Literature DB >> 24096348

Minireview: applied structural bioinformatics in proteomics.

Yee Siew Choong1, Gee Jun Tye, Theam Soon Lim.   

Abstract

The limited sequence similarity of protein sequences with known structures has led to an indispensable need for computational technology to predict their structures. Structural bioinformatics (SB) has become integral in elucidating the sequence-structure-function relationship of a protein. This report focuses on the applications of SB within the context of protein engineering including its limitation and future challenges.

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Year:  2013        PMID： 24096348     DOI： 10.1007/s10930-013-9514-1

Source DB:  PubMed          Journal:  Protein J        ISSN： 1572-3887            Impact factor:   2.371


  69 in total

1.  Insilico study of the A(2A)R-D (2)R kinetics and interfacial contact surface for heteromerization.

Authors:  Amresh Prakash; Pratibha Mehta Luthra
Journal:  Amino Acids       Date:  2012-01-26       Impact factor: 3.520

2.  A hot-spot motif characterizes the interface between a designed ankyrin-repeat protein and its target ligand.

Authors:  Luthur Siu-Lun Cheung; Manu Kanwar; Marc Ostermeier; Konstantinos Konstantopoulos
Journal:  Biophys J       Date:  2012-02-07       Impact factor: 4.033

3.  Charge and geometry of residues in the loop 2 β hairpin differentially affect agonist and ethanol sensitivity in glycine receptors.

Authors:  Daya I Perkins; James R Trudell; Liana Asatryan; Daryl L Davies; Ronald L Alkana
Journal:  J Pharmacol Exp Ther       Date:  2012-02-22       Impact factor: 4.030

4.  Molecular dynamics simulations of the complete satellite tobacco mosaic virus.

Authors:  Peter L Freddolino; Anton S Arkhipov; Steven B Larson; Alexander McPherson; Klaus Schulten
Journal:  Structure       Date:  2006-03       Impact factor: 5.006

5.  Conservation of gene order: a fingerprint of proteins that physically interact.

Authors:  T Dandekar; B Snel; M Huynen; P Bork
Journal:  Trends Biochem Sci       Date:  1998-09       Impact factor: 13.807

6.  AutoMap: a tool for analyzing protein-ligand recognition using multiple ligand binding modes.

Authors:  Mark Agostino; Ricardo L Mancera; Paul A Ramsland; Elizabeth Yuriev
Journal:  J Mol Graph Model       Date:  2013-01-08       Impact factor: 2.518

7.  Design of peptide affinity ligands for S-protein: a comparison of combinatorial and de novo design strategies.

Authors:  Divya Chandra; Christopher J Morrison; James Woo; Steven Cramer; Pankaj Karande
Journal:  Mol Divers       Date:  2013-03-27       Impact factor: 2.943

8.  Cluster analysis and display of genome-wide expression patterns.

Authors:  M B Eisen; P T Spellman; P O Brown; D Botstein
Journal:  Proc Natl Acad Sci U S A       Date:  1998-12-08       Impact factor: 11.205

9.  Prediction and identification of potential immunodominant epitopes in glycoproteins B, C, E, G, and I of herpes simplex virus type 2.

Authors:  Mingjie Pan; Xingsheng Wang; Jianmin Liao; Dengke Yin; Suqin Li; Ying Pan; Yao Wang; Guangyan Xie; Shumin Zhang; Yuexi Li
Journal:  Clin Dev Immunol       Date:  2012-05-09

10.  Theoretical investigation on structural, functional and epitope of a 12 kDa excretory-secretory protein from Toxoplasma gondii.

Authors:  Yap Boon Wooi Tommy; Theam Soon Lim; Rahmah Noordin; Geita Saadatnia; Yee Siew Choong
Journal:  BMC Struct Biol       Date:  2012-11-27
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