Literature DB >> 24098167

Bis[1-meth-oxy-2,2,2-tris-(pyrazol-1-yl-κN (2))ethane]-nickel(II) bis-(tri-fluoro-methane-sulfonate) dihydrate.

Ganna Lyubartseva1, Sean Parkin, Uma Prasad Mallik.   

Abstract

In the title salt, [n class="Chemical">Ni(C12H14N6O)2](CF3SO3)2·2H2O, the Ni(II) cation is located on an inversion centre and is coordinated by six N atoms from two tridentate 1-meth-oxy-2,2,2-tris-(pyrazol-1-yl)ethane ligands in a distorted octa-hedral geometry. The Ni-N distances range from 2.0594 (12) to 2.0664 (12) Å, intra-ligand N-Ni-N angles range from 84.59 (5) to 86.06 (5)°, and adjacent inter-ligand N-Ni-N angles range between 93.94 (5) and 95.41 (5)°. In the crystal, inversion-related pyrazole rings are π-π stacked, with an inter-planar spacing of 3.4494 (18) Å, forming chains that propagate parallel to the a-axis direction. Inter-molecular O-H⋯O hydrogen bonds are present between water mol-ecules and tri-fluoro-methane-sulfonate anions.

Entities:  

Year:  2013        PMID: 24098167      PMCID: PMC3790345          DOI: 10.1107/S1600536813024252

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Pyrazole-based tridentate ligands are drawing more attention because of their topology and nature of n class="Species">donor atoms, see: Paulo et al. (2004 ▶); Bigmore et al. (2005 ▶). For the ligand synthesis, see: Maria et al. (2007 ▶). The compound reported here was prepared as part of our ongoing research effort to study nitro­gen-donor tridentate scorpionate ligands coordinated to nickel, see: Lyubartseva et al. (2011 ▶, 2012 ▶); Lyubartseva & Parkin (2009 ▶).

Experimental

Crystal data

[Ni(C12n class="Species">H14N6O)2](CF3O3S)2·2H2O M = 909.46 Triclinic, a = 8.5582 (2) Å b = 9.6515 (2) Å c = 12.2347 (2) Å α = 110.399 (1)° β = 103.665 (1)° γ = 97.317 (1)° V = 895.66 (3) Å3 Z = 1 Mo Kα radiation μ = 0.76 mm−1 T = 90 K 0.26 × 0.22 × 0.15 mm

Data collection

Nonius KappaCCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2008a ▶) T min = 0.760, T max = 0.862 25573 measured reflections 4095 independent reflections 3708 reflections with I > 2σ(I) R int = 0.023

