Literature DB >> 24090879

Creating a neural specific chromatin landscape by npBAF and nBAF complexes.

Brett T Staahl1, Gerald R Crabtree.   

Abstract

Several features make the chromatin environment of neurons likely to be different than any other cell type. These include the fact that several hundred types of neurons exist, each requiring specialized patterns of gene expression and in turn specialized chromatin landscapes. In addition, neurons have the most stable morphology of any cell type, a unique feature essential for memory. Yet these stable morphologies must allow the emergence of new stable morphologies in response to environmental influences permitting learning to occur by altered morphology and new synapse formation. Several years ago we found that neurons have specific chromatin remodeling mechanisms not present in any other cell type that are produced by combinatorial assembly of ATP-dependent chromatin remodeling complexes. The neural specific subunits are essential for normal neural development, learning and memory. Remarkably, recreating these neural specific complexes in fibroblasts leads to their conversion to neurons. Recently, the subunits of these complexes have been found to have genetically dominant roles in several human neurologic diseases. The genetic dominance of these mutations suggests that less severe mutations will contribute to phenotypic variation in human neuronally derived traits.
Copyright © 2013 Elsevier Ltd. All rights reserved.

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Year:  2013        PMID: 24090879      PMCID: PMC3878911          DOI: 10.1016/j.conb.2013.09.003

Source DB:  PubMed          Journal:  Curr Opin Neurobiol        ISSN: 0959-4388            Impact factor:   6.627


  46 in total

1.  Heterozygous missense mutations in SMARCA2 cause Nicolaides-Baraitser syndrome.

Authors:  Jeroen K J Van Houdt; Beata Anna Nowakowska; Sérgio B Sousa; Barbera D C van Schaik; Eve Seuntjens; Nelson Avonce; Alejandro Sifrim; Omar A Abdul-Rahman; Marie-José H van den Boogaard; Armand Bottani; Marco Castori; Valérie Cormier-Daire; Matthew A Deardorff; Isabel Filges; Alan Fryer; Jean-Pierre Fryns; Simone Gana; Livia Garavelli; Gabriele Gillessen-Kaesbach; Bryan D Hall; Denise Horn; Danny Huylebroeck; Jakub Klapecki; Malgorzata Krajewska-Walasek; Alma Kuechler; Matthew A Lines; Saskia Maas; Kay D Macdermot; Shane McKee; Alex Magee; Stella A de Man; Yves Moreau; Fanny Morice-Picard; Ewa Obersztyn; Jacek Pilch; Elizabeth Rosser; Nora Shannon; Irene Stolte-Dijkstra; Patrick Van Dijck; Catheline Vilain; Annick Vogels; Emma Wakeling; Dagmar Wieczorek; Louise Wilson; Orsetta Zuffardi; Antoine H C van Kampen; Koenraad Devriendt; Raoul Hennekam; Joris Robert Vermeesch
Journal:  Nat Genet       Date:  2012-02-26       Impact factor: 38.330

2.  Genome-wide analyses identify transcription factors required for proper morphogenesis of Drosophila sensory neuron dendrites.

Authors:  Jay Z Parrish; Michael D Kim; Lily Yeh Jan; Yuh Nung Jan
Journal:  Genes Dev       Date:  2006-03-17       Impact factor: 11.361

3.  Regulation of dendritic development by neuron-specific chromatin remodeling complexes.

Authors:  Jiang I Wu; Julie Lessard; Ivan A Olave; Zilong Qiu; Anirvan Ghosh; Isabella A Graef; Gerald R Crabtree
Journal:  Neuron       Date:  2007-10-04       Impact factor: 17.173

4.  Reduced transcript expression of genes affected by inherited and de novo CNVs in autism.

Authors:  Alex S Nord; Wendy Roeb; Diane E Dickel; Tom Walsh; Mary Kusenda; Kristen Lewis O'Connor; Dheeraj Malhotra; Shane E McCarthy; Sunday M Stray; Susan M Taylor; Jonathan Sebat; Bryan King; Mary-Claire King; Jon M McClellan
Journal:  Eur J Hum Genet       Date:  2011-03-30       Impact factor: 4.246

Review 5.  Roles for microRNAs in conferring robustness to biological processes.

