Literature DB >> 21801464

Sequencing the genome of the Burmese python (Python molurus bivittatus) as a model for studying extreme adaptations in snakes.

Todd A Castoe, Jason A P de Koning, Kathryn T Hall, Ken D Yokoyama, Wanjun Gu, Eric N Smith, Cédric Feschotte, Peter Uetz, David A Ray, Jason Dobry, Robert Bogden, Stephen P Mackessy, Anne M Bronikowski, Wesley C Warren, Stephen M Secor, David D Pollock.   

Abstract

The Consortium for Snake Genomics is in the process of sequencing the genome and creating transcriptomic resources for the Burmese python. Here, we describe how this will be done, what analyses this work will include, and provide a timeline.

Entities:  

Mesh：

Year:  2011        PMID： 21801464      PMCID： PMC3218823          DOI： 10.1186/gb-2011-12-7-406

Source DB:  PubMed          Journal:  Genome Biol        ISSN： 1474-7596            Impact factor:   13.583


  26 in total

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3.  Control of segment number in vertebrate embryos.

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4.  Early evolution of the venom system in lizards and snakes.

Authors:  Bryan G Fry; Nicolas Vidal; Janette A Norman; Freek J Vonk; Holger Scheib; S F Ryan Ramjan; Sanjaya Kuruppu; Kim Fung; S Blair Hedges; Michael K Richardson; Wayne C Hodgson; Vera Ignjatovic; Robyn Summerhayes; Elazar Kochva
Journal:  Nature       Date:  2005-11-16       Impact factor: 49.962

5.  Changes in Hox genes' structure and function during the evolution of the squamate body plan.

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6.  Dynamic nucleotide mutation gradients and control region usage in squamate reptile mitochondrial genomes.

Authors:  T A Castoe; W Gu; A P J de Koning; J M Daza; Z J Jiang; C L Parkinson; D D Pollock
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8.  A proposal to sequence the genome of a garter snake (Thamnophis sirtalis).

Authors:  Todd A Castoe; Anne M Bronikowski; Edmund D Brodie; Scott V Edwards; Michael E Pfrender; Michael D Shapiro; David D Pollock; Wesley C Warren
Journal:  Stand Genomic Sci       Date:  2011-04-29

9.  Eukaryotic genome size databases.

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Journal:  Nucleic Acids Res       Date:  2006-11-07       Impact factor: 16.971

10.  Adaptive responses to feeding in Burmese pythons: pay before pumping.

Authors:  S M Secor; J Diamond
Journal:  J Exp Biol       Date:  1995-06       Impact factor: 3.312
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  33 in total

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Authors:  John A St John; Edward L Braun; Sally R Isberg; Lee G Miles; Amanda Y Chong; Jaime Gongora; Pauline Dalzell; Christopher Moran; Bertrand Bed'hom; Arkhat Abzhanov; Shane C Burgess; Amanda M Cooksey; Todd A Castoe; Nicholas G Crawford; Llewellyn D Densmore; Jennifer C Drew; Scott V Edwards; Brant C Faircloth; Matthew K Fujita; Matthew J Greenwold; Federico G Hoffmann; Jonathan M Howard; Taisen Iguchi; Daniel E Janes; Shahid Yar Khan; Satomi Kohno; Ap Jason de Koning; Stacey L Lance; Fiona M McCarthy; John E McCormack; Mark E Merchant; Daniel G Peterson; David D Pollock; Nader Pourmand; Brian J Raney; Kyria A Roessler; Jeremy R Sanford; Roger H Sawyer; Carl J Schmidt; Eric W Triplett; Tracey D Tuberville; Miryam Venegas-Anaya; Jason T Howard; Erich D Jarvis; Louis J Guillette; Travis C Glenn; Richard E Green; David A Ray
Journal:  Genome Biol       Date:  2012-01-31       Impact factor: 13.583

2.  Genomewide Analysis of the Antimicrobial Peptides in Python bivittatus and Characterization of Cathelicidins with Potent Antimicrobial Activity and Low Cytotoxicity.

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Journal:  Antimicrob Agents Chemother       Date:  2017-08-24       Impact factor: 5.191

3.  Evolution of V genes from the TRV loci of mammals.

Authors:  David N Olivieri; Santiago Gambón-Cerdá; Francisco Gambón-Deza
Journal:  Immunogenetics       Date:  2015-05-31       Impact factor: 2.846

Review 4.  The Genome 10K Project: a way forward.

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Review 5.  Studying mechanisms of regeneration in amphibian and reptilian vertebrate models.

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6.  Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles.

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7.  The Burmese python genome reveals the molecular basis for extreme adaptation in snakes.

Authors:  Todd A Castoe; A P Jason de Koning; Kathryn T Hall; Daren C Card; Drew R Schield; Matthew K Fujita; Robert P Ruggiero; Jack F Degner; Juan M Daza; Wanjun Gu; Jacobo Reyes-Velasco; Kyle J Shaney; Jill M Castoe; Samuel E Fox; Alex W Poole; Daniel Polanco; Jason Dobry; Michael W Vandewege; Qing Li; Ryan K Schott; Aurélie Kapusta; Patrick Minx; Cédric Feschotte; Peter Uetz; David A Ray; Federico G Hoffmann; Robert Bogden; Eric N Smith; Belinda S W Chang; Freek J Vonk; Nicholas R Casewell; Christiaan V Henkel; Michael K Richardson; Stephen P Mackessy; Anne M Bronikowski; Anne M Bronikowsi; Mark Yandell; Wesley C Warren; Stephen M Secor; David D Pollock
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

8.  The king cobra genome reveals dynamic gene evolution and adaptation in the snake venom system.

Authors:  Freek J Vonk; Nicholas R Casewell; Christiaan V Henkel; Alysha M Heimberg; Hans J Jansen; Ryan J R McCleary; Harald M E Kerkkamp; Rutger A Vos; Isabel Guerreiro; Juan J Calvete; Wolfgang Wüster; Anthony E Woods; Jessica M Logan; Robert A Harrison; Todd A Castoe; A P Jason de Koning; David D Pollock; Mark Yandell; Diego Calderon; Camila Renjifo; Rachel B Currier; David Salgado; Davinia Pla; Libia Sanz; Asad S Hyder; José M C Ribeiro; Jan W Arntzen; Guido E E J M van den Thillart; Marten Boetzer; Walter Pirovano; Ron P Dirks; Herman P Spaink; Denis Duboule; Edwina McGlinn; R Manjunatha Kini; Michael K Richardson
Journal:  Proc Natl Acad Sci U S A       Date:  2013-12-02       Impact factor: 11.205

9.  Phylogenomic analyses support the position of turtles as the sister group of birds and crocodiles (Archosauria).

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10.  Chinese alligator genome illustrates molecular adaptations.

Authors:  Todd A Castoe; David D Pollock
Journal:  Cell Res       Date:  2013-09-24       Impact factor: 25.617
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