Refinement

R[F 2 > 2σ(F 2)] = 0.029 wR(F 2) = 0.072 S = 1.07 4095 reflections 266 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.47 e Å−3 Δρmin = −0.49 e Å−3 Data collection: COLLECT (Nonius, 1998 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DEn class="Chemical">NZO-SMN (Otwinowski & Minor, 1997 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008b ▶); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008b ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008b ▶); software used to prepare material for publication: SHELXL2013. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813024252/tk5252sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813024252/tk5252Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C12H14N6O)2](CF3O3S)2·2H2OZ = 1
Mr = 909.46F(000) = 466
Triclinic, P1Dx = 1.686 Mg m3
a = 8.5582 (2) ÅMo Kα radiation, λ = 0.71073 Å
b = 9.6515 (2) ÅCell parameters from 25674 reflections
c = 12.2347 (2) Åθ = 1.0–27.5°
α = 110.399 (1)°µ = 0.76 mm1
β = 103.665 (1)°T = 90 K
γ = 97.317 (1)°Block, pink
V = 895.66 (3) Å30.26 × 0.22 × 0.15 mm
Nonius KappaCCD diffractometer4095 independent reflections
Radiation source: fine-focus sealed-tube3708 reflections with I > 2σ(I)
Detector resolution: 9.1 pixels mm-1Rint = 0.023
φ and ω scans at fixed χ = 55°θmax = 27.5°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 2008a)h = −11→11
Tmin = 0.760, Tmax = 0.862k = −12→12
25573 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.029Hydrogen site location: difference Fourier map
wR(F2) = 0.072H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0311P)2 + 0.6676P] where P = (Fo2 + 2Fc2)/3
4095 reflections(Δ/σ)max < 0.001
266 parametersΔρmax = 0.47 e Å3
0 restraintsΔρmin = −0.49 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/Ueq
Ni10.50000.50000.50000.01222 (8)
N10.44622 (15)0.29426 (14)0.35443 (11)0.0145 (3)
N20.30215 (15)0.25366 (14)0.26196 (11)0.0130 (2)
C10.52676 (19)0.18620 (17)0.31824 (14)0.0173 (3)
H10.63150.18390.36490.021*
C20.43694 (19)0.07609 (18)0.20223 (15)0.0191 (3)
H20.4683−0.01170.15630.023*
C30.29420 (19)0.12165 (17)0.16891 (14)0.0167 (3)
H30.20620.07070.09480.020*
N30.39074 (15)0.58147 (14)0.37338 (11)0.0149 (3)
N40.24408 (15)0.49654 (14)0.28723 (11)0.0130 (2)
C40.4154 (2)0.71338 (18)0.36109 (14)0.0173 (3)
H40.50850.79550.40930.021*
C50.2853 (2)0.71481 (18)0.26739 (15)0.0192 (3)
H50.27380.79530.24070.023*
C60.17837 (19)0.57573 (18)0.22245 (14)0.0169 (3)
H60.07720.54110.15810.020*
N50.26178 (15)0.43228 (14)0.50146 (11)0.0139 (2)
N60.14141 (15)0.35547 (14)0.39195 (11)0.0125 (2)
C70.19545 (19)0.41516 (17)0.58503 (14)0.0160 (3)
H70.25080.45710.67040.019*
C80.03292 (19)0.32692 (18)0.53068 (14)0.0170 (3)
H8−0.04060.29920.57080.020*
C90.00275 (18)0.28935 (17)0.40787 (14)0.0154 (3)
H9−0.09630.22850.34530.018*
C100.17782 (18)0.34450 (16)0.27853 (13)0.0127 (3)
C110.02317 (18)0.26347 (17)0.16833 (13)0.0147 (3)
H11A0.04850.26050.09280.018*
H11B−0.01370.15770.15960.018*
O1−0.10362 (13)0.34191 (12)0.18516 (10)0.0167 (2)
C12−0.25257 (19)0.26218 (19)0.08624 (15)0.0204 (3)
H12A−0.23440.25950.00950.031*
H12B−0.34130.31430.10090.031*
H12C−0.28390.15810.08070.031*
S1A0.86275 (5)0.86391 (4)0.17962 (3)0.01557 (9)
O1A0.76221 (16)0.97224 (14)0.17899 (12)0.0287 (3)
