Literature DB >> 24079907

Biomolecular adsorption at aqueous silver interfaces: first-principles calculations, polarizable force-field simulations, and comparisons with gold.

Zak E Hughes1, Louise B Wright, Tiffany R Walsh.   

Abstract

The molecular simulation of biomolecules adsorbed at noble metal interfaces can assist in the development of bionanotechnology applications. In line with advances in polarizable force fields for adsorption at aqueous gold interfaces, there is scope for developing a similar force field for silver. One way to accomplish this is via the generation of in vacuo adsorption energies calculated using first-principles approaches for a wide range of different but biologically relevant small molecules, including water. Here, we present such first-principles data for a comprehensive range of bio-organic molecules obtained from plane-wave density functional theory calculations using the vdW-DF functional. As reported previously for the gold force field, GolP-CHARMM (Wright, L. B.; Rodger, P. M.; Corni, S.; Walsh, T. R. GolP-CHARMM: first-principles based force-fields for the interaction of proteins with Au(111) and Au(100). J. Chem. Theory Comput. 2013, 9, 1616-1630), we have used these data to construct a a new force field, AgP-CHARMM, suitable for the simulation of biomolecules at the aqueous Ag(111) and Ag(100) interfaces. This force field is derived to be consistent with GolP-CHARMM such that adsorption on Ag and Au can be compared on an equal footing. Our force fields are used to evaluate the water overlayer stability on both silver and gold, finding good agreement with known behaviors. We also calculate and compare the structuring (spatial and orientational) of liquid water adsorbed at both silver and gold. Finally, we report the adsorption free energy of a range of amino acids at both the Au(111) and Ag(111) aqueous interfaces, calculated using metadynamics. Stronger adsorption on gold was noted in most cases, with the exception being the carboxylate group present in aspartic acid. Our findings also indicate differences in the binding free energy profile between silver and gold for some amino acids, notably for His and Arg. Our analysis suggests that the relatively stronger structuring of the first water layer on silver, relative to gold, could give rise to these differences.

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Year:  2013        PMID: 24079907     DOI: 10.1021/la402839q

Source DB:  PubMed          Journal:  Langmuir        ISSN: 0743-7463            Impact factor:   3.882


  10 in total

Review 1.  Force fields for simulating the interaction of surfaces with biological molecules.

Authors:  Lewis Martin; Marcela M Bilek; Anthony S Weiss; Serdar Kuyucak
Journal:  Interface Focus       Date:  2016-02-06       Impact factor: 3.906

2.  Perspectives on the simulation of protein-surface interactions using empirical force field methods.

Authors:  Robert A Latour
Journal:  Colloids Surf B Biointerfaces       Date:  2014-06-30       Impact factor: 5.268

3.  NanoEHS beyond Toxicity - Focusing on Biocorona.

Authors:  Sijie Lin; Monika Mortimer; Ran Chen; Aleksandr Kakinen; Jim E Riviere; Thomas P Davis; Feng Ding; Pu Chun Ke
Journal:  Environ Sci Nano       Date:  2017-06-01

4.  Cofibrillization of Pathogenic and Functional Amyloid Proteins with Gold Nanoparticles against Amyloidogenesis.

Authors:  Ibrahim Javed; Yunxiang Sun; Jozef Adamcik; Bo Wang; Aleksandr Kakinen; Emily H Pilkington; Feng Ding; Raffaele Mezzenga; Thomas P Davis; Pu Chun Ke
Journal:  Biomacromolecules       Date:  2017-11-14       Impact factor: 6.988

Review 5.  Understanding interactions between biomolecules and two-dimensional nanomaterials using in silico microscopes.

Authors:  Serena H Chen; David R Bell; Binquan Luan
Journal:  Adv Drug Deliv Rev       Date:  2022-05-19       Impact factor: 17.873

6.  Predicting biomolecule adsorption on MoS2 nanosheets with high structural fidelity.

Authors:  Le Nhan Pham; Tiffany R Walsh
Journal:  Chem Sci       Date:  2022-03-16       Impact factor: 9.969

7.  Probing the modulated formation of gold nanoparticles-beta-lactoglobulin corona complexes and their applications.

Authors:  Jiang Yang; Bo Wang; Youngsang You; Woo-Jin Chang; Ke Tang; Yi-Cheng Wang; Wenzhao Zhang; Feng Ding; Sundaram Gunasekaran
Journal:  Nanoscale       Date:  2017-11-23       Impact factor: 7.790

8.  Facet selectivity in gold binding peptides: exploiting interfacial water structure.

Authors:  Louise B Wright; J Pablo Palafox-Hernandez; P Mark Rodger; Stefano Corni; Tiffany R Walsh
Journal:  Chem Sci       Date:  2015-06-23       Impact factor: 9.825

9.  Generation of Subsurface Voids, Incubation Effect, and Formation of Nanoparticles in Short Pulse Laser Interactions with Bulk Metal Targets in Liquid: Molecular Dynamics Study.

Authors:  Cheng-Yu Shih; Maxim V Shugaev; Chengping Wu; Leonid V Zhigilei
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2017-06-01       Impact factor: 4.126

10.  Multiscale Modeling of Bio-Nano Interactions of Zero-Valent Silver Nanoparticles.

Authors:  Julia Subbotina; Vladimir Lobaskin
Journal:  J Phys Chem B       Date:  2022-02-08       Impact factor: 2.991

  10 in total

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