1iii 0.84 (1)2.37 (2)3.077 (4)142 (3)
O1W—H1WB⋯O4iv 0.83 (1)1.97 (1)2.801 (4)171 (4)
O2W—H2WA⋯O6v 0.84 (1)1.91 (2)2.697 (4)155 (4)
O2W—H2WB⋯O3vi 0.84 (1)2.07 (2)2.875 (4)162 (3)
O3W—H3WA⋯O6vii 0.83 (1)1.92 (2)2.717 (4)161 (4)
O3W—H3WB⋯O2viii 0.83 (1)2.33 (2)3.130 (4)161 (3)

Symmetry codes: (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) ; (viii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  catena-Poly[[triaqua-nickel(II)]-μ-5-carb-oxy-benzene-1,3-dicarboxyl-ato-κO:O].

Authors:  Xing-Jun Yao; Qian Yuan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-14

3.  Poly[[diaqua-bis-(μ(3)-3,5-dicarb-oxy-benzo-ato-κ(3)O(1):O(3):O(5))bis-(μ(3)-5-carb-oxy-ben-zene-1,3-dicarboxyl-ato-κ(3)O(1):O(3):O(5))tetrakis(methylformamide-κO)tri-man-ganese(II)] dimethyl-formamide tetra-solvate].

Authors:  Jing-Wei Lei; Cai-Xia Xie; Huai-Xia Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-04-28

4.  Poly[(μ(4)-benzene-1,3,5-tricarboxyl-ato)bis-(N,N-dimethyl-acetamide)-terbium(III)].

Authors:  Kun Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-14
  4 in total

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