Authors:  Margaret S Ebert; Phillip A Sharp
Journal:  Cell       Date:  2012-04-27       Impact factor: 41.582

6.  Coffin-Siris syndrome and the BAF complex: genotype-phenotype study in 63 patients.

Authors:  Gijs W E Santen; Emmelien Aten; Anneke T Vulto-van Silfhout; Caroline Pottinger; Bregje W M van Bon; Ivonne J H M van Minderhout; Ronelle Snowdowne; Christian A C van der Lans; Merel Boogaard; Margot M L Linssen; Linda Vijfhuizen; Michiel J R van der Wielen; M J Ellen Vollebregt; Martijn H Breuning; Marjolein Kriek; Arie van Haeringen; Johan T den Dunnen; Alexander Hoischen; Jill Clayton-Smith; Bert B A de Vries; Raoul C M Hennekam; Martine J van Belzen
Journal:  Hum Mutat       Date:  2013-08-30       Impact factor: 4.878

7.  An essential switch in subunit composition of a chromatin remodeling complex during neural development.

Authors:  Julie Lessard; Jiang I Wu; Jeffrey A Ranish; Mimi Wan; Monte M Winslow; Brett T Staahl; Hai Wu; Ruedi Aebersold; Isabella A Graef; Gerald R Crabtree
Journal:  Neuron       Date:  2007-07-19       Impact factor: 17.173

Review 8.  SWI/SNF complex in disorder: SWItching from malignancies to intellectual disability.

Authors:  Gijs W E Santen; Marjolein Kriek; Haico van Attikum
Journal:  Epigenetics       Date:  2012-09-25       Impact factor: 4.528

9.  The chromatin remodeling factor Bap55 functions through the TIP60 complex to regulate olfactory projection neuron dendrite targeting.

Authors:  Joy S Tea; Liqun Luo
Journal:  Neural Dev       Date:  2011-02-01       Impact factor: 3.842

10.  The neuron-specific chromatin regulatory subunit BAF53b is necessary for synaptic plasticity and memory.

Authors:  Annie Vogel-Ciernia; Dina P Matheos; Ruth M Barrett; Enikö A Kramár; Soraya Azzawi; Yuncai Chen; Christophe N Magnan; Michael Zeller; Angelina Sylvain; Jakob Haettig; Yousheng Jia; Anthony Tran; Richard Dang; Rebecca J Post; Meredith Chabrier; Alex H Babayan; Jiang I Wu; Gerald R Crabtree; Pierre Baldi; Tallie Z Baram; Gary Lynch; Marcelo A Wood
Journal:  Nat Neurosci       Date:  2013-03-24       Impact factor: 24.884

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  22 in total

1.  Neuroepigenomics: Resources, Obstacles, and Opportunities.

Authors:  John S Satterlee; Andrea Beckel-Mitchener; Roger Little; Dena Procaccini; Joni L Rutter; Amy C Lossie
Journal:  Neuroepigenetics       Date:  2015-01-01

2.  Polypyrimidine tract-binding protein blocks miRNA-124 biogenesis to enforce its neuronal-specific expression in the mouse.

Authors:  Kyu-Hyeon Yeom; Simon Mitchell; Anthony J Linares; Sika Zheng; Chia-Ho Lin; Xiao-Jun Wang; Alexander Hoffmann; Douglas L Black
Journal:  Proc Natl Acad Sci U S A       Date:  2018-11-06       Impact factor: 11.205

Review 3.  Druggable Transcriptional Networks in the Human Neurogenic Epigenome.