O2A0.98159 (15)0.86458 (15)0.11398 (11)0.0272 (3)
O3A0.92445 (16)0.85421 (15)0.29641 (11)0.0269 (3)
F1A0.64625 (13)0.67273 (12)−0.02656 (9)0.0292 (2)
F2A0.79191 (16)0.56755 (13)0.07329 (13)0.0497 (4)
F3A0.59605 (16)0.65956 (16)0.13326 (12)0.0500 (4)
C1A0.7161 (2)0.68201 (19)0.08608 (16)0.0220 (3)
O1W0.76122 (18)0.99331 (17)0.48585 (14)0.0368 (3)
H1W0.848 (3)1.032 (3)0.563 (3)0.055*
H2W0.812 (3)0.944 (3)0.429 (3)0.055*
U11U22U33U12U13U23
Ni10.01029 (13)0.01323 (13)0.01154 (13)0.00243 (10)0.00191 (10)0.00400 (10)
N10.0101 (6)0.0164 (6)0.0136 (6)0.0031 (5)0.0010 (5)0.0037 (5)
N20.0102 (6)0.0146 (6)0.0119 (6)0.0027 (5)0.0019 (5)0.0037 (5)
C10.0134 (7)0.0180 (7)0.0198 (8)0.0051 (6)0.0045 (6)0.0062 (6)
C20.0162 (8)0.0165 (7)0.0214 (8)0.0050 (6)0.0065 (6)0.0029 (6)
C30.0150 (7)0.0159 (7)0.0152 (7)0.0021 (6)0.0040 (6)0.0022 (6)
N30.0117 (6)0.0157 (6)0.0142 (6)0.0005 (5)0.0012 (5)0.0050 (5)
N40.0105 (6)0.0148 (6)0.0117 (6)0.0019 (5)0.0011 (5)0.0048 (5)
C40.0173 (7)0.0164 (7)0.0186 (7)0.0025 (6)0.0063 (6)0.0070 (6)
C50.0202 (8)0.0193 (7)0.0218 (8)0.0052 (6)0.0068 (6)0.0119 (6)
C60.0160 (7)0.0210 (7)0.0159 (7)0.0065 (6)0.0043 (6)0.0095 (6)
N50.0119 (6)0.0166 (6)0.0105 (6)0.0030 (5)0.0014 (5)0.0036 (5)
N60.0104 (6)0.0146 (6)0.0106 (6)0.0017 (5)0.0021 (5)0.0038 (5)
C70.0177 (7)0.0181 (7)0.0132 (7)0.0058 (6)0.0054 (6)0.0061 (6)
C80.0164 (7)0.0191 (7)0.0189 (8)0.0047 (6)0.0081 (6)0.0093 (6)
C90.0120 (7)0.0151 (7)0.0189 (7)0.0023 (5)0.0049 (6)0.0066 (6)
C100.0113 (7)0.0141 (7)0.0127 (7)0.0036 (5)0.0039 (5)0.0047 (5)
C110.0113 (7)0.0170 (7)0.0124 (7)0.0032 (6)0.0013 (6)0.0032 (6)
O10.0108 (5)0.0193 (5)0.0157 (5)0.0048 (4)0.0002 (4)0.0039 (4)
C120.0122 (7)0.0224 (8)0.0213 (8)0.0019 (6)−0.0030 (6)0.0082 (7)
S1A0.01472 (18)0.01723 (18)0.01564 (18)0.00405 (14)0.00441 (14)0.00749 (14)
O1A0.0262 (7)0.0202 (6)0.0351 (7)0.0104 (5)0.0029 (5)0.0081 (5)
O2A0.0200 (6)0.0363 (7)0.0205 (6)−0.0021 (5)0.0088 (5)0.0067 (5)
O3A0.0297 (7)0.0335 (7)0.0178 (6)0.0073 (5)0.0035 (5)0.0128 (5)
F1A0.0236 (5)0.0295 (5)0.0251 (5)−0.0015 (4)−0.0035 (4)0.0091 (4)
F2A0.0461 (8)0.0180 (5)0.0645 (9)0.0101 (5)−0.0122 (6)0.0102 (6)
F3A0.0399 (7)0.0563 (8)0.0458 (7)−0.0180 (6)0.0195 (6)0.0166 (6)
C1A0.0208 (8)0.0204 (8)0.0266 (9)0.0036 (6)0.0052 (7)0.0129 (7)
O1W0.0266 (7)0.0383 (8)0.0339 (8)0.0027 (6)0.0103 (6)0.0014 (6)
Ni1—N12.0594 (12)N5—N61.3664 (17)
Ni1—N1i2.0594 (12)N6—C91.3625 (19)
Ni1—N3i2.0602 (13)N6—C101.4643 (18)
Ni1—N32.0602 (13)C7—C81.403 (2)
Ni1—N52.0664 (12)C7—H70.9500
Ni1—N5i2.0664 (12)C8—C91.367 (2)
N1—C11.3283 (19)C8—H80.9500
N1—N21.3648 (17)C9—H90.9500
N2—C31.3617 (19)C10—C111.529 (2)
N2—C101.4689 (18)C11—O11.4140 (18)
C1—C21.400 (2)C11—H11A0.9900
C1—H10.9500C11—H11B0.9900
C2—C31.370 (2)O1—C121.4331 (18)
C2—H20.9500C12—H12A0.9800
C3—H30.9500C12—H12B0.9800
N3—C41.330 (2)C12—H12C0.9800
N3—N41.3671 (17)S1A—O1A1.4371 (12)
N4—C61.3600 (19)S1A—O2A1.4378 (12)
N4—C101.4618 (18)S1A—O3A1.4418 (12)
C4—C51.402 (2)S1A—C1A1.8237 (17)
C4—H40.9500F1A—C1A1.333 (2)
C5—C61.370 (2)F2A—C1A1.332 (2)
C5—H50.9500F3A—C1A1.322 (2)
C6—H60.9500O1W—H1W0.97 (3)
N5—C71.3278 (19)O1W—H2W0.94 (3)
N1—Ni1—N1i180.0C7—N5—Ni1134.47 (10)
N1—Ni1—N3i93.94 (5)N6—N5—Ni1118.35 (9)
N1i—Ni1—N3i86.06 (5)C9—N6—N5110.86 (12)
N1—Ni1—N386.06 (5)C9—N6—C10129.46 (12)
