Literature DB >> 24057814

DNA methylation biomarkers as diagnostic and prognostic tools in colorectal cancer.

Melina-Theoni Gyparaki1, Efthimia K Basdra, Athanasios G Papavassiliou.   

Abstract

Colorectal cancer (CRC) is the third most common type of cancer and is responsible for 9 % of cancer deaths in both men and women in the USA for 2013. It is a heterogenous disease, and its three classification types are microsatellite instability, chromosomal instability, and CpG island methylator phenotype. Biomarkers are molecules, which can be used as indicators of cancer. They have the potential to achieve great sensitivities and specificities in diagnosis and prognosis of CRC. DNA methylation biomarkers are epigenetic markers, more specifically genes that become silenced after aberrant methylation of their promoter in CRC. Some methylation biomarkers like SEPT9 (ColoVantage®) and vimentin (ColoSure(TM)) are already commercially available. Other blood and fecal-based biomarkers are currently under investigation and clinical studies so that they can be used in the near future. Biomarker panels are also currently being studied since they show great potential in diagnosis as they can combine robust biomarkers to achieve even greater sensitivities than single markers. Finally, methylation-sensitive microRNAs (miRNAs) are very promising markers, and their investigation as biomarkers, is only at primitive stage.

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Year:  2013        PMID: 24057814     DOI: 10.1007/s00109-013-1088-z

Source DB:  PubMed          Journal:  J Mol Med (Berl)        ISSN: 0946-2716            Impact factor:   4.599


  54 in total

1.  Molecular features of colorectal hyperplastic polyps and sessile serrated adenoma/polyps from Korea.

Authors:  Kyoung-Mee Kim; Eui Jin Lee; Sangyun Ha; So Young Kang; Kee-Taek Jang; Cheol Keun Park; Jin Yong Kim; Young Ho Kim; Dong Kyung Chang; Robert Daniel Odze
Journal:  Am J Surg Pathol       Date:  2011-09       Impact factor: 6.394

2.  Detection of TFPI2 methylation in the serum of colorectal cancer patients.

Authors:  Kenji Hibi; Tetsuhiro Goto; Atsushi Shirahata; Mitsuo Saito; Gaku Kigawa; Hiroshi Nemoto; Yutaka Sanada
Journal:  Cancer Lett       Date:  2011-07-22       Impact factor: 8.679

3.  Genome-wide identification and validation of a novel methylation biomarker, SDC2, for blood-based detection of colorectal cancer.

Authors:  TaeJeong Oh; Nayoung Kim; Youngho Moon; Myung Soon Kim; Benjamin D Hoehn; Chan Hee Park; Tae Soo Kim; Nam Kyu Kim; Hyun Cheol Chung; Sungwhan An
Journal:  J Mol Diagn       Date:  2013-06-07       Impact factor: 5.568

4.  CpG island methylator phenotype in colorectal cancer.

Authors:  M Toyota; N Ahuja; M Ohe-Toyota; J G Herman; S B Baylin; J P Issa
Journal:  Proc Natl Acad Sci U S A       Date:  1999-07-20       Impact factor: 11.205

5.  Methylation of TFPI2 in stool DNA: a potential novel biomarker for the detection of colorectal cancer.

Authors:  Sabine C Glöckner; Mashaal Dhir; Joo Mi Yi; Kelly E McGarvey; Leander Van Neste; Joost Louwagie; Timothy A Chan; Wolfram Kleeberger; Adriaan P de Bruïne; Kim M Smits; Carolina A J Khalid-de Bakker; Daisy M A E Jonkers; Reinhold W Stockbrügger; Gerrit A Meijer; Frank A Oort; Christine Iacobuzio-Donahue; Katja Bierau; James G Herman; Stephen B Baylin; Manon Van Engeland; Kornel E Schuebel; Nita Ahuja
Journal:  Cancer Res       Date:  2009-05-12       Impact factor: 12.701

6.  Epigenetic silencing of microRNA-34b/c and B-cell translocation gene 4 is associated with CpG island methylation in colorectal cancer.

Authors:  Minoru Toyota; Hiromu Suzuki; Yasushi Sasaki; Reo Maruyama; Kohzoh Imai; Yasuhisa Shinomura; Takashi Tokino
Journal:  Cancer Res       Date:  2008-06-01       Impact factor: 12.701

7.  GATA4 and GATA5 are potential tumor suppressors and biomarkers in colorectal cancer.

Authors:  Debby M E I Hellebrekers; Marjolein H F M Lentjes; Sandra M van den Bosch; Veerle Melotte; Kim A D Wouters; Kathleen L J Daenen; Kim M Smits; Yoshimitsu Akiyama; Yasuhito Yuasa; Silvia Sanduleanu; Carolina A J Khalid-de Bakker; Daisy Jonkers; Matty P Weijenberg; Joost Louwagie; Wim van Criekinge; Beatriz Carvalho; Gerrit A Meijer; Stephen B Baylin; James G Herman; Adriaan P de Bruïne; Manon van Engeland
Journal:  Clin Cancer Res       Date:  2009-06-09       Impact factor: 12.531

8.  Aberrant methylation of the p16 gene is frequently detected in advanced colorectal cancer.

Authors:  Tetsuhiro Goto; Hiroki Mizukami; Atsushi Shirahata; Makiko Sakata; Mitsuo Saito; Kazuyoshi Ishibashi; Gaku Kigawa; Hiroshi Nemoto; Yutaka Sanada; Kenji Hibi
Journal:  Anticancer Res       Date:  2009-01       Impact factor: 2.480

