Literature DB >> 24060849

Chinese alligator genome illustrates molecular adaptations.

Todd A Castoe1, David D Pollock.   

Abstract

In the September issue of Cell Research, Wan et al. analyze the Chinese Alligator genome and identify multiple instances of positively-selected changes in protein-coding genes and expansions of multi-gene families that appear to explain suites of phenotypes central to the unique habits and physiology of crocodilian reptiles. They demonstrate the effectiveness of comparative systems genomics in integrating information from comparative genomics, molecular evolution, and systems biology to understand the evolutionary dynamics of complex systems.

Entities:  

Mesh：

Year:  2013        PMID： 24060849      PMCID： PMC3817551          DOI： 10.1038/cr.2013.134

Source DB:  PubMed          Journal:  Cell Res        ISSN： 1001-0602            Impact factor:   25.617


  11 in total

1.  Sequencing three crocodilian genomes to illuminate the evolution of archosaurs and amniotes.

Authors:  John A St John; Edward L Braun; Sally R Isberg; Lee G Miles; Amanda Y Chong; Jaime Gongora; Pauline Dalzell; Christopher Moran; Bertrand Bed'hom; Arkhat Abzhanov; Shane C Burgess; Amanda M Cooksey; Todd A Castoe; Nicholas G Crawford; Llewellyn D Densmore; Jennifer C Drew; Scott V Edwards; Brant C Faircloth; Matthew K Fujita; Matthew J Greenwold; Federico G Hoffmann; Jonathan M Howard; Taisen Iguchi; Daniel E Janes; Shahid Yar Khan; Satomi Kohno; Ap Jason de Koning; Stacey L Lance; Fiona M McCarthy; John E McCormack; Mark E Merchant; Daniel G Peterson; David D Pollock; Nader Pourmand; Brian J Raney; Kyria A Roessler; Jeremy R Sanford; Roger H Sawyer; Carl J Schmidt; Eric W Triplett; Tracey D Tuberville; Miryam Venegas-Anaya; Jason T Howard; Erich D Jarvis; Louis J Guillette; Travis C Glenn; Richard E Green; David A Ray
Journal:  Genome Biol       Date:  2012-01-31       Impact factor: 13.583

2.  Physicochemical evolution and molecular adaptation of the cetacean and artiodactyl cytochrome b proteins.

Authors:  D A McClellan; E J Palfreyman; M J Smith; J L Moss; R G Christensen; J K Sailsbery
Journal:  Mol Biol Evol       Date:  2004-10-27       Impact factor: 16.240

3.  Evidence for an ancient adaptive episode of convergent molecular evolution.

Authors:  Todd A Castoe; A P Jason de Koning; Hyun-Min Kim; Wanjun Gu; Brice P Noonan; Gavin Naylor; Zhi J Jiang; Christopher L Parkinson; David D Pollock
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-28       Impact factor: 11.205

4.  Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes.

Authors:  Todd A Castoe; Jason A P de Koning; Kathryn T Hall; Ken D Yokoyama; Wanjun Gu; Eric N Smith; Cédric Feschotte; Peter Uetz; David A Ray; Jason Dobry; Robert Bogden; Stephen P Mackessy; Anne M Bronikowski; Wesley C Warren; Stephen M Secor; David D Pollock
Journal:  Genome Biol       Date:  2011-07-28       Impact factor: 13.583

5.  Accelerated evolution of the electron transport chain in anthropoid primates.

Authors:  Lawrence I Grossman; Derek E Wildman; Timothy R Schmidt; Morris Goodman
Journal:  Trends Genet       Date:  2004-11       Impact factor: 11.639

6.  A proposal to sequence the genome of a garter snake (Thamnophis sirtalis).

Authors:  Todd A Castoe; Anne M Bronikowski; Edmund D Brodie; Scott V Edwards; Michael E Pfrender; Michael D Shapiro; David D Pollock; Wesley C Warren
Journal:  Stand Genomic Sci       Date:  2011-04-29

7.  Adaptive evolution and functional redesign of core metabolic proteins in snakes.

Authors:  Todd A Castoe; Zhi J Jiang; Wanjun Gu; Zhengyuan O Wang; David D Pollock
Journal:  PLoS One       Date:  2008-05-21       Impact factor: 3.240

8.  The draft genomes of soft-shell turtle and green sea turtle yield insights into the development and evolution of the turtle-specific body plan.

