| Literature DB >> 24062763 |
Christian Zörb1, Dirk Becker, Mario Hasler, Karl H Mühling, Victoria Gödde, Karsten Niehaus, Christoph-Martin Geilfus.
Abstract
Wheat is an important source of proteins and metabolites for human and animal nutrition. To assess the nutritional quality of wheat products, various protein and diverse metabolites have to be evaluated. The grain storage protein family of the α-gliadins are suggested to be the primary initiator of the inflammatory response to gluten in Celiac disease patients. With the technique of RNAi, the α-gliadin storage protein fraction in wheat grains was recently knocked down. From a patient's perspective, this is a desired approach, however, this study aims to evaluate whether such a down-regulation of these problematic α-gliadins also has unintended side-effects on other plant metabolites. Such uncontrolled and unknown arbitrary effects on any metabolite in plants designated for food production would surely represent an avoidable risk for the consumer. In general, α-gliadins are rich in sulfur, making their synthesis and content depended of the sulfur supply. For this reason, the influence of the application of increasing sulfur amounts on the metabolome of α-gliadin-deficient wheat was additionally investigated because it might be possible that e.g., considerable high/low amounts of S might increase or even induce such unintended effects that are not observable under moderate S nutrition. By silencing the α-gliadin genes, a recently developed wheat line that lacks the set of 75 corresponding α-gliadin proteins has become available. The plants were subsequently tested for RNAi-induced effects on metabolites that were not directly attributable to the specific effects of the RNAi-approach on the α-gliadin proteins. For this, GC-MS-based metabolite profiles were recorded. A comparison of wild type with gliadin-deficient plants cultivated in pot experiments revealed no differences in all 109 analyzed metabolites, regardless of the S-nutritional status. No unintended effects attributable to the RNAi-based specific genetic deletion of a storage protein fraction were observed.Entities:
Keywords: Celiac disease; GC-MS; gliadin; metabolites; sulfur; wheat
Year: 2013 PMID: 24062763 PMCID: PMC3775129 DOI: 10.3389/fpls.2013.00369
Source DB: PubMed Journal: Front Plant Sci ISSN: 1664-462X Impact factor: 5.753
Testing for genotypic differences in the metabolome.
| Transgene vs. Wild type | Grain | 0 | 0.990 | 1 | No differences between metabolites |
| 0.1 | 0.880 | 0.7536 | No differences between metabolites | ||
| 0.2 | 1.021 | 1 | No differences between metabolites | ||
| Transgene vs. Wild type | Husk and rachis | 0 | 1.188 | 0.1515 | No differences between metabolites |
| 0.1 | 1.182 | 0.9312 | No differences between metabolites | ||
| 0.2 | 1.162 | 0.6434 | No differences between metabolites | ||
| Transgene vs. Wild type | Straw | 0 | 1.466 | 0.0543 | No differences between metabolites |
| 0.1 | 1.307 | 0.3968 | No differences between metabolites | ||
| 0.2 | 1.086 | 0.9175 | No differences between metabolites |
Genotypic effect of the RNAi-approach on the metabolome. Comparison of the means of the genotypes (transgene vs. the wild type) for each level of the remaining influence (organs and S-fertilization rate). Multiple contrast tests for ratios of means. Column “Ratio” refers to the ratio of the two means of the corresponding comparison. For example, in row 1, the mean of group “grain, S0, transgene” is 0.990 times the mean of group “grain, S0, wild type.” These two means are not significantly different (p = 1). The remaining comparisons can be interpreted in a similar way. Thus, no metabolome differences can be seen between the two genotypes, either in the three different organs or as caused by the variable sulfur supply. Wild type, cv. Florida; transgene, alpha-gliadin knock down. Sulfur treatment: S0, 0 g S/pot; S1, 0.1 g S/pot; S2, 0.2 g S/pot.
Figure 1Genotypic effect of the RNAi-approach on the metabolome. Comparison of the means of the influence factor “genotype” (transgene vs. the wild type) for each level of the remaining influence (organs and sulfur fertilization rate). Multiple contrast tests for ratios of means. None of the comparisons revealed significant mean differences between the means. For example, in the first comparison, the mean of group “transgene, S0, grain” equals the mean of the group “wild type, S0, grain, S0.” The remaining comparisons can be interpreted in a similar way. Comparisons are indicated by the framed dotted lines. No mean differences exist at a p-value < 0.05. Light-gray, wild-type control; dark-gray, transgene wheat line. Wild type, cv. Florida; transgene, alpha-gliadin knock down. Sulfur treatment: S0, 0 g S/pot; S1, 0.1 g S/pot; S2, 0.2 g S/pot.