9.  Epigenetic silencing of the intronic microRNA hsa-miR-342 and its host gene EVL in colorectal cancer.

Authors:  W M Grady; R K Parkin; P S Mitchell; J H Lee; Y-H Kim; K D Tsuchiya; M K Washington; C Paraskeva; J K V Willson; A M Kaz; E M Kroh; A Allen; B R Fritz; S D Markowitz; M Tewari
Journal:  Oncogene       Date:  2008-02-11       Impact factor: 9.867

10.  Identification of an epigenetic biomarker panel with high sensitivity and specificity for colorectal cancer and adenomas.

Authors:  Guro E Lind; Stine A Danielsen; Terje Ahlquist; Marianne A Merok; Kim Andresen; Rolf I Skotheim; Merete Hektoen; Torleiv O Rognum; Gunn I Meling; Geir Hoff; Michael Bretthauer; Espen Thiis-Evensen; Arild Nesbakken; Ragnhild A Lothe
Journal:  Mol Cancer       Date:  2011-07-21       Impact factor: 27.401

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  29 in total

1.  DLEC1, a 3p tumor suppressor, represses NF-κB signaling and is methylated in prostate cancer.

Authors:  Lian Zhang; Qian Zhang; LiLi Li; Zhaohui Wang; Jianming Ying; Yu Fan; Qun He; Tianjing Lv; Wenke Han; Jun Li; Yang Yang; Ben Xu; Lu Wang; Qianling Liu; Yinghao Sun; Yinglu Guo; Qian Tao; Jie Jin
Journal:  J Mol Med (Berl)       Date:  2015-02-05       Impact factor: 4.599

2.  Quantitative genome-wide methylation analysis of high-grade non-muscle invasive bladder cancer.

Authors:  Mark O Kitchen; Richard T Bryan; Richard D Emes; John R Glossop; Christopher Luscombe; K K Cheng; Maurice P Zeegers; Nicholas D James; Adam J Devall; Charles A Mein; Lyndon Gommersall; Anthony A Fryer; William E Farrell
Journal:  Epigenetics       Date:  2016-03-01       Impact factor: 4.528

Review 3.  Point-of-care testing in the diagnosis of gastrointestinal cancers: current technology and future directions.

Authors:  Jeremy R Huddy; Melody Z Ni; Sheraz R Markar; George B Hanna
Journal:  World J Gastroenterol       Date:  2015-04-14       Impact factor: 5.742

Review 4.  Diagnostic and therapeutic biomarkers in colorectal cancer: a review.

Authors:  Jéssica Vieira de Assis; Lucélia Antunes Coutinho; Ifeoluwa Temitayo Oyeyemi; Oyetunde Timothy Oyeyemi; Rafaella Fortini E Queiroz Grenfell
Journal:  Am J Cancer Res       Date:  2022-02-15       Impact factor: 6.166

5.  Epigenomic profiling of DNA methylation in paired prostate cancer versus adjacent benign tissue.

Authors:  Milan S Geybels; Shanshan Zhao; Chao-Jen Wong; Marina Bibikova; Brandy Klotzle; Michael Wu; Elaine A Ostrander; Jian-Bing Fan; Ziding Feng; Janet L Stanford
Journal:  Prostate       Date:  2015-09-18       Impact factor: 4.104

6.  TFAP2E hypermethylation was associated with survival advantage in patients with colorectal cancer.

Authors:  Zuo-Ming Zhang; Yibaina Wang; Rong Huang; Yu-Peng Liu; Xia Li; Fu-Lan Hu; Lin Zhu; Fan Wang; Bin-Bin Cui; Xin-Shu Dong; Ya-Shuang Zhao
Journal:  J Cancer Res Clin Oncol       Date:  2014-07-06       Impact factor: 4.553

Review 7.  Use of blood-based biomarkers for early diagnosis and surveillance of colorectal cancer.

Authors:  Ganepola Ap Ganepola; Joel Nizin; John R Rutledge; David H Chang
Journal:  World J Gastrointest Oncol       Date:  2014-04-15

Review 8.  Epigenetic Biomarkers for the Early Detection of Gastrointestinal Cancer.

Authors:  Hui-Mi Chen; Jing-Yua Fang
Journal:  Gastrointest Tumors       Date:  2015-04-15

9.  Genome-wide DNA methylation analysis of colorectal adenomas with and without recurrence reveals an association between cytosine-phosphate-guanine methylation and histological subtypes.

Authors:  David Fiedler; Daniela Hirsch; Nady El Hajj; Howard H Yang; Yue Hu; Carsten Sticht; Indrajit Nanda; Sebastian Belle; Josef Rueschoff; Maxwell P Lee; Thomas Ried; Thomas Haaf; Timo Gaiser
Journal:  Genes Chromosomes Cancer       Date:  2019-08-10       Impact factor: 4.263

10.  The BRAF oncoprotein functions through the transcriptional repressor MAFG to mediate the CpG Island Methylator phenotype.

Authors:  Minggang Fang; Jianhong Ou; Lloyd Hutchinson; Michael R Green
Journal:  Mol Cell       Date:  2014-09-11       Impact factor: 17.970

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