N1i—Ni1—N393.94 (5)N5—N6—C10119.50 (12)
N3i—Ni1—N3180.0N5—C7—C8111.13 (14)
N1—Ni1—N584.59 (5)N5—C7—H7124.4
N1i—Ni1—N595.41 (5)C8—C7—H7124.4
N3i—Ni1—N595.27 (5)C9—C8—C7105.44 (13)
N3—Ni1—N584.73 (5)C9—C8—H8127.3
N1—Ni1—N5i95.41 (5)C7—C8—H8127.3
N1i—Ni1—N5i84.59 (5)N6—C9—C8107.16 (13)
N3i—Ni1—N5i84.73 (5)N6—C9—H9126.4
N3—Ni1—N5i95.27 (5)C8—C9—H9126.4
N5—Ni1—N5i180.00 (7)N4—C10—N6109.51 (11)
C1—N1—N2105.55 (12)N4—C10—N2109.13 (11)
C1—N1—Ni1135.27 (11)N6—C10—N2108.63 (11)
N2—N1—Ni1118.89 (9)N4—C10—C11111.11 (12)
C3—N2—N1110.80 (12)N6—C10—C11110.71 (12)
C3—N2—C10129.99 (12)N2—C10—C11107.69 (11)
N1—N2—C10118.99 (11)O1—C11—C10109.35 (12)
N1—C1—C2111.08 (14)O1—C11—H11A109.8
N1—C1—H1124.5C10—C11—H11A109.8
C2—C1—H1124.5O1—C11—H11B109.8
C3—C2—C1105.45 (14)C10—C11—H11B109.8
C3—C2—H2127.3H11A—C11—H11B108.3
C1—C2—H2127.3C11—O1—C12110.04 (11)
N2—C3—C2107.11 (13)O1—C12—H12A109.5
N2—C3—H3126.4O1—C12—H12B109.5
C2—C3—H3126.4H12A—C12—H12B109.5
C4—N3—N4105.69 (12)O1—C12—H12C109.5
C4—N3—Ni1135.09 (11)H12A—C12—H12C109.5
N4—N3—Ni1118.51 (9)H12B—C12—H12C109.5
C6—N4—N3110.71 (12)O1A—S1A—O2A114.77 (8)
C6—N4—C10129.53 (13)O1A—S1A—O3A114.93 (8)
N3—N4—C10119.72 (12)O2A—S1A—O3A114.87 (8)
N3—C4—C5110.81 (14)O1A—S1A—C1A103.12 (8)
N3—C4—H4124.6O2A—S1A—C1A103.04 (8)
C5—C4—H4124.6O3A—S1A—C1A103.80 (8)
C6—C5—C4105.58 (14)F3A—C1A—F2A108.54 (15)
C6—C5—H5127.2F3A—C1A—F1A107.47 (14)
C4—C5—H5127.2F2A—C1A—F1A106.24 (14)
N4—C6—C5107.21 (14)F3A—C1A—S1A112.04 (12)
N4—C6—H6126.4F2A—C1A—S1A110.88 (12)
C5—C6—H6126.4F1A—C1A—S1A111.42 (11)
C7—N5—N6105.40 (12)H1W—O1W—H2W104 (2)
C1—N1—N2—C3−0.31 (16)N3—N4—C10—N663.30 (16)
Ni1—N1—N2—C3174.45 (10)C6—N4—C10—N2126.87 (15)
C1—N1—N2—C10174.92 (12)N3—N4—C10—N2−55.48 (16)
Ni1—N1—N2—C10−10.32 (16)C6—N4—C10—C118.3 (2)
N2—N1—C1—C20.58 (17)N3—N4—C10—C11−174.09 (12)
Ni1—N1—C1—C2−172.90 (11)C9—N6—C10—N4132.03 (15)
N1—C1—C2—C3−0.63 (19)N5—N6—C10—N4−53.32 (16)
N1—N2—C3—C2−0.07 (17)C9—N6—C10—N2−108.88 (16)
C10—N2—C3—C2−174.63 (14)N5—N6—C10—N265.78 (16)
C1—C2—C3—N20.41 (18)C9—N6—C10—C119.2 (2)
C4—N3—N4—C6−0.20 (16)N5—N6—C10—C11−176.17 (12)
Ni1—N3—N4—C6171.53 (10)C3—N2—C10—N4−120.06 (16)
C4—N3—N4—C10−178.26 (12)N1—N2—C10—N465.75 (16)
Ni1—N3—N4—C10−6.53 (16)C3—N2—C10—N6120.60 (16)
N4—N3—C4—C50.07 (17)N1—N2—C10—N6−53.58 (16)
Ni1—N3—C4—C5−169.62 (11)C3—N2—C10—C110.7 (2)
N3—C4—C5—C60.09 (18)N1—N2—C10—C11−173.53 (12)
N3—N4—C6—C50.26 (17)N4—C10—C11—O1−64.66 (15)
C10—N4—C6—C5178.07 (14)N6—C10—C11—O157.25 (15)
C4—C5—C6—N4−0.20 (17)N2—C10—C11—O1175.87 (11)
C7—N5—N6—C9−1.01 (16)C10—C11—O1—C12−176.45 (12)
Ni1—N5—N6—C9166.00 (10)O1A—S1A—C1A—F3A−60.94 (14)
C7—N5—N6—C10−176.59 (12)O2A—S1A—C1A—F3A179.35 (13)
Ni1—N5—N6—C10−9.58 (16)O3A—S1A—C1A—F3A59.25 (14)
N6—N5—C7—C80.35 (17)O1A—S1A—C1A—F2A177.62 (13)
Ni1—N5—C7—C8−163.56 (11)O2A—S1A—C1A—F2A57.91 (14)
N5—C7—C8—C90.41 (18)O3A—S1A—C1A—F2A−62.19 (14)
N5—N6—C9—C81.28 (17)O1A—S1A—C1A—F1A59.51 (14)
C10—N6—C9—C8176.30 (14)O2A—S1A—C1A—F1A−60.20 (13)
C7—C8—C9—N6−1.00 (17)O3A—S1A—C1A—F1A179.70 (12)
C6—N4—C10—N6−114.34 (16)
D—H···AD—HH···AD···AD—H···A
O1W—H2W···O3A0.94 (3)2.06 (3)2.994 (2)174 (2)
O1W—H1W···O3Aii0.97 (3)2.12 (3)3.0613 (19)163 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1W—H2W⋯O3A 0.94 (3)2.06 (3)2.994 (2)174 (2)
O1W—H1W⋯O3A i 0.97 (3)2.12 (3)3.0613 (19)163 (2)