Testing the influence of variable sulfur fertilization rates on the metabolite profile i.e., metabolome.
| S1 vs. S0 | Wild type | Grain | 0.363 | 0.006 | Significant differences between metabolites |
| S2 vs. S0 | 0.348 | 0.013 | Significant differences between metabolites | ||
| S2 vs. S1 | 0.958 | 0.999 | No differences between metabolites | ||
| S1 vs. S0 | Transgene | Grain | 0.323 | 0.00 | Significant differences between metabolites |
| S2 vs. S0 | 0.359 | 0.001 | Significant differences between metabolites | ||
| S2 vs. S1 | 1.111 | 0.892 | No differences between metabolites | ||
| S1 vs. S0 | Wild type | Husk and rachis | 0.804 | 0.772 | No differences between metabolites |
| S2 vs. S0 | 0.831 | 0.546 | No differences between metabolites | ||
| S2 vs. S1 | 1.034 | 1 | No differences between metabolites | ||
| S1 vs. S0 | Transgene | Husk and rachis | 0.8 | 0.360 | No differences between metabolites |
| S2 vs. S0 | 0.813 | 0.122 | No differences between metabolites | ||
| S2 vs. S1 | 1.017 | 1 | No differences between metabolites | ||
| S1 vs. S0 | Wild type | Straw | 0.923 | 0.996 | No differences between metabolites |
| S2 vs. S0 | 1.208 | 0.574 | No differences between metabolites | ||
| S2 vs. S1 | 1.310 | 0.58 | No differences between metabolites | ||
| S1 vs. S0 | Transgene | Straw | 0.822 | 0.381 | No differences between metabolites |
| S2 vs. S0 | 0.895 | 0.666 | No differences between metabolites | ||
| S2 vs. S1 | 1.080 | 0.825 | No differences between metabolites |
Organ-specific effects of variable S-fertilization rates on the whole metabolome. Comparison of the means of the S-fertilization rates (S0, S1, S2) for each level of the remaining influence factors (genotpye and organs). Multiple contrast tests for ratios of means. Column “Ratio” refers to the ratio of the two means of the corresponding comparison. For example, in row 1, the mean of group “grain, wild type, S1” is 0.363 times the means of group “grain, wild type, S0.” These two means are significantly different (p = 0.0064). In other words, fewer metabolites are present in the grains of the wild type that was not supplied with S compared with those that received treatment with 0.1 g S/pot. The remaining comparisons can be interpreted in a similar way. Significant differences of the mean (p = 0.05) occurred only in the grains under increasing sulfur supply conditions. Wild type, cv. Florida; transgene, alpha-gliadin knock down. Sulfur treatment: S0, 0 g S/pot; S1, 0.1 g S/pot; S2, 0.2 g S/pot.
Figure 2Organ-specific effects of varying sulfur fertilization rates on the metabolome. Comparison of the means of the influence factor “S-fertilization rate” (S0, S1, S2) for each level of the remaining influence (genotpye and organs). Multiple contrast tests for ratios of means. Comparisons are indicated by the framed dotted lines. In the first comparison, the mean of group “S0, transgene, grain” differs from the mean of the two groups “S1, transgene, grain” and “S2, transgene, grain.” This difference also occurred in the grains of the wild type. No other significant mean differences in any of the other comparisons at p-value < 0.05 were detected. Light-gray, S2; moderate gray S1; dark-gray, S0. Wild type, cv. Florida; transgene, alpha-gliadin knock down. Sulfur treatment: S0, 0 g S/pot; S1, 0.1 g S/pot; S2, 0.2 g S/pot.
Testing the influence of variable sulfur fertilization rates on single metabolites.
| Wild type | S1 vs. S0 | Yes | β-aminoisobutyric acid | 0.147 | 0.0151 | Significantly less in the S0 treatment |
| S2 vs. S0 | Yes | β-aminoisobutyric acid | 0.171 | 0:0015 | Significantly less in the S0 treatment | |
| S2 vs. S1 | No | – | – | – | – | |
| Transgene | S1 vs. S0 | Yes | Alanine | 0.158 | 0.000 | Significantly less in the S0 treatment |
| Glycine | 0.131 | 0.054 | Significantly less in the S0 treatment | |||
| Serine | 0.108 | 0.026 | Significantly less in the S0 treatment | |||
| Homoserine | 0.228 | 0.062 | Significantly less in the S0 treatment | |||
| Tyrosine | 0.255 | 0.063 | Significantly less in the S0 treatment | |||
| Threonine | 0.100 | 0.042 | Significantly less in the S0 treatment | |||
| S2 vs. S0 | Yes | Alanine | 0.158 | 0.000 | Significantly less in the S0 treatment | |
| Glycine | 0.147 | 0.003 | Significantly less in the S0 treatment | |||
| Serine | 0.116 | 0.000 | Significantly less in the S0 treatment | |||
| Homoserine | 0.206 | 0.045 | Significantly less in the S0 treatment | |||
| Tyrosine | 0.236 | 0.049 | Significantly less in the S0 treatment | |||
| S2 vs. S1 | No | – | – | – | – | |
Testing the influence of variable sulfur fertilization rates (S0, S1, S2) on the single metabolites. Multiple contrast tests for 28 metabolites with an additional multiplicity adjustment. Columns “Summary of comparison from Table .