Literature DB >> 24095715

Method qualification and application of diffusion interaction parameter and virial coefficient.

Shuai Shi1, Makiko Uchida, Jason Cheung, Valentyn Antochshuk, Mohammed Shameem.   

Abstract

This research focused on evaluation and application of two methods in studying weak protein-protein interactions, i.e. diffusion interaction parameter (KD) and second virial coefficient (B22), both of which are first-order coefficients of protein interactions. Although the plate-based KD method successfully distinguished KD values with relatively large difference in a pH ranging study, it failed to make a consistent statistical decision to determine close interactions as shown by the comprehensive ANOVA analysis. We also validated the DLS-based B22 method by using a model protein lysozyme. The dramatic change of solution appearance for lysozyme as a function of NaCl concentration highlighted the importance of B22 in understanding protein interactions. Moreover, B22 measurement for a MAb fragment suggested a more repulsive protein interaction in histidine buffer than in citrate buffer. The coefficient of variation was <10% when B22 was on an order of magnitude of 10(-4) L mmol/g(2) in contrast to >30% when it approached 10(-5) L mmol/g(2). In this research, we also made an attempt to study protein-protein interactions in concentrated MAb fragment solutions (e.g. >50 mg/mL). Our data suggested that such interactions could be empirically modeled by high-order virial expansions.
Copyright © 2013 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  ANOVA; Diffusion interaction parameter; Protein–protein interaction; Variability; Virial coefficient

Mesh:

Substances:

Year:  2013        PMID: 24095715     DOI: 10.1016/j.ijbiomac.2013.09.033

Source DB:  PubMed          Journal:  Int J Biol Macromol        ISSN: 0141-8130            Impact factor:   6.953


  5 in total

1.  Protein aggregation and mitigation strategy in low pH viral inactivation for monoclonal antibody purification.

Authors:  Weixin Jin; Zizhuo Xing; Yuanli Song; Chao Huang; Xuankuo Xu; Sanchayita Ghose; Zheng Jian Li
Journal:  MAbs       Date:  2019-09-02       Impact factor: 5.857

2.  Challenges in Predicting Protein-Protein Interactions from Measurements of Molecular Diffusivity.

Authors:  Lea L Sorret; Madison A DeWinter; Daniel K Schwartz; Theodore W Randolph
Journal:  Biophys J       Date:  2016-11-01       Impact factor: 4.033

3.  Use of dynamic light scattering and small-angle X-ray scattering to characterize new surfactants in solution conditions for membrane-protein crystallization.

Authors:  Mohamed Dahani; Laurie Anne Barret; Simon Raynal; Colette Jungas; Pétra Pernot; Ange Polidori; Françoise Bonneté
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-06-27       Impact factor: 1.056

4.  Development of a high-throughput solubility screening assay for use in antibody discovery.

Authors:  Qing Chai; James Shih; Caroline Weldon; Samantha Phan; Bryan E Jones
Journal:  MAbs       Date:  2019-03-26       Impact factor: 5.857

5.  Use of Debye-Hückel-Henry charge measurements in early antibody development elucidates effects of non-specific association.

Authors:  Joshua R Laber; Thomas M Laue; Dana I Filoti
Journal:  Antib Ther       Date:  2022-07-28
  5 in total

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