Symmetry code: (i) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Coordination, organometallic and related chemistry of tris(pyrazolyl)methane ligands.

Authors:  Helen R Bigmore; Sally C Lawrence; Philip Mountford; Cara S Tredget
Journal:  Dalton Trans       Date:  2005-01-18       Impact factor: 4.390

3.  Bis(tripyrazol-1-ylmethane)nickel(II) tetra-cyanidonickelate(II) dihydrate.

Authors:  Ganna Lyubartseva; Sean Parkin
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-11-07

4.  Rhenium and technetium tricarbonyl complexes anchored by pyrazole-based tripods: novel lead structures for the design of myocardial imaging agents.

Authors:  Leonor Maria; Susana Cunha; Margarida Videira; Lurdes Gano; António Paulo; Isabel C Santos; Isabel Santos
Journal:  Dalton Trans       Date:  2007-06-06       Impact factor: 4.390

5.  Bis[tris-(1H-pyrazol-1-yl-κN)methane]-nickel(II) bis-{[tris-(1H-pyrazol-1-yl-κN)methane]-tris-(thio-cyanato-κN)nickelate(II)} methanol disolvate.

Authors:  Ganna Lyubartseva; Sean Parkin; Uma Prasad Mallik
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-11-05

6.  Tetra-ethyl-ammonium tris-(thio-cyanato-κN)[tris-(1H-pyrazol-1-yl-κN(2))methane]-nickelate(II).

Authors:  Ganna Lyubartseva; Sean Parkin; Uma Prasad Mallik; Hee Kyung Jeon
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-13
  6 in total
  2 in total

1.  Crystal structure of 1-meth-oxy-2,2,2-tris-(pyrazol-1-yl)ethane.

Authors:  Ganna Lyubartseva; Sean Parkin; Morgan D Coleman; Uma Prasad Mallik
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-08-23

2.  Crystal structure at 100 K of bis-[1,2-bis-(di-phenyl-phosphan-yl)ethane]-nickel(II) bis-(tri-fluoro-methane-sulfonate): a possible negative thermal expansion mol-ecular material.

Authors:  Cristian A Cano-Benítez; Alejandro J Metta-Magaña; Álvaro Duarte-Ruiz
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-10-31
  2 in total

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