Authors:  Gerald A Higgins; Aaron M Williams; Alex S Ade; Hasan B Alam; Brian D Athey
Journal:  Pharmacol Rev       Date:  2019-10       Impact factor: 25.468

4.  Mutations in ACTL6B Cause Neurodevelopmental Deficits and Epilepsy and Lead to Loss of Dendrites in Human Neurons.

Authors:  Scott Bell; Justine Rousseau; Huashan Peng; Zahia Aouabed; Pierre Priam; Jean-Francois Theroux; Malvin Jefri; Arnaud Tanti; Hanrong Wu; Ilaria Kolobova; Heika Silviera; Karla Manzano-Vargas; Sophie Ehresmann; Fadi F Hamdan; Nuwan Hettige; Xin Zhang; Lilit Antonyan; Christina Nassif; Lina Ghaloul-Gonzalez; Jessica Sebastian; Jerry Vockley; Amber G Begtrup; Ingrid M Wentzensen; Amy Crunk; Robert D Nicholls; Kristin C Herman; Joshua L Deignan; Walla Al-Hertani; Stephanie Efthymiou; Vincenzo Salpietro; Noriko Miyake; Yoshio Makita; Naomichi Matsumoto; Rune Østern; Gunnar Houge; Maria Hafström; Emily Fassi; Henry Houlden; Jolien S Klein Wassink-Ruiter; Dominic Nelson; Amy Goldstein; Tabib Dabir; Julien van Gils; Thomas Bourgeron; Richard Delorme; Gregory M Cooper; Jose E Martinez; Candice R Finnila; Lionel Carmant; Anne Lortie; Renske Oegema; Koen van Gassen; Sarju G Mehta; Dagmar Huhle; Rami Abou Jamra; Sonja Martin; Han G Brunner; Dick Lindhout; Margaret Au; John M Graham; Christine Coubes; Gustavo Turecki; Simon Gravel; Naguib Mechawar; Elsa Rossignol; Jacques L Michaud; Julie Lessard; Carl Ernst; Philippe M Campeau
Journal:  Am J Hum Genet       Date:  2019-04-25       Impact factor: 11.025

Review 5.  Neuron-specific alternative splicing of transcriptional machineries: Implications for neurodevelopmental disorders.

Authors:  Robert S Porter; Farris Jaamour; Shigeki Iwase
Journal:  Mol Cell Neurosci       Date:  2017-12-15       Impact factor: 4.314

6.  Evf2 lncRNA/BRG1/DLX1 interactions reveal RNA-dependent inhibition of chromatin remodeling.

Authors:  Ivelisse Cajigas; David E Leib; Jesse Cochrane; Hao Luo; Kelsey R Swyter; Sean Chen; Brian S Clark; James Thompson; John R Yates; Robert E Kingston; Jhumku D Kohtz
Journal:  Development       Date:  2015-07-02       Impact factor: 6.868

7.  Prenatal arsenic exposure alters REST/NRSF and microRNA regulators of embryonic neural stem cell fate in a sex-dependent manner.

Authors:  Christina R Tyler; Matthew T Labrecque; Elizabeth R Solomon; Xun Guo; Andrea M Allan
Journal:  Neurotoxicol Teratol       Date:  2016-10-14       Impact factor: 3.763

8.  Dual ARID1A/ARID1B loss leads to rapid carcinogenesis and disruptive redistribution of BAF complexes.

Authors:  Zixi Wang; Kenian Chen; Yuemeng Jia; Jen-Chieh Chuang; Xuxu Sun; Yu-Hsuan Lin; Cemre Celen; Lin Li; Fang Huang; Xin Liu; Diego H Castrillon; Tao Wang; Hao Zhu
Journal:  Nat Cancer       Date:  2020-09-07

Review 9.  Direct Neuronal Reprogramming: Bridging the Gap Between Basic Science and Clinical Application.

Authors:  Lakshmy Vasan; Eunjee Park; Luke Ajay David; Taylor Fleming; Carol Schuurmans
Journal:  Front Cell Dev Biol       Date:  2021-07-05

10.  Modeling suggests combined-drug treatments for disorders impairing synaptic plasticity via shared signaling pathways.

Authors:  Paul Smolen; Marcelo A Wood; Douglas A Baxter; John H Byrne
Journal:  J Comput Neurosci       Date:  2020-11-11       Impact factor: 1.621

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