Authors:  Zhuo Wang; Juan Pascual-Anaya; Amonida Zadissa; Wenqi Li; Yoshihito Niimura; Zhiyong Huang; Chunyi Li; Simon White; Zhiqiang Xiong; Dongming Fang; Bo Wang; Yao Ming; Yan Chen; Yuan Zheng; Shigehiro Kuraku; Miguel Pignatelli; Javier Herrero; Kathryn Beal; Masafumi Nozawa; Qiye Li; Juan Wang; Hongyan Zhang; Lili Yu; Shuji Shigenobu; Junyi Wang; Jiannan Liu; Paul Flicek; Steve Searle; Jun Wang; Shigeru Kuratani; Ye Yin; Bronwen Aken; Guojie Zhang; Naoki Irie
Journal:  Nat Genet       Date:  2013-04-28       Impact factor: 38.330

9.  Genome analysis and signature discovery for diving and sensory properties of the endangered Chinese alligator.

Authors:  Qiu-Hong Wan; Sheng-Kai Pan; Li Hu; Ying Zhu; Peng-Wei Xu; Jin-Quan Xia; Hui Chen; Gen-Yun He; Jing He; Xiao-Wei Ni; Hao-Long Hou; Sheng-Guang Liao; Hai-Qiong Yang; Ying Chen; Shu-Kun Gao; Yun-Fa Ge; Chang-Chang Cao; Peng-Fei Li; Li-Ming Fang; Li Liao; Shu Zhang; Meng-Zhen Wang; Wei Dong; Sheng-Guo Fang
Journal:  Cell Res       Date:  2013-08-06       Impact factor: 25.617

10.  The western painted turtle genome, a model for the evolution of extreme physiological adaptations in a slowly evolving lineage.

Authors:  H Bradley Shaffer; Patrick Minx; Daniel E Warren; Andrew M Shedlock; Robert C Thomson; Nicole Valenzuela; John Abramyan; Chris T Amemiya; Daleen Badenhorst; Kyle K Biggar; Glen M Borchert; Christopher W Botka; Rachel M Bowden; Edward L Braun; Anne M Bronikowski; Benoit G Bruneau; Leslie T Buck; Blanche Capel; Todd A Castoe; Mike Czerwinski; Kim D Delehaunty; Scott V Edwards; Catrina C Fronick; Matthew K Fujita; Lucinda Fulton; Tina A Graves; Richard E Green; Wilfried Haerty; Ramkumar Hariharan; Omar Hernandez; LaDeana W Hillier; Alisha K Holloway; Daniel Janes; Fredric J Janzen; Cyriac Kandoth; Lesheng Kong; A P Jason de Koning; Yang Li; Robert Literman; Suzanne E McGaugh; Lindsey Mork; Michelle O'Laughlin; Ryan T Paitz; David D Pollock; Chris P Ponting; Srihari Radhakrishnan; Brian J Raney; Joy M Richman; John St John; Tonia Schwartz; Arun Sethuraman; Phillip Q Spinks; Kenneth B Storey; Nay Thane; Tomas Vinar; Laura M Zimmerman; Wesley C Warren; Elaine R Mardis; Richard K Wilson
Journal:  Genome Biol       Date:  2013-03-28       Impact factor: 13.583
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  1 in total

1.  Antimicrobial peptides in reptiles.

Authors:  Monique L van Hoek
Journal:  Pharmaceuticals (Basel)       Date:  2014-06-10
  1 in total

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