Literature DB >> 24068436

Selection of suitable reference genes for mRNA quantification studies using common marmoset tissues.

Yoshinori Shimamoto1, Hiroshi Kitamura, Kimie Niimi, Yasunaga Yoshikawa, Fumio Hoshi, Mayumi Ishizuka, Eiki Takahashi.   

Abstract

The common marmoset (Callithrix jacchus) is increasingly being used as a non-human primate animal model in biomedical research. To perform accurate quantitative analysis of gene expression by quantitative reverse transcription polymerase chain reaction, reliable reference genes should be selected. In this study, we evaluated the expressions of 11 widely used reference genes: ACTB, ATP5F1, B2M, GAPDH, HPRT1, PGK1, PPIA, RN18S1, RPLP0, TBP and UBC in 12 tissues and five brain areas of healthy common marmosets. NormFinder and geNorm indicated that the most suitable reference genes for cross-sectional studies of the 17 tissues were RN18S1 and RPLP0. Conversely, ACTB and PPIA were the most suitable for analyzing brain samples; however, the expression of PGK1 fluctuated among brain areas. These results indicate that suitable reference genes differ between the tissues examined. This study provides fundamental information for gene expression studies of the common marmoset and highlights the importance of validating reference genes before quantification of target mRNAs.

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Year:  2013        PMID: 24068436     DOI: 10.1007/s11033-013-2791-0

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  43 in total

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Journal:  Biochem Biophys Res Commun       Date:  2004-01-23       Impact factor: 3.575

2.  Selection of reference genes for quantitative real-time RT-PCR studies in mouse brain.

Authors:  Enrica Boda; Alessandro Pini; Eriola Hoxha; Roberta Parolisi; Filippo Tempia
Journal:  J Mol Neurosci       Date:  2008-07-08       Impact factor: 3.444

3.  A new primate model for multiple sclerosis in the common marmoset.

Authors:  B A 't Hart; M van Meurs; H P Brok; L Massacesi; J Bauer; L Boon; R E Bontrop; J D Laman
Journal:  Immunol Today       Date:  2000-06

4.  Housekeeping gene expression during fetal brain development in the rat-validation by semi-quantitative RT-PCR.

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Journal:  Brain Res Dev Brain Res       Date:  2005-04-21

5.  Evaluating reference genes to normalize gene expression in human epileptogenic brain tissues.

Authors:  Stephan Wierschke; Sylvain Gigout; Peter Horn; Thomas-Nicolas Lehmann; Christoph Dehnicke; Anja U Bräuer; Rudolf A Deisz
Journal:  Biochem Biophys Res Commun       Date:  2010-11-20       Impact factor: 3.575

Review 6.  Control selection for RNA quantitation.

Authors:  T Suzuki; P J Higgins; D R Crawford
Journal:  Biotechniques       Date:  2000-08       Impact factor: 1.993

7.  MIQE précis: Practical implementation of minimum standard guidelines for fluorescence-based quantitative real-time PCR experiments.

Authors:  Stephen A Bustin; Jean-François Beaulieu; Jim Huggett; Rolf Jaggi; Frederick S B Kibenge; Pål A Olsvik; Louis C Penning; Stefan Toegel
Journal:  BMC Mol Biol       Date:  2010-09-21       Impact factor: 2.946

8.  A validation of 10 feline reference genes for gene expression measurements in snap-frozen tissues.

Authors:  Louis C Penning; Henriette E Vrieling; Bas Brinkhof; Frank M Riemers; Jan Rothuizen; Gerard R Rutteman; Herman A W Hazewinkel
Journal:  Vet Immunol Immunopathol       Date:  2007-08-15       Impact factor: 2.046

Review 9.  Marmoset models commonly used in biomedical research.

Authors:  Keith Mansfield
Journal:  Comp Med       Date:  2003-08       Impact factor: 0.982

10.  Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes.

Authors:  Jo Vandesompele; Katleen De Preter; Filip Pattyn; Bruce Poppe; Nadine Van Roy; Anne De Paepe; Frank Speleman
Journal:  Genome Biol       Date:  2002-06-18       Impact factor: 13.583

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  8 in total

1.  Trait Anxiety Mediated by Amygdala Serotonin Transporter in the Common Marmoset.

Authors:  S K L Quah; L McIver; A C Roberts; A M Santangelo
Journal:  J Neurosci       Date:  2020-05-11       Impact factor: 6.167

2.  Insula serotonin 2A receptor binding and gene expression contribute to serotonin transporter polymorphism anxious phenotype in primates.

Authors:  Andrea M Santangelo; Steve J Sawiak; Tim Fryer; Young Hong; Yoshiro Shiba; Hannah F Clarke; Patrick J Riss; Valentina Ferrari; Roger Tait; John Suckling; Franklin I Aigbirhio; Angela C Roberts
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-02       Impact factor: 11.205

3.  Identification of endogenous controls for analyzing serum exosomal miRNA in patients with hepatitis B or hepatocellular carcinoma.

Authors:  Yi Li; Liqun Zhang; Fei Liu; Guiming Xiang; Dongneng Jiang; Xiaoyun Pu
Journal:  Dis Markers       Date:  2015-02-26       Impact factor: 3.434

4.  Generation of transgenic marmosets expressing genetically encoded calcium indicators.

Authors:  Jung Eun Park; Xian Feng Zhang; Sang-Ho Choi; Junko Okahara; Erika Sasaki; Afonso C Silva
Journal:  Sci Rep       Date:  2016-10-11       Impact factor: 4.379

5.  Highly Selective PPARα (Peroxisome Proliferator-Activated Receptor α) Agonist Pemafibrate Inhibits Stent Inflammation and Restenosis Assessed by Multimodality Molecular-Microstructural Imaging.

Authors:  Hiroshi Iwata; Eric A Osborn; Giovanni J Ughi; Kentaro Murakami; Claudia Goettsch; Joshua D Hutcheson; Adam Mauskapf; Peter C Mattson; Peter Libby; Sasha A Singh; Joan Matamalas; Elena Aikawa; Guillermo J Tearney; Masanori Aikawa; Farouc A Jaffer
Journal:  J Am Heart Assoc       Date:  2021-10-11       Impact factor: 5.501

6.  Interferon Regulatory Factors IRF1 and IRF7 Directly Regulate Gene Expression in Bats in Response to Viral Infection.

Authors:  Aaron T Irving; Qian Zhang; Pui-San Kong; Katarina Luko; Pritisha Rozario; Ming Wen; Feng Zhu; Peng Zhou; Justin H J Ng; Radoslaw M Sobota; Lin-Fa Wang
Journal:  Cell Rep       Date:  2020-11-03       Impact factor: 9.423

Review 7.  With Reference to Reference Genes: A Systematic Review of Endogenous Controls in Gene Expression Studies.

Authors:  Joanne R Chapman; Jonas Waldenström
Journal:  PLoS One       Date:  2015-11-10       Impact factor: 3.240

8.  Down-Regulated Phosphoglycerate Kinase 1 Expression Is Associated With Poor Prognosis in Patients With Gallbladder Cancer.

Authors:  Wei Lu; Jian Gao; Jingyun Yang; Yang Cao; Lin Jiang; Maolan Li; Yijian Zhang; Jian Zhou; Yingbin Liu
Journal:  Medicine (Baltimore)       Date:  2015-12       Impact factor: 1.817

  8 in total

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